Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,923,797	-		DZA65_RS13615	0.54	+0.3
2,923,825	+		DZA65_RS13615	0.56	-0.4
2,923,826	-		DZA65_RS13615	0.56	-0.0
2,923,852	+		DZA65_RS13615	0.57	-1.5
2,923,852	+		DZA65_RS13615	0.57	+1.1
2,923,852	+		DZA65_RS13615	0.57	-0.1
2,923,853	-		DZA65_RS13615	0.58	+0.6
2,923,853	-		DZA65_RS13615	0.58	+0.3
2,923,853	-		DZA65_RS13615	0.58	-0.5
2,923,853	-		DZA65_RS13615	0.58	-0.4
2,923,869	+		DZA65_RS13615	0.59	-0.5
2,923,869	+		DZA65_RS13615	0.59	-1.1
2,923,869	+		DZA65_RS13615	0.59	+1.2
2,923,869	+		DZA65_RS13615	0.59	-2.0
2,923,869	+		DZA65_RS13615	0.59	+0.6
2,923,869	+		DZA65_RS13615	0.59	-0.1
2,923,869	+		DZA65_RS13615	0.59	+0.9
2,923,870	-		DZA65_RS13615	0.59	-0.9
2,923,870	-		DZA65_RS13615	0.59	-0.7
2,923,870	-		DZA65_RS13615	0.59	+1.1
2,923,870	-		DZA65_RS13615	0.59	+0.8
2,923,870	-		DZA65_RS13615	0.59	+1.5
2,923,870	-				+0.3
2,923,870	-		DZA65_RS13615	0.59	-0.7
2,923,870	-		DZA65_RS13615	0.59	-0.6
2,923,873	+		DZA65_RS13615	0.59	-2.6
2,923,874	-		DZA65_RS13615	0.59	-0.7
2,924,055	+		DZA65_RS13615	0.72	-2.7
2,924,056	-		DZA65_RS13615	0.72	-0.5
2,924,073	+		DZA65_RS13615	0.73	-2.5
2,924,073	+		DZA65_RS13615	0.73	-1.0
2,924,073	+		DZA65_RS13615	0.73	-1.0
2,924,073	+		DZA65_RS13615	0.73	-1.3
2,924,073	+		DZA65_RS13615	0.73	-0.6
2,924,073	+		DZA65_RS13615	0.73	-0.1
2,924,073	+		DZA65_RS13615	0.73	-1.8
2,924,074	-		DZA65_RS13615	0.73	+1.3
2,924,074	-		DZA65_RS13615	0.73	-3.2
2,924,074	-		DZA65_RS13615	0.73	-0.3
2,924,074	-		DZA65_RS13615	0.73	-0.3
2,924,141	-		DZA65_RS13615	0.78	-0.0
2,924,141	-		DZA65_RS13615	0.78	+0.8
2,924,155	+		DZA65_RS13615	0.79	+0.3
2,924,155	+		DZA65_RS13615	0.79	+0.9
2,924,155	+		DZA65_RS13615	0.79	-1.0
2,924,155	+		DZA65_RS13615	0.79	-0.5
2,924,155	+		DZA65_RS13615	0.79	+0.0
2,924,155	+		DZA65_RS13615	0.79	-0.3
2,924,155	+		DZA65_RS13615	0.79	-2.7
2,924,155	+		DZA65_RS13615	0.79	-0.2
2,924,156	-		DZA65_RS13615	0.79	-0.0
2,924,156	-		DZA65_RS13615	0.79	-1.5
2,924,156	-		DZA65_RS13615	0.79	+0.3
2,924,156	-		DZA65_RS13615	0.79	-1.5
2,924,156	-		DZA65_RS13615	0.79	-0.2
2,924,156	-		DZA65_RS13615	0.79	-1.9
2,924,156	-				+1.6
2,924,156	-		DZA65_RS13615	0.79	-0.4
2,924,156	-		DZA65_RS13615	0.79	-0.3
2,924,156	-		DZA65_RS13615	0.79	-0.4
2,924,156	-		DZA65_RS13615	0.79	-0.0
2,924,156	-		DZA65_RS13615	0.79	-0.9
2,924,197	+		DZA65_RS13615	0.82	+0.8
2,924,198	-		DZA65_RS13615	0.82	-0.4
2,924,198	-		DZA65_RS13615	0.82	-1.4
2,924,198	-		DZA65_RS13615	0.82	-0.2
2,924,206	-		DZA65_RS13615	0.82	-0.7
