Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12310

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,628,994	+		DZA65_RS12300	0.71	-0.3
2,628,994	+		DZA65_RS12300	0.71	-0.2
2,628,994	+		DZA65_RS12300	0.71	+3.1
2,628,995	-		DZA65_RS12300	0.71	+0.8
2,629,040	+		DZA65_RS12300	0.78	-0.9
2,629,041	-		DZA65_RS12300	0.78	-1.1
2,629,088	+		DZA65_RS12300	0.85	-0.2
2,629,088	+		DZA65_RS12300	0.85	-3.0
2,629,089	-		DZA65_RS12300	0.85	-0.9
2,629,149	-				-1.9
2,629,149	-				-0.3
2,629,149	-				+1.4
2,629,169	+				+0.4
2,629,169	+				+1.3
2,629,170	-				-0.9
2,629,179	+				+1.0
2,629,180	-				+1.2
2,629,180	-				-2.4
2,629,180	-				+0.1
2,629,180	-				-2.1
2,629,201	+				-0.4
2,629,201	+				+1.9
2,629,201	+				+0.3
2,629,202	-				-0.6
2,629,202	-				-0.4
2,629,221	+				+0.6
2,629,365	-		DZA65_RS12305	0.25	+1.4
2,629,365	-		DZA65_RS12305	0.25	-0.9
2,629,368	-		DZA65_RS12305	0.26	+0.1
2,629,404	-		DZA65_RS12305	0.31	-1.2
2,629,423	+		DZA65_RS12305	0.34	+0.1
2,629,423	+		DZA65_RS12305	0.34	-2.2
2,629,452	-		DZA65_RS12305	0.38	-1.7
2,629,495	+		DZA65_RS12305	0.44	-1.5
2,629,495	+		DZA65_RS12305	0.44	+0.1
2,629,495	+		DZA65_RS12305	0.44	-0.2
2,629,508	-		DZA65_RS12305	0.46	+1.0
2,629,508	-		DZA65_RS12305	0.46	-0.6
2,629,508	-		DZA65_RS12305	0.46	-2.3
2,629,508	-		DZA65_RS12305	0.46	+2.4
2,629,581	+		DZA65_RS12305	0.57	-0.9
2,629,581	+		DZA65_RS12305	0.57	-2.1
2,629,581	+		DZA65_RS12305	0.57	-0.6
2,629,582	-		DZA65_RS12305	0.57	+1.0
2,629,588	+		DZA65_RS12305	0.58	-0.4
2,629,589	-		DZA65_RS12305	0.58	+0.1
2,629,635	+		DZA65_RS12305	0.65	-0.1
2,629,635	+		DZA65_RS12305	0.65	+0.3
2,629,635	+		DZA65_RS12305	0.65	+0.5
2,629,635	+		DZA65_RS12305	0.65	+0.6
2,629,635	+		DZA65_RS12305	0.65	-1.2
2,629,635	+		DZA65_RS12305	0.65	-0.6
2,629,635	+		DZA65_RS12305	0.65	-2.0
2,629,635	+		DZA65_RS12305	0.65	-0.7
2,629,635	+		DZA65_RS12305	0.65	+0.4
2,629,635	+		DZA65_RS12305	0.65	-0.9
2,629,635	+		DZA65_RS12305	0.65	+3.0
2,629,635	+		DZA65_RS12305	0.65	+0.1
2,629,635	+		DZA65_RS12305	0.65	-0.4
2,629,636	-		DZA65_RS12305	0.65	-0.1
2,629,636	-		DZA65_RS12305	0.65	+0.4
2,629,636	-		DZA65_RS12305	0.65	-1.7
2,629,636	-		DZA65_RS12305	0.65	-0.8
2,629,636	-		DZA65_RS12305	0.65	+1.5
2,629,636	-		DZA65_RS12305	0.65	+0.8
2,629,636	-		DZA65_RS12305	0.65	+0.0
2,629,636	-		DZA65_RS12305	0.65	-0.6
2,629,636	-		DZA65_RS12305	0.65	+0.9
2,629,636	-		DZA65_RS12305	0.65	-1.9
2,629,636	-		DZA65_RS12305	0.65	+0.1
2,629,636	-		DZA65_RS12305	0.65	+0.3
2,629,636	-		DZA65_RS12305	0.65	+0.6
2,629,636	-		DZA65_RS12305	0.65	+0.3
2,629,636	-		DZA65_RS12305	0.65	-2.4
2,629,720	+		DZA65_RS12305	0.78	-1.0
2,629,720	+		DZA65_RS12305	0.78	-0.4
2,629,720	+		DZA65_RS12305	0.78	-1.6
2,629,721	-		DZA65_RS12305	0.78	+0.7
2,629,721	-		DZA65_RS12305	0.78	-1.2
2,629,721	-		DZA65_RS12305	0.78	-2.3
2,629,721	-		DZA65_RS12305	0.78	+0.3
2,629,721	-		DZA65_RS12305	0.78	+0.3
2,629,721	-		DZA65_RS12305	0.78	+0.9
2,629,746	+		DZA65_RS12305	0.82	+0.1
