Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15425

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,344,176	+		DZA65_RS15420	0.60	-1.5
3,344,177	-		DZA65_RS15420	0.60	+1.0
3,344,177	-		DZA65_RS15420	0.60	-1.5
3,344,177	-		DZA65_RS15420	0.60	-1.6
3,344,261	+		DZA65_RS15420	0.64	+1.4
3,344,261	+		DZA65_RS15420	0.64	-0.4
3,344,261	+		DZA65_RS15420	0.64	-0.9
3,344,262	-		DZA65_RS15420	0.64	-0.6
3,344,262	-		DZA65_RS15420	0.64	-0.6
3,344,262	-		DZA65_RS15420	0.64	-1.7
3,344,262	-		DZA65_RS15420	0.64	-0.6
3,344,262	-		DZA65_RS15420	0.64	-0.4
3,344,262	-		DZA65_RS15420	0.64	+0.5
3,344,262	-		DZA65_RS15420	0.64	-1.5
3,344,373	-		DZA65_RS15420	0.70	+1.4
3,344,480	-		DZA65_RS15420	0.75	-0.6
3,344,480	-		DZA65_RS15420	0.75	-0.5
3,344,480	-		DZA65_RS15420	0.75	+0.1
3,344,480	-		DZA65_RS15420	0.75	+0.1
3,344,488	+		DZA65_RS15420	0.75	-0.2
3,344,489	-		DZA65_RS15420	0.75	-0.3
3,344,539	+		DZA65_RS15420	0.78	-0.5
3,344,539	+		DZA65_RS15420	0.78	-1.4
3,344,540	-		DZA65_RS15420	0.78	-0.8
3,344,566	+		DZA65_RS15420	0.79	-0.9
3,344,647	-		DZA65_RS15420	0.83	-3.0
3,344,815	+				+1.0
3,344,816	-				+0.7
3,344,816	-				+1.6
3,344,846	+				+1.0
3,344,846	+				-0.6
3,344,846	+				+0.2
3,344,846	+				+1.0
3,344,846	+				-1.2
3,344,846	+				-0.6
3,344,846	+				+0.0
3,344,847	-				+0.8
3,344,847	-				+0.7
3,344,847	-				-0.1
3,344,847	-				-0.2
3,344,847	-				+1.2
3,344,888	+				-2.0
3,344,889	-				+1.0
3,344,981	+				-1.0
3,344,981	+				-0.2
3,344,983	+				+0.4
3,344,983	+				+0.9
3,344,983	+				-0.1
3,344,991	+				+0.2
3,344,991	+				+1.2
3,344,991	+				+0.8
3,344,991	+				+0.8
3,344,991	+				+1.0
3,344,992	-				+0.2
3,344,992	-				+0.0
3,344,992	-				+0.6
3,344,992	-				+0.4
3,344,993	+				-3.2
3,344,993	+				-0.1
3,344,993	+				-0.9
3,344,993	+				-0.4
3,344,993	+				+0.6
3,344,993	+				-0.9
3,344,993	+				+0.6
3,344,993	+				-0.6
3,344,993	+				-0.6
3,344,993	+				-1.0
3,344,993	+				-0.4
3,344,993	+				-0.6
3,344,994	-				+0.7
3,344,994	-				+0.4
3,344,994	-				-0.8
3,344,994	-				-1.2
3,344,994	-				-0.2
3,344,994	-				+0.6
3,344,994	-				-1.2
3,344,994	-				-0.2
3,344,994	-				+0.2
3,344,994	-				-0.4
3,344,995	+				+0.9
3,344,995	+				+1.1
3,344,995	+				+0.5
3,344,995	+				+0.4
3,344,996	-				-0.3
3,344,996	-				+0.4
3,344,996	-				+0.3
3,345,040	+				-1.0
3,345,040	+				+1.2
3,345,041	-				-1.5
3,345,042	+				-0.2
3,345,043	-				-0.1
3,345,102	+				+1.7
3,345,102	+				+0.9
3,345,103	-				-0.4
3,345,103	-				-0.4
3,345,103	-				+0.4
3,345,103	-				+0.4
3,345,103	-				-1.4
3,345,103	-				+1.2
3,345,103	-				+0.1
3,345,159	+				-0.9
3,345,213	+		DZA65_RS15425	0.16	-1.6
