Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14370

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,135,149	+				-1.9
3,135,201	+				-0.6
3,135,202	-				+0.3
3,135,256	+				+0.1
3,135,265	-				+0.1
3,135,324	+				+0.5
3,135,330	-				+1.0
3,135,342	-				-0.2
3,135,353	+				-2.0
3,135,356	-				-1.7
3,135,358	-				+1.3
3,135,359	+				+0.7
3,135,420	-				-1.7
3,135,497	-				-0.7
3,135,540	+				-1.5
3,135,552	+				-0.5
3,135,570	+				+0.0
3,135,571	-				+1.0
3,135,622	+				-0.9
3,135,629	+				+0.5
3,135,673	-				-0.3
3,135,684	+				+0.5
3,135,684	+				+1.5
3,135,684	+				-1.0
3,135,685	-				+0.7
3,135,685	-				-0.8
3,135,688	+				-0.9
3,135,688	+				+1.1
3,135,688	+				+0.0
3,135,688	+				-2.0
3,135,688	+				+0.2
3,135,689	-				-2.0
3,135,689	-				+0.3
3,135,704	+				+1.0
3,135,705	-				-0.9
3,135,705	-				+1.1
3,135,706	+				-0.3
3,135,778	+				-1.0
3,135,779	-				-1.5
3,135,779	-				-2.3
3,135,857	+				-0.3
3,135,894	+				+0.3
3,135,894	+				+0.6
3,135,996	+				+0.9
3,136,019	+				-2.7
3,136,020	-				-0.1
3,136,032	-				+0.5
3,136,047	-				-1.0
3,136,051	-				-0.0
3,136,057	+				-0.5
3,136,058	-		DZA65_RS14370	0.10	-1.1
3,136,087	+		DZA65_RS14370	0.23	-0.1
3,136,087	+		DZA65_RS14370	0.23	+1.5
3,136,088	-		DZA65_RS14370	0.24	-0.4
3,136,107	+		DZA65_RS14370	0.32	-0.7
3,136,107	+		DZA65_RS14370	0.32	-1.0
3,136,107	+		DZA65_RS14370	0.32	+0.4
3,136,107	+		DZA65_RS14370	0.32	-0.4
3,136,107	+		DZA65_RS14370	0.32	-0.0
3,136,107	+		DZA65_RS14370	0.32	-0.1
3,136,108	-		DZA65_RS14370	0.33	-0.5
3,136,108	-		DZA65_RS14370	0.33	+0.5
3,136,108	-		DZA65_RS14370	0.33	+0.2
3,136,108	-		DZA65_RS14370	0.33	-1.0
3,136,108	-		DZA65_RS14370	0.33	+1.0
3,136,108	-		DZA65_RS14370	0.33	+0.1
3,136,108	-		DZA65_RS14370	0.33	-0.1
3,136,108	-		DZA65_RS14370	0.33	-0.2
3,136,108	-		DZA65_RS14370	0.33	+0.7
3,136,126	+		DZA65_RS14370	0.41	-0.3
3,136,165	+		DZA65_RS14370	0.59	-1.7
3,136,165	+		DZA65_RS14370	0.59	-0.0
3,136,166	-		DZA65_RS14370	0.59	-1.0
3,136,201	+		DZA65_RS14370	0.75	-1.2
3,136,201	+		DZA65_RS14370	0.75	-1.4
3,136,411	+		DZA65_RS14375	0.11	+2.0
3,136,411	+		DZA65_RS14375	0.11	-2.7
3,136,411	+		DZA65_RS14375	0.11	-1.0
3,136,411	+		DZA65_RS14375	0.11	-0.9
3,136,412	-		DZA65_RS14375	0.12	+1.2
3,136,420	+		DZA65_RS14375	0.13	-0.6
3,136,420	+		DZA65_RS14375	0.13	+0.5
3,136,420	+		DZA65_RS14375	0.13	-1.2
3,136,421	-		DZA65_RS14375	0.13	-0.6
3,136,421	-		DZA65_RS14375	0.13	-0.7
3,136,421	-		DZA65_RS14375	0.13	+1.0
3,136,433	+		DZA65_RS14375	0.15	-1.7
3,136,433	+		DZA65_RS14375	0.15	-0.5
3,136,433	+		DZA65_RS14375	0.15	+0.3
