Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14740

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,204,533	+				-1.5
3,204,552	+				+1.5
3,204,552	+				-0.5
3,204,552	+				+0.1
3,204,553	-				-1.7
3,204,553	-				+1.4
3,204,563	+				-2.0
3,204,598	+				+0.3
3,204,631	+				-0.8
3,204,631	+				+0.1
3,204,657	+				-0.5
3,204,680	+				-0.7
3,204,682	+				-1.3
3,204,696	+				-1.0
3,204,696	+				-2.5
3,204,696	+				+1.2
3,204,699	-				+0.0
3,204,699	-				-0.3
3,204,745	+				-0.4
3,204,746	-				+0.3
3,204,803	+				+0.8
3,204,803	+				+0.3
3,204,803	+				+0.1
3,204,803	+				-0.9
3,204,804	-				-0.4
3,204,804	-				-0.6
3,204,804	-				-0.3
3,204,804	-				+0.3
3,204,804	-				-0.1
3,204,808	+				-1.0
3,204,809	-				+1.1
3,204,809	-				-0.7
3,204,809	-				-2.0
3,204,809	-				+0.8
3,204,809	-				+0.3
3,204,903	-				-0.6
3,204,913	+				-0.5
3,204,918	-				-1.9
3,205,006	+		DZA65_RS14735	0.21	-0.8
3,205,032	+		DZA65_RS14735	0.25	-1.1
3,205,126	-		DZA65_RS14735	0.42	+0.6
3,205,131	+		DZA65_RS14735	0.43	-2.0
3,205,131	+		DZA65_RS14735	0.43	-0.8
3,205,131	+		DZA65_RS14735	0.43	-1.7
3,205,132	-		DZA65_RS14735	0.44	+0.7
3,205,132	-		DZA65_RS14735	0.44	-2.3
3,205,260	+		DZA65_RS14735	0.67	-1.2
3,205,284	+		DZA65_RS14735	0.71	-0.9
3,205,284	+		DZA65_RS14735	0.71	+0.4
3,205,285	-		DZA65_RS14735	0.72	+0.3
3,205,437	+				-1.9
3,205,506	+				+0.1
3,205,506	+				+1.3
3,205,506	+				-0.1
3,205,506	+				-0.7
3,205,507	-				+0.2
3,205,507	-				+0.6
3,205,759	+		DZA65_RS14740	0.33	+0.3
3,205,759	+		DZA65_RS14740	0.33	-0.9
3,205,759	+		DZA65_RS14740	0.33	-1.7
3,205,759	+		DZA65_RS14740	0.33	-1.9
3,205,759	+		DZA65_RS14740	0.33	+0.2
3,205,759	+		DZA65_RS14740	0.33	+0.4
3,205,759	+		DZA65_RS14740	0.33	+0.1
3,205,760	-		DZA65_RS14740	0.33	-0.7
3,205,760	-		DZA65_RS14740	0.33	-1.2
3,205,760	-		DZA65_RS14740	0.33	+1.3
3,205,760	-		DZA65_RS14740	0.33	-0.1
3,205,760	-		DZA65_RS14740	0.33	-0.6
3,205,760	-		DZA65_RS14740	0.33	-0.4
3,205,760	-		DZA65_RS14740	0.33	+1.3
3,205,760	-		DZA65_RS14740	0.33	-0.3
3,205,839	-		DZA65_RS14740	0.42	-2.0
3,205,839	-		DZA65_RS14740	0.42	-0.7
3,205,953	+		DZA65_RS14740	0.56	-0.1
3,205,953	+		DZA65_RS14740	0.56	+0.3
3,205,953	+		DZA65_RS14740	0.56	-0.3
3,205,954	-		DZA65_RS14740	0.56	-0.3
3,205,954	-		DZA65_RS14740	0.56	-0.7
3,205,954	-		DZA65_RS14740	0.56	+0.5
3,205,957	+		DZA65_RS14740	0.56	+0.3
3,205,957	+		DZA65_RS14740	0.56	-1.5
3,205,957	+				+2.5
3,205,958	-		DZA65_RS14740	0.57	+0.7
3,206,006	+		DZA65_RS14740	0.62	-0.0
3,206,006	+		DZA65_RS14740	0.62	+1.6
3,206,049	+		DZA65_RS14740	0.68	-0.7
3,206,049	+		DZA65_RS14740	0.68	-0.5
3,206,049	+		DZA65_RS14740	0.68	-2.5
3,206,049	+		DZA65_RS14740	0.68	+0.7
3,206,049	+		DZA65_RS14740	0.68	+1.3
3,206,049	+		DZA65_RS14740	0.68	-0.1
3,206,050	-		DZA65_RS14740	0.68	+0.3
3,206,050	-		DZA65_RS14740	0.68	-0.2
3,206,050	-		DZA65_RS14740	0.68	-0.1
