Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15160

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,299,862	+		DZA65_RS15145	0.53	-1.3
3,299,862	+		DZA65_RS15145	0.53	+0.1
3,299,862	+		DZA65_RS15145	0.53	-0.7
3,299,862	+		DZA65_RS15145	0.53	-0.1
3,299,862	+		DZA65_RS15145	0.53	-0.0
3,299,863	-		DZA65_RS15145	0.54	+1.2
3,299,863	-		DZA65_RS15145	0.54	-0.5
3,299,863	-		DZA65_RS15145	0.54	-0.6
3,299,863	-		DZA65_RS15145	0.54	-0.5
3,299,863	-		DZA65_RS15145	0.54	-0.3
3,299,954	-		DZA65_RS15145	0.85	+0.3
3,299,962	+		DZA65_RS15145	0.88	+1.2
3,299,963	-		DZA65_RS15145	0.88	-0.8
3,299,999	+				-0.5
3,299,999	+				+0.5
3,299,999	+				-1.3
3,300,000	-				+0.7
3,300,000	-				-0.1
3,300,062	+		DZA65_RS15150	0.28	-1.6
3,300,062	+		DZA65_RS15150	0.28	+1.0
3,300,063	-		DZA65_RS15150	0.28	+0.9
3,300,069	+		DZA65_RS15150	0.31	+1.7
3,300,110	-		DZA65_RS15150	0.48	+1.7
3,300,110	-		DZA65_RS15150	0.48	-1.3
3,300,186	+		DZA65_RS15150	0.79	+0.7
3,300,186	+		DZA65_RS15150	0.79	-0.7
3,300,186	+		DZA65_RS15150	0.79	-1.7
3,300,186	+		DZA65_RS15150	0.79	+1.2
3,300,187	-		DZA65_RS15150	0.79	+0.6
3,300,195	+		DZA65_RS15150	0.83	-0.2
3,300,219	+				-2.5
3,300,219	+				-0.2
3,300,220	-				+2.1
3,300,252	+				-0.2
3,300,252	+				-2.7
3,300,252	+				+0.8
3,300,252	+				+0.9
3,300,252	+				-0.3
3,300,252	+				+0.6
3,300,253	-				-0.3
3,300,253	-				+0.5
3,300,253	-				-0.3
3,300,255	+				+0.2
3,300,255	+				-0.8
3,300,255	+				+1.3
3,300,263	+				+0.7
3,300,377	+		DZA65_RS15155	0.24	-1.4
3,300,377	+		DZA65_RS15155	0.24	+0.5
3,300,377	+		DZA65_RS15155	0.24	-0.8
3,300,377	+		DZA65_RS15155	0.24	-0.5
3,300,377	+		DZA65_RS15155	0.24	-0.8
3,300,377	+		DZA65_RS15155	0.24	+0.3
3,300,377	+		DZA65_RS15155	0.24	-0.8
3,300,377	+		DZA65_RS15155	0.24	-0.3
3,300,377	+		DZA65_RS15155	0.24	-1.0
3,300,378	-		DZA65_RS15155	0.24	+0.2
3,300,378	-		DZA65_RS15155	0.24	-1.1
3,300,378	-		DZA65_RS15155	0.24	+1.3
3,300,378	-		DZA65_RS15155	0.24	+0.2
3,300,406	+		DZA65_RS15155	0.29	-0.4
3,300,406	+		DZA65_RS15155	0.29	-0.9
3,300,406	+		DZA65_RS15155	0.29	+0.0
3,300,407	-		DZA65_RS15155	0.29	-1.5
3,300,485	-		DZA65_RS15155	0.42	-0.5
3,300,485	-		DZA65_RS15155	0.42	-1.1
3,300,485	-		DZA65_RS15155	0.42	-0.2
3,300,735	+		DZA65_RS15155	0.83	-0.0
3,300,735	+		DZA65_RS15155	0.83	+0.7
3,300,759	+		DZA65_RS15155	0.87	-1.5
3,300,784	+				+0.3
3,300,832	+				-0.1
3,300,862	+		DZA65_RS15160	0.11	-0.3
3,300,899	+		DZA65_RS15160	0.25	+0.9
3,300,903	+		DZA65_RS15160	0.27	+0.3
3,300,903	+		DZA65_RS15160	0.27	-0.6
