Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14770

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,215,731	+		DZA65_RS14765	0.61	+2.7
3,215,731	+		DZA65_RS14765	0.61	+0.8
3,215,731	+		DZA65_RS14765	0.61	-1.9
3,215,731	+		DZA65_RS14765	0.61	-1.0
3,215,731	+		DZA65_RS14765	0.61	+0.9
3,215,731	+		DZA65_RS14765	0.61	+0.4
3,215,731	+		DZA65_RS14765	0.61	+1.3
3,215,732	-		DZA65_RS14765	0.61	-1.7
3,215,732	-		DZA65_RS14765	0.61	+1.3
3,215,732	-		DZA65_RS14765	0.61	+0.4
3,215,732	-		DZA65_RS14765	0.61	-1.7
3,215,732	-		DZA65_RS14765	0.61	-1.7
3,215,732	-		DZA65_RS14765	0.61	-0.5
3,215,732	-		DZA65_RS14765	0.61	+0.0
3,215,732	-		DZA65_RS14765	0.61	-1.9
3,215,756	+		DZA65_RS14765	0.62	-0.7
3,215,756	+				-1.3
3,215,896	+		DZA65_RS14765	0.73	-0.7
3,215,979	-		DZA65_RS14765	0.80	-1.3
3,216,001	+		DZA65_RS14765	0.81	+0.3
3,216,001	+		DZA65_RS14765	0.81	-1.5
3,216,022	-				-0.3
3,216,022	-		DZA65_RS14765	0.83	+0.6
3,216,317	+				+1.5
3,216,317	+				-1.5
3,216,318	-				+0.2
3,216,341	+				+0.1
3,216,341	+				+0.5
3,216,448	+				+2.4
3,216,495	-				-1.3
3,216,522	-				+0.3
3,216,628	+				-1.2
3,216,629	-				+0.0
3,216,651	+				+0.3
3,216,651	+				+0.4
3,216,651	+				+0.6
3,216,652	-				-0.5
3,216,652	-				+0.5
3,216,652	-				-1.5
3,216,652	-				-0.7
3,216,672	+				-0.6
3,216,672	+				+1.3
3,216,672	+				+0.8
3,216,672	+				-1.3
3,216,672	+				-0.1
3,216,672	+				-0.8
3,216,672	+				-0.4
3,216,673	-				-0.1
3,216,673	-				+0.3
3,216,673	-				+0.1
3,216,673	-				-0.7
3,216,674	+				-0.5
3,216,674	+				-1.3
3,216,674	+				+0.1
3,216,674	+				-1.5
3,216,675	-				-0.5
3,216,675	-				+0.2
3,216,719	+				+0.5
3,216,809	+				-0.4
3,216,810	-				-0.3
3,216,810	-				-0.5
3,216,810	-				-0.4
3,216,810	-				-0.3
3,216,810	-				-1.0
3,216,810	-				+0.3
3,216,810	-				+2.1
3,216,810	-				-0.1
3,216,810	-				+0.3
3,216,812	-				-1.0
3,217,060	+		DZA65_RS14770	0.27	-0.4
3,217,060	+		DZA65_RS14770	0.27	-0.7
3,217,060	+		DZA65_RS14770	0.27	-0.6
3,217,060	+		DZA65_RS14770	0.27	+0.3
3,217,060	+		DZA65_RS14770	0.27	-0.1
3,217,061	-		DZA65_RS14770	0.27	-1.5
3,217,061	-		DZA65_RS14770	0.27	-0.9
3,217,188	+		DZA65_RS14770	0.37	+0.1
3,217,275	-		DZA65_RS14770	0.44	-0.9
3,217,496	+		DZA65_RS14770	0.61	+1.0
3,217,496	+		DZA65_RS14770	0.61	-0.0
3,217,497	-		DZA65_RS14770	0.61	-0.5
3,217,497	-		DZA65_RS14770	0.61	-1.3
3,217,497	-		DZA65_RS14770	0.61	+1.2
3,217,586	+		DZA65_RS14770	0.68	-0.8