2,629,746	+		DZA65_RS12305	0.82	+0.1
2,629,789	+		DZA65_RS12305	0.88	-0.2
2,629,789	+		DZA65_RS12305	0.88	-0.6
2,629,790	-		DZA65_RS12305	0.88	-1.7
2,629,790	-		DZA65_RS12305	0.88	+0.4
2,629,790	-		DZA65_RS12305	0.88	+0.6
2,629,790	-		DZA65_RS12305	0.88	-0.3
2,629,790	-		DZA65_RS12305	0.88	-0.6
2,629,790	-		DZA65_RS12305	0.88	+0.1
2,629,816	+				-0.1
2,629,816	+				-1.2
2,629,816	+				-0.2
2,629,817	-				-0.2
2,629,817	-				+0.4
2,629,895	-				-0.2
2,629,909	+				-0.8
2,629,909	+				-0.9
2,629,909	+				-0.4
2,629,909	+				+0.7
2,629,909	+				-0.1
2,629,909	+				-1.7
2,629,909	+				-0.2
2,629,909	+				-2.2
2,629,909	+				+0.3
2,629,909	+				+0.5
2,629,909	+				-0.9
2,629,909	+				-0.7
2,629,909	+				+0.0
2,629,909	+				-0.6
2,629,909	+				+0.4
2,629,909	+				+1.1
2,629,909	+				-0.4
2,629,909	+				+0.6
2,629,909	+				-0.9
2,629,910	-				-0.7
2,629,910	-				-1.4
2,629,910	-				-0.4
2,629,910	-				-1.7
2,629,910	-				+1.5
2,629,910	-				+0.6
2,629,910	-				-0.5
2,629,910	-				-2.0
2,629,910	-				+0.7
2,629,913	+				-0.5
2,629,913	+				+0.6
2,629,913	+				-1.2
2,629,914	-				+0.1
2,629,914	-				-1.2
2,629,914	-				-1.0
2,629,914	-				-0.3
2,629,914	-				-0.9
2,629,914	-				+0.6
2,629,914	-				-0.4
2,629,932	-				-2.2
2,629,939	+				-0.9
2,629,940	-				+1.7
2,629,984	+				-0.4
2,629,985	-				-0.9
2,629,985	-				+0.3
2,629,985	-				+0.9
2,629,985	-				-0.8
2,630,005	+		DZA65_RS12310	0.12	-0.9
2,630,005	+		DZA65_RS12310	0.12	-0.4
2,630,005	+		DZA65_RS12310	0.12	-1.9
2,630,005	+		DZA65_RS12310	0.12	-0.2
2,630,005	+		DZA65_RS12310	0.12	-1.0
2,630,005	+		DZA65_RS12310	0.12	-0.9
2,630,006	-		DZA65_RS12310	0.12	-2.0
2,630,006	-		DZA65_RS12310	0.12	-0.0
2,630,030	+		DZA65_RS12310	0.15	+1.1
2,630,062	+		DZA65_RS12310	0.19	-0.9
2,630,062	+		DZA65_RS12310	0.19	-0.2
2,630,062	+		DZA65_RS12310	0.19	+0.8
2,630,351	+		DZA65_RS12310	0.56	-0.6
2,630,352	-		DZA65_RS12310	0.56	-0.7
2,630,579	+		DZA65_RS12310	0.85	-0.7
2,630,580	-		DZA65_RS12310	0.85	-0.7
2,630,695	-				+0.0
2,630,695	-				+1.1
2,630,782	-				-2.0
2,630,782	-				-1.4
2,630,782	-				+0.6
2,630,841	+		DZA65_RS12315	0.14	+0.6
2,631,090	-		DZA65_RS12315	0.41	-3.0
2,631,126	+		DZA65_RS12315	0.45	-0.6
2,631,126	+		DZA65_RS12315	0.45	+0.1
2,631,127	-		DZA65_RS12315	0.45	-0.2
2,631,127	-		DZA65_RS12315	0.45	-0.3
2,631,127	-		DZA65_RS12315	0.45	+0.1
2,631,259	+		DZA65_RS12315	0.59	+0.6
2,631,259	+		DZA65_RS12315	0.59	-0.8
2,631,260	-		DZA65_RS12315	0.59	+0.8
2,631,260	-		DZA65_RS12315	0.59	+2.6
2,631,260	-		DZA65_RS12315	0.59	+0.4
2,631,384	+		DZA65_RS12315	0.72	-1.6
2,631,524	+		DZA65_RS12315	0.87	+1.7
2,631,536	+		DZA65_RS12315	0.89	-0.4
2,631,536	+		DZA65_RS12315	0.89	-0.2
2,631,536	+		DZA65_RS12315	0.89	+0.9
2,631,536	+		DZA65_RS12315	0.89	-0.7
2,631,536	+		DZA65_RS12315	0.89	-2.0
2,631,536	+		DZA65_RS12315	0.89	+0.1
2,631,537	-		DZA65_RS12315	0.89	-0.4
2,631,537	-		DZA65_RS12315	0.89	+0.7
2,631,619	-				-0.5
2,631,639	+				-0.9
2,631,639	+				-0.7