Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15175

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,301,385	+		DZA65_RS15165	0.48	-0.8
3,301,386	-		DZA65_RS15165	0.48	-0.7
3,301,386	-		DZA65_RS15165	0.48	-2.1
3,301,386	-		DZA65_RS15165	0.48	+0.9
3,301,386	-		DZA65_RS15165	0.48	+0.5
3,301,415	+		DZA65_RS15165	0.53	-0.5
3,301,416	-		DZA65_RS15165	0.53	+0.1
3,301,528	+		DZA65_RS15165	0.71	+0.7
3,301,529	-		DZA65_RS15165	0.71	+0.3
3,301,611	-		DZA65_RS15165	0.84	+0.1
3,301,676	+				-1.0
3,301,704	+				-0.8
3,301,704	+				-1.2
3,301,704	+				+1.8
3,301,705	-				-1.0
3,301,780	+				+1.4
3,301,783	-				-1.5
3,301,812	+				+0.6
3,301,813	-				-0.4
3,301,814	+				-0.4
3,301,814	+				+1.3
3,301,814	+				-1.7
3,301,815	-				-1.4
3,301,815	-				+1.3
3,301,876	+		DZA65_RS15170	0.12	-0.7
3,301,876	+		DZA65_RS15170	0.12	+0.8
3,301,876	+		DZA65_RS15170	0.12	+1.0
3,301,876	+		DZA65_RS15170	0.12	+0.1
3,301,876	+		DZA65_RS15170	0.12	-1.8
3,301,877	-		DZA65_RS15170	0.12	+1.1
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	-0.4
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	+0.1
3,301,877	-		DZA65_RS15170	0.12	+0.6
3,301,877	-		DZA65_RS15170	0.12	-0.0
3,301,878	+		DZA65_RS15170	0.13	+1.7
3,301,878	+		DZA65_RS15170	0.13	+1.3
3,301,878	+		DZA65_RS15170	0.13	+0.9
3,301,879	-		DZA65_RS15170	0.13	+0.7
3,301,879	-		DZA65_RS15170	0.13	+1.4
3,301,879	-		DZA65_RS15170	0.13	-0.7
3,301,879	-		DZA65_RS15170	0.13	-2.1
3,301,951	-		DZA65_RS15170	0.27	+0.1
3,301,951	-		DZA65_RS15170	0.27	-0.4
3,301,951	-		DZA65_RS15170	0.27	-1.4
3,301,951	-		DZA65_RS15170	0.27	-0.3
3,301,959	+		DZA65_RS15170	0.28	-0.2
3,301,959	+		DZA65_RS15170	0.28	-0.7
3,301,959	+		DZA65_RS15170	0.28	+1.3
3,301,959	+		DZA65_RS15170	0.28	+0.0
3,301,959	+		DZA65_RS15170	0.28	-0.5
3,301,959	+				+2.7
3,301,959	+		DZA65_RS15170	0.28	-2.2
3,301,959	+		DZA65_RS15170	0.28	+0.2
3,301,959	+		DZA65_RS15170	0.28	+0.0
3,301,960	-		DZA65_RS15170	0.28	+0.6
3,301,960	-		DZA65_RS15170	0.28	+0.7
3,301,960	-		DZA65_RS15170	0.28	+0.4
3,301,960	-		DZA65_RS15170	0.28	-0.2
3,301,960	-		DZA65_RS15170	0.28	-0.7
3,301,960	-		DZA65_RS15170	0.28	+0.7
3,301,963	+		DZA65_RS15170	0.29	+0.1
3,301,963	+		DZA65_RS15170	0.29	+0.7
3,301,963	+		DZA65_RS15170	0.29	-0.6
3,301,963	+		DZA65_RS15170	0.29	-1.1