3,217,596	-		DZA65_RS14770	0.69	-0.6
3,217,675	+		DZA65_RS14770	0.75	-0.7
3,217,675	+		DZA65_RS14770	0.75	+0.0
3,217,676	-		DZA65_RS14770	0.75	-0.9
3,217,676	-		DZA65_RS14770	0.75	-0.3
3,217,676	-		DZA65_RS14770	0.75	+0.3
3,217,874	+				-0.7
3,217,874	+				-0.6
3,217,874	+				-0.5
3,217,874	+				+0.9
3,217,874	+				+0.7
3,217,874	+				+0.5
3,217,874	+				+0.3
3,217,875	-				-1.5
3,217,875	-				-0.5
3,217,875	-				+0.5
3,217,875	-				+0.3
3,217,875	-				+0.3
3,217,875	-				+0.8
3,217,875	-				+0.1
3,217,875	-				+0.3
3,217,938	+				-1.0
3,217,939	-				+0.4
3,217,939	-				-1.1
3,217,993	-				+0.6
3,218,086	+				-3.2
3,218,086	+				-0.4
3,218,086	+				-1.7
3,218,086	+				+2.8
3,218,086	+				+0.6
3,218,086	+				+0.2
3,218,098	+				-1.3
3,218,104	+				+0.0
3,218,104	+				-0.5
3,218,105	-				-2.0
3,218,105	-				-1.5
3,218,105	-				-1.0
3,218,115	+				+0.1
3,218,116	-				+1.5
3,218,116	-				+1.7
3,218,125	+				+0.7
3,218,126	-				-0.1
3,218,136	+				-0.3
3,218,174	+				-0.8
3,218,174	+				+0.5
3,218,174	+				-0.6
3,218,174	+				+0.5
3,218,175	-				-0.7
3,218,175	-				-1.5
3,218,175	-				+0.3
3,218,175	-				-0.5
3,218,176	+				-0.7
3,218,176	+				-0.4
3,218,177	-				-0.1
3,218,177	-				-0.3
3,218,177	-				-1.8
3,218,177	-				-0.5
3,218,177	-				+0.5
3,218,177	-				-2.5
3,218,177	-				-0.3
3,218,180	-				+0.1
3,218,186	+				+2.2
3,218,186	+				+1.6
3,218,186	+				-0.3
3,218,186	+				+0.4
3,218,187	-				-1.0
3,218,187	-				+0.3
3,218,192	+				+1.0
3,218,192	+				-0.1
3,218,193	-				-0.3
3,218,195	+				+0.3
3,218,195	+				+0.1
3,218,195	+				+0.6
3,218,196	-				-0.5
3,218,203	+				+0.6
3,218,204	-				+0.4
3,218,204	-				-0.1
3,218,230	+				-0.1
3,218,230	+				+0.3
3,218,230	+				-2.0
3,218,230	+				+0.9
3,218,230	+				+0.1
3,218,230	+				+0.3
3,218,230	+				-0.6
3,218,230	+				+0.6
3,218,230	+				-1.5
3,218,231	-				-1.1
3,218,231	-				-0.7
3,218,231	-				+0.3
3,218,231	-				-2.2
3,218,231	-				-0.7
3,218,231	-				-0.7
3,218,233	+				+0.5
3,218,234	-				-0.9
3,218,234	-				+0.3
3,218,237	-				-0.1
3,218,237	-				-0.7
3,218,237	-				+0.1
3,218,237	-				-1.5
3,218,237	-				-0.4
3,218,238	+				-2.7
3,218,238	+				-0.7
3,218,238	+				+0.1
3,218,238	+				+1.3
3,218,239	-				-0.5
3,218,239	-				-0.7
3,218,239	-				-1.4
3,218,239	-				+2.6
3,218,239	-				-1.7
3,218,239	-				-0.0
3,218,239	-				-0.7
3,218,239	-				+1.4
3,218,239	-				+2.8
3,218,243	+				-1.6