3,345,214	-		DZA65_RS15425	0.16	+0.5
3,345,252	+		DZA65_RS15425	0.22	+0.2
3,345,252	+		DZA65_RS15425	0.22	-1.4
3,345,253	-		DZA65_RS15425	0.22	+0.2
3,345,285	+		DZA65_RS15425	0.27	+0.7
3,345,285	+		DZA65_RS15425	0.27	+1.6
3,345,285	+		DZA65_RS15425	0.27	-1.0
3,345,286	-		DZA65_RS15425	0.28	-2.1
3,345,305	+		DZA65_RS15425	0.31	+0.4
3,345,306	-		DZA65_RS15425	0.31	-2.0
3,345,306	-		DZA65_RS15425	0.31	+0.9
3,345,350	+		DZA65_RS15425	0.38	+1.0
3,345,351	-		DZA65_RS15425	0.38	+0.4
3,345,351	-		DZA65_RS15425	0.38	-1.2
3,345,351	-		DZA65_RS15425	0.38	+0.0
3,345,400	-		DZA65_RS15425	0.46	+0.8
3,345,462	-		DZA65_RS15425	0.56	-1.3
3,345,470	+		DZA65_RS15425	0.57	+0.4
3,345,470	+		DZA65_RS15425	0.57	-1.9
3,345,470	+		DZA65_RS15425	0.57	-0.0
3,345,470	+		DZA65_RS15425	0.57	-1.0
3,345,471	-		DZA65_RS15425	0.57	+0.6
3,345,471	-		DZA65_RS15425	0.57	-0.8
3,345,471	-		DZA65_RS15425	0.57	-1.2
3,345,471	-		DZA65_RS15425	0.57	-2.0
3,345,471	-		DZA65_RS15425	0.57	-0.8
3,345,471	-		DZA65_RS15425	0.57	-0.4
3,345,471	-		DZA65_RS15425	0.57	-0.6
3,345,509	+		DZA65_RS15425	0.63	+0.8
3,345,509	+		DZA65_RS15425	0.63	+0.7
3,345,509	+		DZA65_RS15425	0.63	-1.0
3,345,509	+		DZA65_RS15425	0.63	+0.1
3,345,509	+		DZA65_RS15425	0.63	-0.4
3,345,509	+		DZA65_RS15425	0.63	+0.2
3,345,509	+		DZA65_RS15425	0.63	+1.2
3,345,510	-		DZA65_RS15425	0.63	+0.6
3,345,510	-		DZA65_RS15425	0.63	-1.2
3,345,510	-		DZA65_RS15425	0.63	+0.1
3,345,510	-		DZA65_RS15425	0.63	+1.4
3,345,513	+		DZA65_RS15425	0.64	-1.1
3,345,514	-		DZA65_RS15425	0.64	+0.1
3,345,514	-		DZA65_RS15425	0.64	-0.0
3,345,524	+		DZA65_RS15425	0.65	-1.2
3,345,524	+		DZA65_RS15425	0.65	+0.2
3,345,524	+		DZA65_RS15425	0.65	-1.6
3,345,524	+		DZA65_RS15425	0.65	-0.5
3,345,524	+		DZA65_RS15425	0.65	+1.8
3,345,524	+		DZA65_RS15425	0.65	-2.0
3,345,524	+		DZA65_RS15425	0.65	-0.6
3,345,524	+		DZA65_RS15425	0.65	+0.0
3,345,524	+		DZA65_RS15425	0.65	+0.4
3,345,524	+		DZA65_RS15425	0.65	+0.2
3,345,525	-		DZA65_RS15425	0.66	-0.6
3,345,525	-		DZA65_RS15425	0.66	-0.9
3,345,525	-		DZA65_RS15425	0.66	+0.4
3,345,525	-		DZA65_RS15425	0.66	-0.5
3,345,525	-		DZA65_RS15425	0.66	-1.6
3,345,525	-		DZA65_RS15425	0.66	-0.2
3,345,525	-		DZA65_RS15425	0.66	+0.8
3,345,525	-		DZA65_RS15425	0.66	+0.6
3,345,663	-		DZA65_RS15425	0.87	-0.2
3,345,696	+				+1.1
3,345,727	+				-0.2
3,345,727	+				+0.4
3,345,727	+				+0.0
3,345,727	+				+0.4
3,345,727	+				-0.3
3,345,727	+				-2.8
3,345,727	+				-0.7
3,345,727	+				-0.9
3,345,727	+				+1.1
3,345,727	+				+0.7
3,345,727	+				-2.3
3,345,728	-				-0.3
3,345,728	-				-0.9
3,345,728	-				+0.4
3,345,728	-				+0.4
3,345,728	-				+0.1
3,345,728	-				-1.0
3,345,728	-				+0.6