3,301,963	+		DZA65_RS15170	0.29	-0.6
3,301,963	+		DZA65_RS15170	0.29	+0.6
3,301,963	+		DZA65_RS15170	0.29	-0.4
3,301,964	-		DZA65_RS15170	0.29	-1.7
3,301,964	-		DZA65_RS15170	0.29	+0.0
3,301,964	-		DZA65_RS15170	0.29	-1.2
3,301,964	-		DZA65_RS15170	0.29	+0.3
3,301,964	-		DZA65_RS15170	0.29	-0.3
3,301,964	-		DZA65_RS15170	0.29	+0.2
3,301,964	-		DZA65_RS15170	0.29	+0.5
3,301,964	-		DZA65_RS15170	0.29	+0.8
3,301,964	-		DZA65_RS15170	0.29	+0.3
3,301,964	-		DZA65_RS15170	0.29	-0.2
3,302,028	+		DZA65_RS15170	0.41	-0.1
3,302,028	+		DZA65_RS15170	0.41	+0.9
3,302,029	-		DZA65_RS15170	0.41	-1.7
3,302,077	+		DZA65_RS15170	0.50	-2.4
3,302,077	+		DZA65_RS15170	0.50	-1.0
3,302,078	-		DZA65_RS15170	0.51	+0.3
3,302,078	-		DZA65_RS15170	0.51	-2.0
3,302,112	-		DZA65_RS15170	0.57	-0.2
3,302,132	-		DZA65_RS15170	0.61	-1.7
3,302,160	+				-0.2
3,302,161	-		DZA65_RS15170	0.66	-0.1
3,302,161	-		DZA65_RS15170	0.66	+0.3
3,302,163	+		DZA65_RS15170	0.67	+0.7
3,302,163	+		DZA65_RS15170	0.67	+0.8
3,302,164	-		DZA65_RS15170	0.67	+1.2
3,302,227	+		DZA65_RS15170	0.79	+0.6
3,302,237	+		DZA65_RS15170	0.81	-0.2
3,302,263	+		DZA65_RS15170	0.86	-0.4
3,302,263	+		DZA65_RS15170	0.86	-2.0
3,302,265	+		DZA65_RS15170	0.86	-0.0
3,302,265	+		DZA65_RS15170	0.86	-0.5
3,302,297	-				-1.4
3,302,297	-				-0.8
3,302,321	+				-0.9
3,302,322	-				+0.3
3,302,322	-				-0.7
3,302,330	-				+0.6
3,302,340	+				-0.8
3,302,341	-				-1.2
3,302,341	-				-0.4
3,302,462	+		DZA65_RS15175	0.26	-2.8
3,302,503	+		DZA65_RS15175	0.36	-0.3
3,302,504	-		DZA65_RS15175	0.36	-3.0
3,302,553	+		DZA65_RS15175	0.47	-0.7
3,302,554	-		DZA65_RS15175	0.47	+0.4
3,302,707	+		DZA65_RS15175	0.83	-0.4
3,302,722	+		DZA65_RS15175	0.86	-1.4
3,302,786	+				+1.3
3,302,786	+				+1.6
3,302,786	+				+0.0
3,302,787	-				+0.8
3,302,787	-				-0.7
3,302,814	+				-1.2
3,302,857	+		DZA65_RS15180	0.17	-1.7
3,302,858	-		DZA65_RS15180	0.17	-1.0
3,302,858	-		DZA65_RS15180	0.17	-1.5
3,302,858	-		DZA65_RS15180	0.17	+1.2
3,302,858	-		DZA65_RS15180	0.17	-0.3
3,302,858	-		DZA65_RS15180	0.17	-0.2
3,302,864	-		DZA65_RS15180	0.19	+0.8
3,302,876	+		DZA65_RS15180	0.21	-0.8
3,302,876	+		DZA65_RS15180	0.21	-0.0
3,302,881	+		DZA65_RS15180	0.23	+0.3
3,302,881	+		DZA65_RS15180	0.23	-0.2
3,302,881	+		DZA65_RS15180	0.23	+0.2
3,302,881	+		DZA65_RS15180	0.23	+1.0