3,218,243	+				-0.3
3,218,243	+				-0.9
3,218,243	+				-1.3
3,218,243	+				+0.3
3,218,243	+				-0.5
3,218,243	+				+0.1
3,218,243	+				-1.6
3,218,243	+				+1.7
3,218,243	+				-0.7
3,218,243	+				-0.6
3,218,244	-				+0.7
3,218,244	-				-0.9
3,218,244	-				-0.8
3,218,244	-				+1.6
3,218,244	-				+1.6
3,218,252	+				-0.0
3,218,252	+				+1.7
3,218,252	+				+1.4
3,218,253	-				-1.6
3,218,253	-				-1.6
3,218,253	-				-1.6
3,218,253	-				+0.3
3,218,253	-				-0.0
3,218,253	-				+0.3
3,218,256	+				+1.0
3,218,256	+				+0.3
3,218,256	+				-0.6
3,218,257	-				-2.9
3,218,257	-				-0.1
3,218,363	-				-0.6
3,218,402	+				-2.0
3,218,402	+				+1.9
3,218,402	+				-1.2
3,218,402	+				-0.2
3,218,403	-				+0.4
3,218,403	-				-0.5
3,218,403	-				+0.3
3,218,403	-				+1.9
3,218,403	-				+0.5
3,218,403	-				-0.2
3,218,403	-				+0.9
3,218,403	-				-1.0
3,218,403	-				+0.3
3,218,403	-				-1.3
3,218,403	-				+0.9
3,218,403	-				-2.0
3,218,404	+				-0.2
3,218,404	+				+1.1
3,218,404	+				+1.0
3,218,404	+				+0.1
3,218,404	+				-0.9
3,218,405	-				-0.3
3,218,405	-				-0.9
3,218,405	-				+0.7
3,218,405	-				-0.9
3,218,405	-				+0.8
3,218,405	-				-1.9
3,218,405	-				+0.3
3,218,487	+		DZA65_RS14775	0.25	-0.7
3,218,487	+		DZA65_RS14775	0.25	+0.8
3,218,487	+		DZA65_RS14775	0.25	-0.1
3,218,487	+		DZA65_RS14775	0.25	+0.7
3,218,487	+		DZA65_RS14775	0.25	-0.1
3,218,487	+		DZA65_RS14775	0.25	+0.1
3,218,487	+		DZA65_RS14775	0.25	-0.9
3,218,488	-		DZA65_RS14775	0.25	+0.6
3,218,488	-		DZA65_RS14775	0.25	+1.3
3,218,488	-		DZA65_RS14775	0.25	-0.5
3,218,488	-		DZA65_RS14775	0.25	+1.4
3,218,492	-		DZA65_RS14775	0.26	-0.9
3,218,529	+		DZA65_RS14775	0.35	-0.8
3,218,530	-		DZA65_RS14775	0.35	+0.3
3,218,646	+		DZA65_RS14775	0.61	+0.0
3,218,658	+		DZA65_RS14775	0.64	+1.8
3,218,658	+		DZA65_RS14775	0.64	-1.2
3,218,658	+		DZA65_RS14775	0.64	-1.8
3,218,658	+		DZA65_RS14775	0.64	+0.4
3,218,658	+		DZA65_RS14775	0.64	-1.1
3,218,658	+		DZA65_RS14775	0.64	-1.7
3,218,659	-		DZA65_RS14775	0.64	-2.0
3,218,659	-		DZA65_RS14775	0.64	+2.3
3,218,659	-		DZA65_RS14775	0.64	+1.1
3,218,659	-		DZA65_RS14775	0.64	+0.1
3,218,659	-		DZA65_RS14775	0.64	+0.7
3,218,659	-		DZA65_RS14775	0.64	-0.4
3,218,659	-		DZA65_RS14775	0.64	+0.5
3,218,659	-		DZA65_RS14775	0.64	-0.2
3,218,659	-		DZA65_RS14775	0.64	+0.0
3,218,719	+		DZA65_RS14775	0.78	+0.7
3,218,893	+				+0.7
3,218,893	+				-2.5
3,218,894	-				-0.7
3,218,894	-				-1.0
3,218,894	-				+0.3