3,345,728	-				-2.2
3,345,768	-				+0.4
3,345,781	+				+0.3
3,345,781	+				-1.0
3,345,854	+		DZA65_RS15430	0.13	-1.1
3,345,854	+		DZA65_RS15430	0.13	-0.8
3,345,855	-		DZA65_RS15430	0.13	+0.5
3,345,881	+		DZA65_RS15430	0.17	-0.9
3,345,881	+		DZA65_RS15430	0.17	-0.6
3,345,881	+		DZA65_RS15430	0.17	+0.4
3,345,966	+		DZA65_RS15430	0.29	+0.2
3,345,967	-		DZA65_RS15430	0.30	-0.1
3,346,148	+		DZA65_RS15430	0.56	+0.6
3,346,149	-		DZA65_RS15430	0.56	+0.9
3,346,192	+		DZA65_RS15430	0.63	+0.4
3,346,193	-		DZA65_RS15430	0.63	-0.7
3,346,234	-		DZA65_RS15430	0.69	-0.0
3,346,267	+		DZA65_RS15430	0.74	-2.0
3,346,341	+		DZA65_RS15430	0.85	+0.9
3,346,349	+		DZA65_RS15430	0.86	+0.6
3,346,349	+		DZA65_RS15430	0.86	-0.5
3,346,349	+		DZA65_RS15430	0.86	+0.6
3,346,349	+		DZA65_RS15430	0.86	+1.1
3,346,349	+				+1.2
3,346,349	+		DZA65_RS15430	0.86	+0.4
3,346,349	+		DZA65_RS15430	0.86	-1.4
3,346,349	+		DZA65_RS15430	0.86	+1.4
3,346,349	+		DZA65_RS15430	0.86	-1.2
3,346,349	+		DZA65_RS15430	0.86	-2.1
3,346,349	+		DZA65_RS15430	0.86	+0.2
3,346,350	-		DZA65_RS15430	0.86	+2.0
3,346,350	-		DZA65_RS15430	0.86	+0.6
3,346,350	-		DZA65_RS15430	0.86	-0.4
3,346,350	-		DZA65_RS15430	0.86	+2.1
3,346,350	-		DZA65_RS15430	0.86	-0.0
3,346,350	-		DZA65_RS15430	0.86	-0.9
3,346,350	-		DZA65_RS15430	0.86	+1.0
3,346,350	-		DZA65_RS15430	0.86	-0.5
3,346,350	-		DZA65_RS15430	0.86	+1.2
3,346,350	-		DZA65_RS15430	0.86	-2.0
3,346,350	-		DZA65_RS15430	0.86	-2.3
3,346,350	-		DZA65_RS15430	0.86	+0.2
3,346,350	-		DZA65_RS15430	0.86	+1.7
3,346,350	-		DZA65_RS15430	0.86	+0.1
3,346,350	-		DZA65_RS15430	0.86	-0.5
3,346,352	+		DZA65_RS15430	0.86	-0.6
3,346,352	+		DZA65_RS15430	0.86	-1.4
3,346,393	-				+0.7
3,346,398	+				+0.2
3,346,399	-				-0.8
3,346,399	-				-0.3
3,346,399	-				-1.9
3,346,399	-				+0.9
3,346,435	+				+0.4
3,346,435	+				+0.5
3,346,436	-				-0.6
3,346,436	-				+0.6
3,346,446	+				+0.5
3,346,447	-				+0.2
3,346,447	-				+1.1
3,346,447	-				-0.1
3,346,476	+				-2.0
3,346,476	+				-1.0
3,346,476	+				-0.5
3,346,476	+				-0.5
3,346,476	+				-0.3
3,346,476	+				-1.1
3,346,480	+				-1.6
3,346,480	+				-0.3
3,346,480	+				-0.2
3,346,480	+				-0.0
3,346,480	+				+0.4
3,346,480	+				+0.4
3,346,480	+				-0.1
3,346,480	+				-2.2
3,346,481	-				-0.8
3,346,481	-				+0.8
3,346,523	+				+2.9
3,346,523	+				+0.3
3,346,523	+				-1.2
3,346,524	-				-0.2
3,346,524	-				+3.4
3,346,524	-				+1.3
3,346,524	-				-0.0
3,346,524	-				+0.1
3,346,537	-				-0.3
3,346,554	-				+1.1
3,346,594	-				-0.1
3,346,595	+				+0.7
3,346,595	+				+1.6
3,346,595	+				+2.7
3,346,595	+				-1.4
3,346,596	-				-0.2
3,346,663	-				-3.5
3,346,663	-				-0.0