3,300,938	+		DZA65_RS15160	0.41	-0.7
3,300,938	+		DZA65_RS15160	0.41	-2.3
3,300,938	+		DZA65_RS15160	0.41	-0.3
3,300,938	+		DZA65_RS15160	0.41	-0.7
3,300,938	+		DZA65_RS15160	0.41	-1.1
3,300,946	-		DZA65_RS15160	0.44	-2.1
3,300,946	-		DZA65_RS15160	0.44	+0.7
3,300,946	-				-0.7
3,300,974	+		DZA65_RS15160	0.55	-0.3
3,300,974	+		DZA65_RS15160	0.55	-0.1
3,300,974	+		DZA65_RS15160	0.55	+0.3
3,300,974	+		DZA65_RS15160	0.55	+0.3
3,300,974	+		DZA65_RS15160	0.55	+2.7
3,300,975	-		DZA65_RS15160	0.56	+0.2
3,300,975	-				+0.3
3,300,975	-		DZA65_RS15160	0.56	-1.8
3,301,062	+				-0.0
3,301,115	+				-0.7
3,301,115	+				-0.5
3,301,116	-				-2.5
3,301,116	-				+0.5
3,301,116	-				+0.3
3,301,116	-				-0.3
3,301,117	+				-0.9
3,301,118	-				-1.3
3,301,249	+		DZA65_RS15165	0.26	+0.4
3,301,249	+		DZA65_RS15165	0.26	+0.9
3,301,249	+		DZA65_RS15165	0.26	+0.3
3,301,250	-		DZA65_RS15165	0.27	+1.3
3,301,250	-		DZA65_RS15165	0.27	+0.2
3,301,250	-		DZA65_RS15165	0.27	+0.3
3,301,292	+		DZA65_RS15165	0.33	+0.5
3,301,318	+		DZA65_RS15165	0.37	+1.1
3,301,318	+		DZA65_RS15165	0.37	+0.1
3,301,318	+		DZA65_RS15165	0.37	-1.7
3,301,318	+		DZA65_RS15165	0.37	+1.6
3,301,318	+		DZA65_RS15165	0.37	-0.2
3,301,318	+		DZA65_RS15165	0.37	-0.4
3,301,318	+		DZA65_RS15165	0.37	-0.2
3,301,318	+		DZA65_RS15165	0.37	-1.8
3,301,318	+		DZA65_RS15165	0.37	+0.3
3,301,318	+		DZA65_RS15165	0.37	-0.9
3,301,318	+		DZA65_RS15165	0.37	+1.0
3,301,318	+		DZA65_RS15165	0.37	+0.1
3,301,318	+		DZA65_RS15165	0.37	-0.7
3,301,318	+		DZA65_RS15165	0.37	-1.5
3,301,318	+		DZA65_RS15165	0.37	+0.1
3,301,318	+		DZA65_RS15165	0.37	-1.7
3,301,319	-		DZA65_RS15165	0.37	+1.1
3,301,319	-		DZA65_RS15165	0.37	-0.2
3,301,319	-		DZA65_RS15165	0.37	-0.3
3,301,319	-		DZA65_RS15165	0.37	-1.4
3,301,319	-		DZA65_RS15165	0.37	-0.8
3,301,319	-				+0.3
3,301,319	-		DZA65_RS15165	0.37	-0.5
3,301,319	-		DZA65_RS15165	0.37	-0.7
3,301,319	-		DZA65_RS15165	0.37	-0.5
3,301,319	-		DZA65_RS15165	0.37	+0.3
3,301,319	-		DZA65_RS15165	0.37	+0.3
3,301,319	-		DZA65_RS15165	0.37	+0.9
3,301,319	-		DZA65_RS15165	0.37	-1.2
3,301,322	+		DZA65_RS15165	0.38	-0.9
3,301,323	-		DZA65_RS15165	0.38	+0.1
3,301,385	+		DZA65_RS15165	0.48	-0.8
3,301,386	-		DZA65_RS15165	0.48	-0.7
3,301,386	-		DZA65_RS15165	0.48	-2.1
3,301,386	-		DZA65_RS15165	0.48	+0.9
3,301,386	-		DZA65_RS15165	0.48	+0.5
3,301,415	+		DZA65_RS15165	0.53	-0.5
3,301,416	-		DZA65_RS15165	0.53	+0.1
3,301,528	+		DZA65_RS15165	0.71	+0.7
3,301,529	-		DZA65_RS15165	0.71	+0.3
3,301,611	-		DZA65_RS15165	0.84	+0.1
3,301,676	+				-1.0