3,136,434	-		DZA65_RS14375	0.15	-0.3
3,136,440	+		DZA65_RS14375	0.16	-0.3
3,136,440	+		DZA65_RS14375	0.16	-0.8
3,136,599	-		DZA65_RS14375	0.40	-0.3
3,136,599	-		DZA65_RS14375	0.40	-1.0
3,136,599	-		DZA65_RS14375	0.40	+1.1
3,136,639	+		DZA65_RS14375	0.46	+1.0
3,136,652	+		DZA65_RS14375	0.48	+1.0
3,136,676	-		DZA65_RS14375	0.51	-0.3
3,136,728	+		DZA65_RS14375	0.59	+0.8
3,136,728	+		DZA65_RS14375	0.59	+0.3
3,136,729	-		DZA65_RS14375	0.59	+0.3
3,136,731	+		DZA65_RS14375	0.59	-0.2
3,136,731	+		DZA65_RS14375	0.59	-0.1
3,136,732	-		DZA65_RS14375	0.60	+0.4
3,136,788	+		DZA65_RS14375	0.68	-1.0
3,136,788	+		DZA65_RS14375	0.68	+0.3
3,136,788	+		DZA65_RS14375	0.68	-0.6
3,136,788	+		DZA65_RS14375	0.68	-2.5
3,136,788	+		DZA65_RS14375	0.68	+0.4
3,136,788	+		DZA65_RS14375	0.68	+0.2
3,136,788	+		DZA65_RS14375	0.68	-1.3
3,136,788	+		DZA65_RS14375	0.68	-0.7
3,136,788	+		DZA65_RS14375	0.68	-0.5
3,136,789	-		DZA65_RS14375	0.68	+0.3
3,136,789	-		DZA65_RS14375	0.68	+0.5
3,136,789	-		DZA65_RS14375	0.68	-0.7
3,136,789	-		DZA65_RS14375	0.68	+0.2
3,136,789	-		DZA65_RS14375	0.68	-0.3
3,136,789	-		DZA65_RS14375	0.68	-0.0
3,136,789	-		DZA65_RS14375	0.68	+1.0
3,136,790	+		DZA65_RS14375	0.68	-1.3
3,136,790	+		DZA65_RS14375	0.68	-0.3
3,136,791	-		DZA65_RS14375	0.68	-0.3
3,136,799	+				+0.9
3,136,799	+		DZA65_RS14375	0.70	-0.7
3,136,799	+		DZA65_RS14375	0.70	-2.3
3,136,799	+		DZA65_RS14375	0.70	-0.9
3,136,806	+		DZA65_RS14375	0.71	-0.4
3,136,842	-		DZA65_RS14375	0.76	-0.8
3,136,842	-		DZA65_RS14375	0.76	+0.5
3,136,844	+		DZA65_RS14375	0.76	-1.0
3,136,844	+		DZA65_RS14375	0.76	-0.0
3,136,845	-		DZA65_RS14375	0.77	+0.1
3,136,969	+				+0.0
3,136,969	+				+0.7
3,136,969	+				+1.3
3,136,969	+				+1.3
3,136,969	+				+0.3
3,136,970	-				+0.3
3,136,970	-				-1.0
3,136,970	-				-1.5
3,136,970	-				-0.5
3,136,970	-				-0.7
3,136,970	-				+0.9
3,136,981	+				-0.1
3,136,986	-				-0.5
3,136,986	-				-0.1
3,137,015	-				+1.1
3,137,015	-				-0.5
3,137,018	+				-0.4
3,137,019	-				+0.9
3,137,083	+		DZA65_RS14380	0.30	+0.9
3,137,084	-		DZA65_RS14380	0.31	+0.9
3,137,104	+		DZA65_RS14380	0.38	-1.1
3,137,104	+		DZA65_RS14380	0.38	-1.7
3,137,105	-		DZA65_RS14380	0.38	-0.9
3,137,107	+		DZA65_RS14380	0.39	+0.6
3,137,107	+		DZA65_RS14380	0.39	+0.6
3,137,108	-		DZA65_RS14380	0.39	+1.5
3,137,108	-		DZA65_RS14380	0.39	-1.5
3,137,108	-		DZA65_RS14380	0.39	-0.2
3,137,108	-		DZA65_RS14380	0.39	-0.1
3,137,108	-		DZA65_RS14380	0.39	+0.7
3,137,171	+		DZA65_RS14380	0.62	-0.0
3,137,172	-		DZA65_RS14380	0.62	-0.8
3,137,192	-		DZA65_RS14380	0.69	-0.5