2,924,243	-		DZA65_RS13615	0.85	-0.2
2,924,350	+				-0.3
2,924,350	+				-1.6
2,924,350	+				-0.2
2,924,422	+				-1.4
2,924,427	-				-0.8
2,924,461	+				+0.1
2,924,461	+				+0.3
2,924,461	+				-0.2
2,924,461	+				-0.8
2,924,461	+				-1.3
2,924,461	+				-1.7
2,924,461	+				-2.3
2,924,461	+				+0.8
2,924,462	-				-0.4
2,924,462	-				+0.5
2,924,462	-				-0.4
2,924,462	-				-0.7
2,924,462	-				+0.3
2,924,464	+				-1.7
2,924,464	+				+0.3
2,924,465	-				-0.9
2,924,465	-				-0.0
2,924,481	+				+0.1
2,924,484	+				-1.3
2,924,484	+				+0.3
2,924,484	+				-1.6
2,924,484	+				+0.1
2,924,484	+				+0.4
2,924,484	+				+0.3
2,924,484	+				+0.0
2,924,484	+				-0.3
2,924,484	+				-0.6
2,924,484	+				-0.0
2,924,484	+				-0.1
2,924,485	-				-0.7
2,924,485	-				+0.5
2,924,485	-				-0.4
2,924,485	-				-1.3
2,924,485	-				+0.4
2,924,485	-				+0.3
2,924,485	-				+0.7
2,924,485	-				-2.5
2,924,485	-				+0.8
2,924,486	+				-2.0
2,924,486	+				+0.9
2,924,486	+				-0.2
2,924,486	+				+0.3
2,924,486	+				-0.7
2,924,486	+				-2.2
2,924,486	+				+0.4
2,924,486	+				-2.5
2,924,487	-				+0.3
2,924,487	-				-0.5
2,924,487	-				+0.0
2,924,487	-				+1.6
2,924,487	-				+0.7
2,924,487	-				-0.3
2,924,487	-				-0.7
2,924,487	-				+0.2
2,924,487	-				-1.3
2,924,487	-				+0.3
2,924,495	+				-2.2
2,924,495	+				-0.7
2,924,495	+				-0.8
2,924,495	+				+1.3
2,924,496	-				-1.7
2,924,554	-				-2.0
2,924,573	+				-1.5
2,924,662	+				-0.3
2,924,674	+				-2.9
2,924,675	-				+0.6
2,924,766	+				+0.3
2,924,817	+				-0.3
2,924,818	-				-0.5
2,924,877	+		DZA65_RS13620	0.12	+1.0
2,924,887	+				-0.7
2,924,888	-		DZA65_RS13620	0.13	+0.2
2,924,909	-				+0.9
2,924,909	-		DZA65_RS13620	0.16	-2.9
2,924,909	-				+0.3
2,924,909	-		DZA65_RS13620	0.16	-1.0
2,925,056	+		DZA65_RS13620	0.35	+2.2
2,925,057	-		DZA65_RS13620	0.35	+1.9
2,925,057	-		DZA65_RS13620	0.35	+2.5
2,925,057	-		DZA65_RS13620	0.35	-0.3
2,925,057	-		DZA65_RS13620	0.35	-0.5
2,925,057	-		DZA65_RS13620	0.35	+0.3
2,925,057	-		DZA65_RS13620	0.35	-0.3
2,925,057	-		DZA65_RS13620	0.35	-1.7
2,925,057	-		DZA65_RS13620	0.35	+0.3
2,925,058	+		DZA65_RS13620	0.35	-0.7
2,925,058	+		DZA65_RS13620	0.35	+0.3
2,925,058	+		DZA65_RS13620	0.35	-1.2
2,925,058	+		DZA65_RS13620	0.35	-0.8
2,925,058	+		DZA65_RS13620	0.35	-1.4
2,925,058	+		DZA65_RS13620	0.35	-2.7
2,925,058	+		DZA65_RS13620	0.35	-2.0
2,925,058	+		DZA65_RS13620	0.35	-0.4
2,925,059	-		DZA65_RS13620	0.35	+2.1
2,925,059	-		DZA65_RS13620	0.35	+0.2
2,925,059	-		DZA65_RS13620	0.35	-0.5