3,301,704	+				-0.8
3,301,704	+				-1.2
3,301,704	+				+1.8
3,301,705	-				-1.0
3,301,780	+				+1.4
3,301,783	-				-1.5
3,301,812	+				+0.6
3,301,813	-				-0.4
3,301,814	+				-0.4
3,301,814	+				+1.3
3,301,814	+				-1.7
3,301,815	-				-1.4
3,301,815	-				+1.3
3,301,876	+		DZA65_RS15170	0.12	-0.7
3,301,876	+		DZA65_RS15170	0.12	+0.8
3,301,876	+		DZA65_RS15170	0.12	+1.0
3,301,876	+		DZA65_RS15170	0.12	+0.1
3,301,876	+		DZA65_RS15170	0.12	-1.8
3,301,877	-		DZA65_RS15170	0.12	+1.1
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	-0.4
3,301,877	-		DZA65_RS15170	0.12	+0.3
3,301,877	-		DZA65_RS15170	0.12	+0.1
3,301,877	-		DZA65_RS15170	0.12	+0.6
3,301,877	-		DZA65_RS15170	0.12	-0.0
3,301,878	+		DZA65_RS15170	0.13	+1.7
3,301,878	+		DZA65_RS15170	0.13	+1.3
3,301,878	+		DZA65_RS15170	0.13	+0.9
3,301,879	-		DZA65_RS15170	0.13	+0.7
3,301,879	-		DZA65_RS15170	0.13	+1.4
3,301,879	-		DZA65_RS15170	0.13	-0.7
3,301,879	-		DZA65_RS15170	0.13	-2.1
3,301,951	-		DZA65_RS15170	0.27	+0.1
3,301,951	-		DZA65_RS15170	0.27	-0.4
3,301,951	-		DZA65_RS15170	0.27	-1.4
3,301,951	-		DZA65_RS15170	0.27	-0.3
3,301,959	+		DZA65_RS15170	0.28	-0.2
3,301,959	+		DZA65_RS15170	0.28	-0.7
3,301,959	+		DZA65_RS15170	0.28	+1.3
3,301,959	+		DZA65_RS15170	0.28	+0.0
3,301,959	+		DZA65_RS15170	0.28	-0.5
3,301,959	+				+2.7
3,301,959	+		DZA65_RS15170	0.28	-2.2
3,301,959	+		DZA65_RS15170	0.28	+0.2
3,301,959	+		DZA65_RS15170	0.28	+0.0
3,301,960	-		DZA65_RS15170	0.28	+0.6
3,301,960	-		DZA65_RS15170	0.28	+0.7
3,301,960	-		DZA65_RS15170	0.28	+0.4
3,301,960	-		DZA65_RS15170	0.28	-0.2
3,301,960	-		DZA65_RS15170	0.28	-0.7
3,301,960	-		DZA65_RS15170	0.28	+0.7
3,301,963	+		DZA65_RS15170	0.29	+0.1
3,301,963	+		DZA65_RS15170	0.29	+0.7
3,301,963	+		DZA65_RS15170	0.29	-0.6
3,301,963	+		DZA65_RS15170	0.29	-1.1
3,301,963	+		DZA65_RS15170	0.29	-0.6
3,301,963	+		DZA65_RS15170	0.29	+0.6
3,301,963	+		DZA65_RS15170	0.29	-0.4
3,301,964	-		DZA65_RS15170	0.29	-1.7
3,301,964	-		DZA65_RS15170	0.29	+0.0
3,301,964	-		DZA65_RS15170	0.29	-1.2
3,301,964	-		DZA65_RS15170	0.29	+0.3
3,301,964	-		DZA65_RS15170	0.29	-0.3
3,301,964	-		DZA65_RS15170	0.29	+0.2
3,301,964	-		DZA65_RS15170	0.29	+0.5
3,301,964	-		DZA65_RS15170	0.29	+0.8
3,301,964	-		DZA65_RS15170	0.29	+0.3
3,301,964	-		DZA65_RS15170	0.29	-0.2
3,302,028	+		DZA65_RS15170	0.41	-0.1
3,302,028	+		DZA65_RS15170	0.41	+0.9
3,302,029	-		DZA65_RS15170	0.41	-1.7
3,302,077	+		DZA65_RS15170	0.50	-2.4
3,302,077	+		DZA65_RS15170	0.50	-1.0
3,302,078	-		DZA65_RS15170	0.51	+0.3
3,302,078	-		DZA65_RS15170	0.51	-2.0