Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14330

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,126,742	-		DZA65_RS14320	0.73	+1.1
3,126,764	+		DZA65_RS14320	0.74	-0.9
3,126,765	-		DZA65_RS14320	0.74	-1.0
3,126,765	-				-0.7
3,126,815	+		DZA65_RS14320	0.78	+0.1
3,126,865	+		DZA65_RS14320	0.82	-0.6
3,126,866	-		DZA65_RS14320	0.82	+0.7
3,126,934	+		DZA65_RS14320	0.88	-0.1
3,126,934	+		DZA65_RS14320	0.88	-0.0
3,126,934	+		DZA65_RS14320	0.88	+0.5
3,126,934	+		DZA65_RS14320	0.88	-0.9
3,126,934	+		DZA65_RS14320	0.88	-2.0
3,126,934	+		DZA65_RS14320	0.88	-1.0
3,126,934	+		DZA65_RS14320	0.88	+0.1
3,126,935	-		DZA65_RS14320	0.88	+0.3
3,126,935	-		DZA65_RS14320	0.88	-2.0
3,126,935	-		DZA65_RS14320	0.88	-1.6
3,126,938	-		DZA65_RS14320	0.88	-0.6
3,126,938	-		DZA65_RS14320	0.88	-1.0
3,126,938	-		DZA65_RS14320	0.88	-0.1
3,126,953	+		DZA65_RS14320	0.89	+0.0
3,126,953	+		DZA65_RS14320	0.89	+0.6
3,126,953	+		DZA65_RS14320	0.89	+1.5
3,126,953	+		DZA65_RS14320	0.89	-0.0
3,126,953	+		DZA65_RS14320	0.89	+0.1
3,126,953	+		DZA65_RS14320	0.89	-1.6
3,126,953	+		DZA65_RS14320	0.89	-0.5
3,126,953	+		DZA65_RS14320	0.89	+0.3
3,126,953	+		DZA65_RS14320	0.89	-1.7
3,126,953	+		DZA65_RS14320	0.89	-1.1
3,126,953	+		DZA65_RS14320	0.89	+1.3
3,126,953	+		DZA65_RS14320	0.89	-0.7
3,126,953	+		DZA65_RS14320	0.89	-0.7
3,126,954	-		DZA65_RS14320	0.89	-0.7
3,126,954	-		DZA65_RS14320	0.89	-0.3
3,126,954	-		DZA65_RS14320	0.89	-0.7
3,126,954	-		DZA65_RS14320	0.89	+0.6
3,126,954	-		DZA65_RS14320	0.89	+1.0
3,126,954	-		DZA65_RS14320	0.89	-0.7
3,126,954	-		DZA65_RS14320	0.89	+0.8
3,126,954	-		DZA65_RS14320	0.89	+0.1
3,126,954	-		DZA65_RS14320	0.89	+0.3
3,126,954	-		DZA65_RS14320	0.89	-0.9
3,126,954	-		DZA65_RS14320	0.89	+0.5
3,126,971	+				-0.5
3,126,971	+				+0.3
3,126,972	-				-0.3
3,127,021	+				-1.2
3,127,037	+				-1.7
3,127,037	+				-0.7
3,127,037	+				-0.2
3,127,038	-				-0.7
3,127,038	-				+1.3
3,127,049	+				-0.5
3,127,049	+				-0.9
3,127,055	+				-1.1
3,127,055	+				+2.5
3,127,055	+				+1.2
3,127,055	+				+2.2
3,127,056	-				-0.0
3,127,056	-				-0.5
3,127,069	+				+1.9
3,127,069	+				-1.5
3,127,069	+				+0.3
3,127,069	+				+1.0
3,127,070	-				-1.5
3,127,070	-				+0.9
3,127,070	-				+0.3
3,127,070	-				-0.7
3,127,070	-				-1.9
3,127,104	+				-0.0
3,127,120	+				-0.2
3,127,197	+				+0.5
3,127,226	+				-1.7
3,127,226	+				+0.3
3,127,226	+				+1.3
3,127,226	+				+0.3
3,127,226	+				-1.0
3,127,227	-				-1.0
3,127,248	+				-1.5
3,127,248	+				-1.3
3,127,254	+				+0.3
3,127,269	+		DZA65_RS14325	0.14	+0.4
3,127,270	-		DZA65_RS14325	0.14	-0.0
3,127,271	+		DZA65_RS14325	0.15	-0.7
3,127,271	+				+0.3
3,127,271	+		DZA65_RS14325	0.15	+1.6
3,127,272	-		DZA65_RS14325	0.15	-0.7
3,127,272	-		DZA65_RS14325	0.15	-0.9
3,127,272	-		DZA65_RS14325	0.15	+0.5
3,127,292	-		DZA65_RS14325	0.21	-2.7
3,127,319	+		DZA65_RS14325	0.30	+0.0
3,127,319	+		DZA65_RS14325	0.30	-0.9
3,127,319	+		DZA65_RS14325	0.30	-0.1
3,127,319	+		DZA65_RS14325	0.30	-1.0
3,127,319	+		DZA65_RS14325	0.30	-1.8
3,127,319	+		DZA65_RS14325	0.30	-3.3
3,127,320	-		DZA65_RS14325	0.30	-0.7
3,127,320	-		DZA65_RS14325	0.30	-0.4
3,127,320	-		DZA65_RS14325	0.30	-0.3