2,925,059	-		DZA65_RS13620	0.35	-0.3
2,925,059	-		DZA65_RS13620	0.35	+0.5
2,925,158	+		DZA65_RS13620	0.47	+1.7
2,925,158	+		DZA65_RS13620	0.47	+1.2
2,925,158	+		DZA65_RS13620	0.47	-1.1
2,925,159	-		DZA65_RS13620	0.48	+0.7
2,925,159	-		DZA65_RS13620	0.48	+0.7
2,925,164	+		DZA65_RS13620	0.48	-0.1
2,925,164	+		DZA65_RS13620	0.48	-0.7
2,925,164	+		DZA65_RS13620	0.48	+0.5
2,925,164	+		DZA65_RS13620	0.48	-2.9
2,925,164	+		DZA65_RS13620	0.48	-0.1
2,925,165	-		DZA65_RS13620	0.48	+0.4
2,925,165	-		DZA65_RS13620	0.48	+0.5
2,925,165	-		DZA65_RS13620	0.48	+0.5
2,925,165	-		DZA65_RS13620	0.48	+0.5
2,925,165	-		DZA65_RS13620	0.48	-0.7
2,925,165	-		DZA65_RS13620	0.48	-1.9
2,925,165	-		DZA65_RS13620	0.48	+0.3
2,925,165	-		DZA65_RS13620	0.48	+0.5
2,925,204	-		DZA65_RS13620	0.53	-0.4
2,925,274	+		DZA65_RS13620	0.62	-0.2
2,925,274	+		DZA65_RS13620	0.62	-0.3
2,925,275	-		DZA65_RS13620	0.62	-0.9
2,925,277	+		DZA65_RS13620	0.62	+0.2
2,925,277	+		DZA65_RS13620	0.62	+0.3
2,925,277	+		DZA65_RS13620	0.62	+1.9
2,925,277	+		DZA65_RS13620	0.62	+0.1
2,925,277	+		DZA65_RS13620	0.62	+2.6
2,925,277	+		DZA65_RS13620	0.62	+0.6
2,925,277	+		DZA65_RS13620	0.62	+1.9
2,925,278	-		DZA65_RS13620	0.63	+0.6
2,925,278	-		DZA65_RS13620	0.63	+0.8
2,925,278	-		DZA65_RS13620	0.63	-0.1
2,925,278	-		DZA65_RS13620	0.63	+0.1
2,925,278	-		DZA65_RS13620	0.63	+0.6
2,925,280	+		DZA65_RS13620	0.63	-0.3
2,925,280	+		DZA65_RS13620	0.63	-1.5
2,925,280	+		DZA65_RS13620	0.63	-0.0
2,925,280	+		DZA65_RS13620	0.63	-1.9
2,925,280	+		DZA65_RS13620	0.63	+0.3
2,925,280	+		DZA65_RS13620	0.63	-0.5
2,925,280	+		DZA65_RS13620	0.63	-0.7
2,925,281	-				-0.3
2,925,332	+		DZA65_RS13620	0.69	+0.6
2,925,332	+		DZA65_RS13620	0.69	+0.9
2,925,378	+		DZA65_RS13620	0.75	+0.9
2,925,378	+		DZA65_RS13620	0.75	-0.3
2,925,378	+		DZA65_RS13620	0.75	-1.2
2,925,378	+		DZA65_RS13620	0.75	-0.1
2,925,378	+		DZA65_RS13620	0.75	-0.0
2,925,378	+		DZA65_RS13620	0.75	+1.5
2,925,379	-		DZA65_RS13620	0.75	+0.3
2,925,379	-		DZA65_RS13620	0.75	-0.8
2,925,379	-		DZA65_RS13620	0.75	-0.0
2,925,501	+				+0.8
2,925,501	+				-0.3
2,925,532	+				-1.3
2,925,532	+				-0.1
2,925,533	-				+0.0
2,925,567	+				+0.1
2,925,567	+				-1.2
2,925,567	+				-0.1
2,925,567	+				+0.1
2,925,567	+				-0.6
2,925,567	+				-0.3
2,925,567	+				+0.1
2,925,568	-				+0.7
2,925,568	-				-2.5
2,925,568	-				+1.6
2,925,568	-				-0.7
2,925,575	+				+0.1
2,925,575	+				+0.4
2,925,576	-				+0.9
2,925,576	-				+1.4
2,925,576	-				+0.6
2,925,576	-				+1.0
2,925,576	-				+2.0
2,925,576	-				-0.0