3,302,881	+		DZA65_RS15180	0.23	-0.0
3,302,881	+		DZA65_RS15180	0.23	-0.2
3,302,881	+		DZA65_RS15180	0.23	+0.1
3,302,881	+		DZA65_RS15180	0.23	-0.4
3,302,882	-		DZA65_RS15180	0.23	+0.4
3,302,882	-		DZA65_RS15180	0.23	-0.1
3,302,882	-		DZA65_RS15180	0.23	-0.3
3,302,882	-		DZA65_RS15180	0.23	-0.2
3,302,882	-		DZA65_RS15180	0.23	+1.1
3,302,882	-		DZA65_RS15180	0.23	+1.3
3,302,882	-		DZA65_RS15180	0.23	+0.2
3,302,882	-		DZA65_RS15180	0.23	-0.1
3,302,882	-		DZA65_RS15180	0.23	-0.3
3,302,904	+				-0.1
3,302,904	+		DZA65_RS15180	0.28	+0.1
3,303,044	+		DZA65_RS15180	0.61	+0.3
3,303,044	+		DZA65_RS15180	0.61	-0.5
3,303,044	+		DZA65_RS15180	0.61	-0.4
3,303,044	+		DZA65_RS15180	0.61	+0.2
3,303,044	+		DZA65_RS15180	0.61	-1.1
3,303,045	-		DZA65_RS15180	0.61	-0.7
3,303,045	-		DZA65_RS15180	0.61	-1.0
3,303,045	-		DZA65_RS15180	0.61	-0.5
3,303,045	-		DZA65_RS15180	0.61	-1.0
3,303,045	-		DZA65_RS15180	0.61	-0.1
3,303,045	-		DZA65_RS15180	0.61	-0.7
3,303,045	-		DZA65_RS15180	0.61	+0.9
3,303,045	-		DZA65_RS15180	0.61	-1.2
3,303,045	-		DZA65_RS15180	0.61	+0.3
3,303,045	-		DZA65_RS15180	0.61	+2.1
3,303,052	-		DZA65_RS15180	0.63	+2.3
3,303,072	+		DZA65_RS15180	0.67	+0.5
3,303,072	+		DZA65_RS15180	0.67	+0.1
3,303,073	-		DZA65_RS15180	0.68	+0.3
3,303,073	-		DZA65_RS15180	0.68	-0.5
3,303,073	-		DZA65_RS15180	0.68	+1.1
3,303,097	-		DZA65_RS15180	0.73	+0.0
3,303,145	+		DZA65_RS15180	0.85	+1.1
3,303,145	+		DZA65_RS15180	0.85	-1.5
3,303,145	+		DZA65_RS15180	0.85	-0.7
3,303,145	+		DZA65_RS15180	0.85	-2.2
3,303,145	+		DZA65_RS15180	0.85	-0.7
3,303,145	+		DZA65_RS15180	0.85	-1.2
3,303,146	-		DZA65_RS15180	0.85	-0.1
3,303,146	-		DZA65_RS15180	0.85	-2.5
3,303,146	-		DZA65_RS15180	0.85	+2.7
3,303,146	-		DZA65_RS15180	0.85	-1.2
3,303,146	-		DZA65_RS15180	0.85	+0.9
3,303,146	-		DZA65_RS15180	0.85	-1.1
3,303,146	-		DZA65_RS15180	0.85	-2.5
3,303,146	-		DZA65_RS15180	0.85	-1.7
3,303,149	+		DZA65_RS15180	0.85	+0.5
3,303,149	+		DZA65_RS15180	0.85	-0.5
3,303,149	+		DZA65_RS15180	0.85	-2.2
3,303,149	+		DZA65_RS15180	0.85	+1.3
3,303,149	+		DZA65_RS15180	0.85	-0.4
3,303,149	+		DZA65_RS15180	0.85	+0.9
3,303,150	-		DZA65_RS15180	0.86	+1.3
3,303,150	-		DZA65_RS15180	0.86	-0.0
3,303,150	-		DZA65_RS15180	0.86	-0.7
3,303,150	-		DZA65_RS15180	0.86	+0.9
3,303,167	-		DZA65_RS15180	0.90	+1.0