3,127,320	-		DZA65_RS14325	0.30	-0.5
3,127,325	+		DZA65_RS14325	0.32	-0.9
3,127,325	+		DZA65_RS14325	0.32	+0.8
3,127,325	+		DZA65_RS14325	0.32	+0.6
3,127,326	-		DZA65_RS14325	0.32	+0.5
3,127,326	-		DZA65_RS14325	0.32	+0.6
3,127,326	-		DZA65_RS14325	0.32	+1.7
3,127,468	+		DZA65_RS14325	0.77	-0.3
3,127,469	-		DZA65_RS14325	0.77	+0.9
3,127,495	+		DZA65_RS14325	0.86	-0.9
3,127,496	-		DZA65_RS14325	0.86	-1.3
3,127,519	-				-1.7
3,127,519	-				+0.7
3,127,519	-				+0.3
3,127,519	-				+0.5
3,127,539	+				-0.7
3,127,539	+				+0.5
3,127,539	+				+0.6
3,127,539	+				+0.3
3,127,540	-				+0.9
3,127,540	-				+0.1
3,127,540	-				-0.3
3,127,540	-				+0.9
3,127,540	-				-0.5
3,127,540	-				-0.1
3,127,565	+				+0.2
3,127,565	+				-0.1
3,127,565	+				-0.5
3,127,565	+				+1.3
3,127,565	+				-0.7
3,127,565	+				-0.2
3,127,565	+				+0.3
3,127,565	+				-1.3
3,127,565	+				+1.7
3,127,566	-				+0.9
3,127,566	-				-1.3
3,127,566	-				-0.3
3,127,566	-				+0.4
3,127,566	-				-0.2
3,127,566	-				+0.5
3,127,566	-				-0.7
3,127,566	-				-2.0
3,127,711	+				-0.1
3,127,712	-				-0.0
3,127,726	-				-0.3
3,127,779	+		DZA65_RS14330	0.18	+1.2
3,127,780	-		DZA65_RS14330	0.19	-0.6
3,127,784	+		DZA65_RS14330	0.20	+1.7
3,127,784	+		DZA65_RS14330	0.20	+3.4
3,127,785	-		DZA65_RS14330	0.20	+0.7
3,127,785	-		DZA65_RS14330	0.20	+0.3
3,127,785	-		DZA65_RS14330	0.20	+0.1
3,127,785	-		DZA65_RS14330	0.20	+0.7
3,127,819	-		DZA65_RS14330	0.32	-0.8
3,127,819	-		DZA65_RS14330	0.32	+0.4
3,127,824	+		DZA65_RS14330	0.33	-0.8
3,127,825	-		DZA65_RS14330	0.34	-0.7
3,127,825	-		DZA65_RS14330	0.34	+2.9
3,127,899	+		DZA65_RS14330	0.58	+0.7
3,127,968	-		DZA65_RS14330	0.81	-0.3
3,127,988	+		DZA65_RS14330	0.88	+0.3
3,128,027	-				-0.7
3,128,027	-				+0.3
3,128,030	-				-0.4
3,128,030	-				-1.7
3,128,038	+				+1.3
3,128,038	+				+1.1
3,128,038	+				-0.8
3,128,038	+				+0.5
3,128,038	+				+1.3
3,128,039	-				+2.1
3,128,039	-				-1.5
3,128,039	-				-0.9
3,128,039	-				-1.7
3,128,039	-				+0.6
3,128,039	-				-1.0
3,128,184	+				+0.3
3,128,184	+				-1.0
3,128,184	+				-1.0
3,128,184	+				+0.6
3,128,184	+				-1.0
3,128,185	-				+0.3
3,128,185	-				-0.1
3,128,267	+		DZA65_RS14335	0.30	-0.7
3,128,268	-		DZA65_RS14335	0.30	-0.3
3,128,268	-		DZA65_RS14335	0.30	+0.1
3,128,295	+		DZA65_RS14335	0.40	-1.3
3,128,295	+		DZA65_RS14335	0.40	+0.5
3,128,295	+		DZA65_RS14335	0.40	-0.4
3,128,296	-		DZA65_RS14335	0.41	+0.3
3,128,351	+		DZA65_RS14335	0.61	+2.1
3,128,352	-		DZA65_RS14335	0.61	-0.1
3,128,494	+				+0.1
3,128,495	-				-2.9
3,128,548	-				-0.7
3,128,551	+				+0.9
3,128,551	+				+1.1
3,128,568	+				+0.1
3,128,569	-				+1.3
3,128,569	-				-0.6
3,128,584	+				+0.1
3,128,585	-				+0.6
3,128,603	+				-0.7
3,128,603	+				-0.7
3,128,631	+				-0.9
3,128,632	-				-1.1
3,128,674	-				-0.4
3,128,677	+				+0.3
3,128,677	+				+0.4
3,128,677	+				+1.3
3,128,677	+				-0.1
3,128,678	-				+0.8
3,128,678	-				+0.9
3,128,678	-				-0.3
3,128,678	-				-0.9
3,128,678	-				-0.9
3,128,776	-				-0.5
3,128,803	-				+0.3
3,128,803	-				+2.4
3,128,803	-				-0.3
3,128,859	-				-2.3
3,128,893	-				-1.9
3,128,927	-				+1.6
3,128,943	+				+0.8
3,128,943	+				-0.9
3,128,962	-				+0.8
3,128,993	+		DZA65_RS14340	0.13	+1.2