3,206,050	-		DZA65_RS14740	0.68	-3.3
3,206,050	-		DZA65_RS14740	0.68	-0.6
3,206,108	+		DZA65_RS14740	0.75	-1.0
3,206,109	-		DZA65_RS14740	0.75	-0.1
3,206,109	-		DZA65_RS14740	0.75	-0.5
3,206,128	-		DZA65_RS14740	0.77	+2.5
3,206,128	-		DZA65_RS14740	0.77	-0.0
3,206,128	-		DZA65_RS14740	0.77	+0.3
3,206,128	-		DZA65_RS14740	0.77	-0.3
3,206,138	+		DZA65_RS14740	0.78	-0.5
3,206,138	+		DZA65_RS14740	0.78	-1.5
3,206,138	+		DZA65_RS14740	0.78	-0.0
3,206,138	+		DZA65_RS14740	0.78	-1.2
3,206,139	-		DZA65_RS14740	0.78	-1.1
3,206,139	-		DZA65_RS14740	0.78	+0.3
3,206,141	+		DZA65_RS14740	0.79	-0.7
3,206,141	+		DZA65_RS14740	0.79	-3.4
3,206,142	-		DZA65_RS14740	0.79	-1.3
3,206,309	+				-0.4
3,206,309	+				-1.4
3,206,309	+				+0.7
3,206,310	-				+0.3
3,206,310	-				-0.3
3,206,310	-				-0.2
3,206,310	-				-0.6
3,206,310	-				+0.9
3,206,310	-				-1.3
3,206,380	+				+0.3
3,206,380	+				+1.7
3,206,380	+				-0.5
3,206,380	+				-0.7
3,206,380	+				+0.3
3,206,380	+				-0.0
3,206,380	+				+0.0
3,206,380	+				-1.1
3,206,380	+				+0.3
3,206,380	+				+1.2
3,206,380	+				-0.2
3,206,380	+				+1.6
3,206,380	+				-0.1
3,206,380	+				-0.1
3,206,381	-				-2.0
3,206,381	-				+0.3
3,206,381	-				-0.4
3,206,381	-				+0.5
3,206,381	-				-1.7
3,206,381	-				+0.6
3,206,381	-				+0.9
3,206,451	+				+0.3
3,206,665	+		DZA65_RS14745	0.12	-0.6
3,206,665	+		DZA65_RS14745	0.12	-0.1
3,206,665	+		DZA65_RS14745	0.12	-0.7
3,206,665	+		DZA65_RS14745	0.12	-0.0
3,206,665	+		DZA65_RS14745	0.12	-2.0
3,206,665	+		DZA65_RS14745	0.12	+0.6
3,206,665	+		DZA65_RS14745	0.12	-1.0
3,206,665	+		DZA65_RS14745	0.12	+0.6
3,206,665	+		DZA65_RS14745	0.12	-1.0
3,206,665	+		DZA65_RS14745	0.12	-1.3
3,206,666	-		DZA65_RS14745	0.12	-1.2
3,206,666	-		DZA65_RS14745	0.12	+0.4
3,206,666	-		DZA65_RS14745	0.12	-0.5
3,206,666	-		DZA65_RS14745	0.12	-1.7
3,206,666	-		DZA65_RS14745	0.12	+0.4
3,206,666	-		DZA65_RS14745	0.12	-1.9
3,206,666	-		DZA65_RS14745	0.12	+0.5
3,206,666	-		DZA65_RS14745	0.12	-0.7
3,206,666	-		DZA65_RS14745	0.12	+1.7
3,206,666	-		DZA65_RS14745	0.12	+1.4
3,206,666	-		DZA65_RS14745	0.12	+0.5
3,206,666	-		DZA65_RS14745	0.12	-0.7
3,206,666	-		DZA65_RS14745	0.12	+1.9
3,206,666	-		DZA65_RS14745	0.12	-0.7
3,206,666	-		DZA65_RS14745	0.12	-0.1
3,206,666	-		DZA65_RS14745	0.12	+0.3
3,206,666	-		DZA65_RS14745	0.12	-2.3
3,206,666	-		DZA65_RS14745	0.12	-0.6
3,206,666	-		DZA65_RS14745	0.12	+2.2
3,206,666	-		DZA65_RS14745	0.12	-1.3
3,206,666	-		DZA65_RS14745	0.12	-0.9
3,206,666	-		DZA65_RS14745	0.12	+1.5
3,206,666	-		DZA65_RS14745	0.12	-2.3
3,206,666	-		DZA65_RS14745	0.12	+0.7
3,206,666	-		DZA65_RS14745	0.12	+1.9
3,206,666	-		DZA65_RS14745	0.12	-1.0
3,206,666	-		DZA65_RS14745	0.12	+0.5
3,206,741	-		DZA65_RS14745	0.15	+0.1
3,206,741	-		DZA65_RS14745	0.15	-2.3
3,206,818	+		DZA65_RS14745	0.18	-1.3
3,206,854	+		DZA65_RS14745	0.19	-0.0
3,206,927	+		DZA65_RS14745	0.22	-1.0
3,207,176	-		DZA65_RS14745	0.31	-1.2