Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14850

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,235,737	-		DZA65_RS14840	0.78	-2.3
3,235,924	-				-0.9
3,235,945	+				-0.2
3,235,946	-				+0.6
3,235,946	-				-0.8
3,235,990	+				+0.7
3,235,991	-				-0.0
3,235,996	+				+1.8
3,235,996	+				-0.2
3,236,082	+		DZA65_RS14845	0.12	+1.5
3,236,083	-		DZA65_RS14845	0.12	+0.0
3,236,088	+		DZA65_RS14845	0.13	-0.4
3,236,088	+		DZA65_RS14845	0.13	+0.1
3,236,089	-		DZA65_RS14845	0.13	+1.3
3,236,089	-		DZA65_RS14845	0.13	-0.4
3,236,089	-		DZA65_RS14845	0.13	-0.1
3,236,102	+		DZA65_RS14845	0.16	-1.1
3,236,102	+		DZA65_RS14845	0.16	+0.3
3,236,102	+		DZA65_RS14845	0.16	+0.7
3,236,102	+		DZA65_RS14845	0.16	-0.2
3,236,196	+		DZA65_RS14845	0.35	+0.1
3,236,196	+		DZA65_RS14845	0.35	-0.3
3,236,211	+		DZA65_RS14845	0.38	-1.5
3,236,211	+		DZA65_RS14845	0.38	+0.0
3,236,212	-		DZA65_RS14845	0.39	+0.4
3,236,212	-		DZA65_RS14845	0.39	+0.5
3,236,212	-		DZA65_RS14845	0.39	+0.9
3,236,212	-		DZA65_RS14845	0.39	-0.1
3,236,212	-		DZA65_RS14845	0.39	+0.3
3,236,308	+		DZA65_RS14845	0.58	+0.6
3,236,309	-		DZA65_RS14845	0.59	+3.3
3,236,309	-		DZA65_RS14845	0.59	+1.5
3,236,322	+		DZA65_RS14845	0.61	-0.5
3,236,322	+		DZA65_RS14845	0.61	-0.3
3,236,322	+		DZA65_RS14845	0.61	-0.0
3,236,322	+		DZA65_RS14845	0.61	+0.6
3,236,322	+		DZA65_RS14845	0.61	-0.4
3,236,323	-		DZA65_RS14845	0.62	+1.3
3,236,323	-		DZA65_RS14845	0.62	-0.2
3,236,323	-		DZA65_RS14845	0.62	-0.0
3,236,323	-		DZA65_RS14845	0.62	-0.4
3,236,323	-		DZA65_RS14845	0.62	-0.3
3,236,323	-		DZA65_RS14845	0.62	-0.2
3,236,323	-		DZA65_RS14845	0.62	-0.6
3,236,323	-		DZA65_RS14845	0.62	-0.3
3,236,337	+		DZA65_RS14845	0.64	-0.9
3,236,337	+		DZA65_RS14845	0.64	+0.9
3,236,338	-		DZA65_RS14845	0.65	+0.5
3,236,373	+		DZA65_RS14845	0.72	+0.5
3,236,374	-		DZA65_RS14845	0.72	-0.7
3,236,374	-		DZA65_RS14845	0.72	-0.6
3,236,400	+		DZA65_RS14845	0.77	+0.6
3,236,400	+				+0.9
3,236,400	+		DZA65_RS14845	0.77	-1.4
3,236,400	+		DZA65_RS14845	0.77	+0.2
3,236,400	+		DZA65_RS14845	0.77	-1.5
3,236,400	+		DZA65_RS14845	0.77	-0.2
3,236,400	+		DZA65_RS14845	0.77	+0.4
3,236,400	+		DZA65_RS14845	0.77	-1.5
3,236,401	-		DZA65_RS14845	0.78	-1.1
3,236,401	-		DZA65_RS14845	0.78	-0.1
3,236,401	-		DZA65_RS14845	0.78	-0.0
3,236,491	+				+0.1
3,236,491	+				-0.1
3,236,491	+				-1.0
3,236,492	-				-1.0
3,236,492	-				-0.1
3,236,510	-				-1.3
3,236,686	-				+1.4
3,236,707	+				-0.5
3,236,707	+				+0.1
3,236,707	+				+0.1
3,236,708	-				-0.2
3,236,708	-				-0.4
3,236,730	+				-1.0
3,236,861	+		DZA65_RS14850	0.12	-0.0
3,237,070	-		DZA65_RS14850	0.21	+0.3
3,237,157	+		DZA65_RS14850	0.25	-0.1