3,303,167	-		DZA65_RS15180	0.90	-1.5
3,303,230	-				-0.1
3,303,233	-				-1.0
3,303,271	+		DZA65_RS15185	0.14	+0.1
3,303,272	-		DZA65_RS15185	0.14	-0.9
3,303,306	+		DZA65_RS15185	0.21	-0.3
3,303,306	+		DZA65_RS15185	0.21	-1.0
3,303,306	+		DZA65_RS15185	0.21	-0.2
3,303,307	-		DZA65_RS15185	0.21	-0.1
3,303,307	-		DZA65_RS15185	0.21	-0.8
3,303,310	+		DZA65_RS15185	0.22	+1.2
3,303,311	-		DZA65_RS15185	0.22	+0.5
3,303,311	-		DZA65_RS15185	0.22	-0.4
3,303,311	-		DZA65_RS15185	0.22	-0.5
3,303,311	-		DZA65_RS15185	0.22	-0.6
3,303,311	-		DZA65_RS15185	0.22	+0.3
3,303,311	-		DZA65_RS15185	0.22	-2.2
3,303,336	+		DZA65_RS15185	0.27	-0.7
3,303,337	-		DZA65_RS15185	0.28	-0.1
3,303,337	-		DZA65_RS15185	0.28	-0.1
3,303,337	-		DZA65_RS15185	0.28	+0.6
3,303,396	+		DZA65_RS15185	0.39	+0.9
3,303,444	+		DZA65_RS15185	0.49	-1.0
3,303,445	-		DZA65_RS15185	0.49	-1.1
3,303,445	-		DZA65_RS15185	0.49	-1.8
3,303,445	-		DZA65_RS15185	0.49	-0.4
3,303,445	-		DZA65_RS15185	0.49	+0.6
3,303,495	+		DZA65_RS15185	0.59	+0.3
3,303,495	+		DZA65_RS15185	0.59	+0.7
3,303,536	+		DZA65_RS15185	0.67	-0.4
3,303,536	+		DZA65_RS15185	0.67	+2.0
3,303,536	+		DZA65_RS15185	0.67	+1.1
3,303,536	+		DZA65_RS15185	0.67	-1.0
3,303,537	-		DZA65_RS15185	0.68	-0.7
3,303,537	-		DZA65_RS15185	0.68	-0.7
3,303,537	-		DZA65_RS15185	0.68	+1.2
3,303,537	-		DZA65_RS15185	0.68	-1.2
3,303,537	-		DZA65_RS15185	0.68	-0.6
3,303,537	-		DZA65_RS15185	0.68	-1.0
3,303,548	+		DZA65_RS15185	0.70	-0.7
3,303,549	-		DZA65_RS15185	0.70	-0.2
3,303,561	+		DZA65_RS15185	0.72	-0.2
3,303,561	+		DZA65_RS15185	0.72	-0.9
3,303,561	+		DZA65_RS15185	0.72	-0.2
3,303,561	+		DZA65_RS15185	0.72	+0.9
3,303,561	+		DZA65_RS15185	0.72	-2.0
3,303,562	-		DZA65_RS15185	0.73	-0.5
3,303,565	+		DZA65_RS15185	0.73	+2.9
3,303,565	+		DZA65_RS15185	0.73	-0.7
3,303,565	+		DZA65_RS15185	0.73	-1.2
3,303,565	+		DZA65_RS15185	0.73	-1.2
3,303,566	-		DZA65_RS15185	0.73	-0.3
3,303,585	+		DZA65_RS15185	0.77	+0.3
3,303,593	+		DZA65_RS15185	0.79	+0.8
3,303,593	+		DZA65_RS15185	0.79	-0.4
3,303,594	-		DZA65_RS15185	0.79	-0.1
3,303,594	-		DZA65_RS15185	0.79	+0.5
3,303,605	-		DZA65_RS15185	0.81	-1.2
3,303,605	-		DZA65_RS15185	0.81	+0.1
3,303,641	+		DZA65_RS15185	0.89	-0.4
3,303,642	-		DZA65_RS15185	0.89	+1.9
3,303,691	+				-0.3
3,303,692	-				-0.5