3,237,285	-		DZA65_RS14850	0.30	+0.2
3,237,446	-		DZA65_RS14850	0.37	-0.4
3,237,492	-		DZA65_RS14850	0.39	-2.6
3,237,537	-		DZA65_RS14850	0.41	+0.7
3,237,537	-		DZA65_RS14850	0.41	-0.0
3,237,537	-		DZA65_RS14850	0.41	+0.9
3,237,537	-		DZA65_RS14850	0.41	-1.3
3,237,541	-		DZA65_RS14850	0.41	-1.2
3,237,657	+		DZA65_RS14850	0.46	-0.2
3,237,658	-		DZA65_RS14850	0.46	-0.3
3,237,732	-		DZA65_RS14850	0.49	-1.9
3,237,732	-		DZA65_RS14850	0.49	+0.3
3,237,867	+		DZA65_RS14850	0.55	+0.3
3,237,867	+		DZA65_RS14850	0.55	+0.1
3,237,867	+		DZA65_RS14850	0.55	-0.0
3,237,867	+		DZA65_RS14850	0.55	-0.4
3,237,867	+		DZA65_RS14850	0.55	+0.4
3,237,867	+		DZA65_RS14850	0.55	-0.0
3,237,867	+		DZA65_RS14850	0.55	+1.1
3,237,867	+		DZA65_RS14850	0.55	-0.2
3,237,867	+		DZA65_RS14850	0.55	-0.3
3,237,867	+		DZA65_RS14850	0.55	-0.2
3,237,868	-		DZA65_RS14850	0.55	-0.2
3,237,868	-		DZA65_RS14850	0.55	+1.0
3,237,868	-		DZA65_RS14850	0.55	+0.3
3,237,868	-		DZA65_RS14850	0.55	-0.4
3,237,868	-		DZA65_RS14850	0.55	+0.3
3,237,870	+		DZA65_RS14850	0.55	+0.3
3,237,871	-				+0.3
3,237,871	-		DZA65_RS14850	0.55	+1.2
3,238,307	-		DZA65_RS14850	0.74	-2.0
3,238,307	-		DZA65_RS14850	0.74	-3.2
3,238,323	+		DZA65_RS14850	0.75	-1.1
3,238,323	+		DZA65_RS14850	0.75	-3.0
3,238,323	+		DZA65_RS14850	0.75	+0.2
3,238,324	-		DZA65_RS14850	0.75	-0.3
3,238,476	+		DZA65_RS14850	0.82	-1.2
3,238,477	-		DZA65_RS14850	0.82	-0.3
3,238,482	+		DZA65_RS14850	0.82	-0.9
3,238,483	-		DZA65_RS14850	0.82	+1.6
3,238,520	+		DZA65_RS14850	0.83	+0.7
3,238,599	+		DZA65_RS14850	0.87	+0.1
3,238,599	+		DZA65_RS14850	0.87	+0.3
3,238,600	-		DZA65_RS14850	0.87	+1.1
3,238,661	+		DZA65_RS14850	0.90	-0.3
3,238,661	+		DZA65_RS14850	0.90	-1.0
3,238,662	-		DZA65_RS14850	0.90	+1.1
3,238,713	-				-0.4
3,238,763	-				-1.1
3,238,763	-				+0.6
3,238,829	+				+0.3
3,238,829	+				+1.6
3,238,829	+				+0.1
3,238,829	+				-0.6
3,238,829	+				-0.2
3,238,829	+				-0.4
3,238,829	+				-0.1
3,238,830	-				-1.3
3,238,830	-				+0.3
3,238,830	-				-1.7
3,238,830	-				-2.3
3,238,830	-				+0.3
3,238,830	-				-1.0
3,238,864	-				-0.4
3,238,902	+				+1.0
3,238,902	+				-2.7
3,238,902	+				-0.2
3,238,902	+				-2.0
3,238,902	+				+0.2
3,238,903	-				+2.0
3,238,903	-				-0.4
3,238,903	-				-2.5
3,238,903	-				-0.0
3,238,903	-				+0.7
3,238,903	-				-0.2
3,238,903	-				+0.3
3,238,903	-				+0.9
3,238,903	-				-0.4
3,238,903	-				-1.0
3,238,903	-				-0.9
3,238,903	-				+0.5
3,238,906	+				-1.9
3,238,906	+				+0.3
3,238,906	+				+1.5
3,238,906	+				-1.7
3,238,906	+				+0.0
3,238,906	+				+0.0
3,238,906	+				+0.1
3,238,906	+				-0.2
3,238,906	+				-0.4
3,238,906	+				-0.5
3,238,906	+				+0.2
3,238,906	+				+3.0
3,238,906	+				+1.7
3,238,907	-				+0.5
3,238,907	-				-0.5
3,238,907	-				-2.0
3,238,907	-				-2.0
3,238,907	-				+0.4
3,238,907	-				-0.3
3,238,907	-				+2.3
3,238,907	-				+0.9
3,238,907	-				+0.3
3,238,907	-				+1.1
3,238,907	-				+0.3
3,238,907	-				+0.9
3,238,907	-				+1.3
3,238,908	+				+0.9
3,238,908	+				+0.3
3,238,908	+				+1.0
3,238,908	+				-0.5
3,238,908	+				-0.0
3,238,908	+				+1.0
3,238,908	+				+0.2
3,238,908	+				+0.8
3,238,908	+				-1.3
3,238,909	-				+0.5
3,238,909	-				-0.6
3,238,909	-				-2.0
3,238,909	-				+2.5
3,238,909	-				-1.0
3,238,909	-				+1.0
3,238,909	-				+0.5
3,238,909	-				+0.0
3,238,909	-				+0.6
3,238,909	-				-0.1
3,238,909	-				-0.4
3,238,914	+				-1.3
3,238,914	+				+0.5
3,238,914	+				+0.3
3,238,914	+				-1.6
3,238,914	+				+1.3
3,238,914	+				-1.7
3,238,915	-				+0.3
3,238,915	-				+0.3
3,238,915	-				-0.7
3,238,918	+				-1.1
3,238,918	+				-0.0
3,238,918	+				+0.3
3,238,918	+				+0.9
3,238,918	+				+1.0
3,238,918	+				+0.0
3,238,919	-				-0.3
3,238,919	-				+0.1
3,238,919	-				+0.5
3,238,926	+				-0.1
3,238,926	+				-0.3
3,238,927	-				+0.0
3,238,927	-				-1.1
3,238,927	-				-2.0
3,238,938	+				+0.9
3,238,950	+				+1.3
3,238,950	+				+0.3
3,238,950	+				+0.2
3,238,950	+				-0.8
3,238,950	+				-0.0
3,238,950	+				-1.7
3,238,950	+				-0.2
3,238,950	+				+0.4
3,238,951	-				-0.5
3,238,951	-				-2.9
3,238,951	-				+1.3
3,238,951	-				-0.7
3,238,951	-				-0.7
3,238,951	-				-0.7
3,238,952	+				-2.7
3,238,952	+				-0.1
3,238,952	+				+0.6
3,238,952	+				+2.9
3,238,952	+				-0.4
3,238,952	+				+0.9
3,238,952	+				+0.1
3,238,952	+				-1.4
3,238,952	+				-0.4
3,238,952	+				-1.1
3,238,952	+				+0.0
3,238,953	-				+0.6
3,238,953	-				-0.7
3,238,953	-				-1.0
3,238,953	-				-0.8
3,238,953	-				-0.4
3,238,953	-				-1.0
3,238,953	-				-1.3
3,238,954	+				+0.1
3,238,954	+				+0.9
3,238,954	+				-0.8
3,238,954	+				+0.5
3,238,954	+				+0.7
3,238,954	+				+1.1
3,238,954	+				-0.5
3,238,954	+				-1.3
3,238,955	-				+0.9
3,238,955	-				-0.6
3,238,955	-				-0.8
3,238,955	-				+2.8
3,238,955	-				+1.3
3,238,964	-				+0.6
3,238,994	-				+1.5
3,238,994	-				-0.5
3,239,018	-				+0.5
3,239,052	+				+1.3
3,239,172	+				+0.2
3,239,173	-				-1.3
3,239,173	-				+0.6
3,239,173	-				-0.7
3,239,177	+				+0.6
3,239,177	+				+0.8
3,239,178	-				-0.1
3,239,318	+				-1.9
3,239,319	-				-1.0
3,239,319	-				+0.3
3,239,319	-				-0.5
3,239,319	-				-0.5
3,239,522	+		DZA65_RS14855	0.27	+0.5
3,239,522	+		DZA65_RS14855	0.27	+1.0
3,239,523	-		DZA65_RS14855	0.27	+0.9
3,239,523	-		DZA65_RS14855	0.27	-0.4
3,239,873	+		DZA65_RS14855	0.61	-0.8
3,239,874	-		DZA65_RS14855	0.61	+1.4
3,239,874	-		DZA65_RS14855	0.61	-0.3