Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11835

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,523,132	+				-0.3
2,523,133	-				+0.7
2,523,164	+				-0.3
2,523,164	+				-2.0
2,523,165	-				-0.9
2,523,165	-				-0.7
2,523,210	+		DZA65_RS11830	0.15	-1.0
2,523,210	+		DZA65_RS11830	0.15	-0.2
2,523,210	+		DZA65_RS11830	0.15	+0.9
2,523,211	-		DZA65_RS11830	0.15	-1.0
2,523,211	-		DZA65_RS11830	0.15	-0.9
2,523,378	+		DZA65_RS11830	0.36	-1.0
2,523,488	+		DZA65_RS11830	0.50	+1.5
2,523,488	+		DZA65_RS11830	0.50	-1.8
2,523,488	+		DZA65_RS11830	0.50	-0.9
2,523,489	-		DZA65_RS11830	0.50	-0.8
2,523,489	-		DZA65_RS11830	0.50	-0.1
2,523,504	-		DZA65_RS11830	0.52	+0.2
2,523,520	-		DZA65_RS11830	0.54	+0.7
2,523,527	+		DZA65_RS11830	0.55	-0.9
2,523,527	+		DZA65_RS11830	0.55	-1.3
2,523,527	+		DZA65_RS11830	0.55	-0.3
2,523,528	-		DZA65_RS11830	0.55	-0.9
2,523,677	+		DZA65_RS11830	0.74	-0.9
2,523,678	-		DZA65_RS11830	0.74	+0.1
2,523,707	+		DZA65_RS11830	0.77	+0.9
2,523,707	+		DZA65_RS11830	0.77	+0.6
2,523,708	-		DZA65_RS11830	0.78	+2.6
2,523,784	-		DZA65_RS11830	0.87	-0.1
2,523,809	-				-0.9
2,523,864	+				-0.0
2,523,865	-				-1.1
2,523,865	-				-1.2
2,523,865	-				-0.9
2,523,869	-				-1.1
2,523,948	-				-1.7
2,523,966	-				+0.7
2,523,984	+				-0.0
2,523,984	+				+0.3
2,523,984	+				-0.3
2,523,984	+				-1.2
2,523,984	+				-0.2
2,523,984	+				+1.0
2,523,985	-				-0.3
2,523,985	-				-0.1
2,523,985	-				-0.6
2,523,985	-				+0.1
2,523,987	-				-0.5
2,523,987	-				+1.1
2,523,987	-				-3.5
2,524,006	+				+3.1
2,524,006	+				-0.1
2,524,006	+				-1.2
2,524,006	+				-1.1
2,524,007	-				+0.5
2,524,007	-				-2.7
2,524,035	+				-0.1
2,524,039	-				+0.1
2,524,039	-				-0.6
2,524,045	-				+0.1
2,524,049	+				+0.1
2,524,131	+				-0.2
2,524,131	+				-2.7
2,524,132	-				-0.2
2,524,132	-				+0.8
2,524,133	+				+0.1
2,524,133	+				+1.1
2,524,133	+				+0.8
2,524,133	+				-0.4
2,524,134	-				-0.8
2,524,134	-				-0.4
2,524,134	-				+1.0
2,524,163	-				-0.0
2,524,163	-				-1.5
2,524,163	-				-0.5
2,524,163	-				+0.2
2,524,171	+				-0.9
2,524,171	+				-2.0
2,524,171	+				+0.4
2,524,172	-				-1.5
2,524,172	-				-1.5
2,524,172	-				-0.5
2,524,172	-				+0.1
2,524,172	-				-0.2
2,524,172	-				-0.7
2,524,172	-				+0.3
2,524,285	+		DZA65_RS11835	0.16	+0.5
2,524,285	+		DZA65_RS11835	0.16	+1.8
2,524,286	-		DZA65_RS11835	0.16	-0.7
2,524,296	+		DZA65_RS11835	0.17	-1.5
2,524,296	+		DZA65_RS11835	0.17	-0.4
2,524,296	+		DZA65_RS11835	0.17	-2.2
2,524,296	+		DZA65_RS11835	0.17	+0.8
2,524,296	+		DZA65_RS11835	0.17	-2.5
2,524,296	+		DZA65_RS11835	0.17	-1.7
2,524,296	+		DZA65_RS11835	0.17	-0.9
2,524,296	+		DZA65_RS11835	0.17	-0.5
2,524,296	+		DZA65_RS11835	0.17	-3.0
2,524,296	+		DZA65_RS11835	0.17	-0.1
2,524,296	+		DZA65_RS11835	0.17	+1.8
2,524,296	+		DZA65_RS11835	0.17	-0.4
2,524,296	+				+0.1
2,524,296	+				+1.1
2,524,297	-		DZA65_RS11835	0.17	-0.5
2,524,297	-		DZA65_RS11835	0.17	+0.9
2,524,297	-		DZA65_RS11835	0.17	+1.0
2,524,297	-		DZA65_RS11835	0.17	+0.7
2,524,297	-		DZA65_RS11835	0.17	+1.4
2,524,323	+		DZA65_RS11835	0.19	+1.0
2,524,340	+		DZA65_RS11835	0.21	-0.9
2,524,340	+		DZA65_RS11835	0.21	-0.7
2,524,340	+		DZA65_RS11835	0.21	-0.2
2,524,341	-		DZA65_RS11835	0.21	-1.1
2,524,389	+		DZA65_RS11835	0.25	-0.5
2,524,389	+		DZA65_RS11835	0.25	-1.3
2,524,389	+		DZA65_RS11835	0.25	+0.8
2,524,389	+		DZA65_RS11835	0.25	-0.5
2,524,389	+		DZA65_RS11835	0.25	+0.1
2,524,389	+		DZA65_RS11835	0.25	-1.3
2,524,389	+		DZA65_RS11835	0.25	-2.2
2,524,389	+		DZA65_RS11835	0.25	-1.6
2,524,389	+		DZA65_RS11835	0.25	-0.3
2,524,389	+		DZA65_RS11835	0.25	-0.5
2,524,390	-		DZA65_RS11835	0.25	-0.7
2,524,390	-		DZA65_RS11835	0.25	-0.1
2,524,390	-		DZA65_RS11835	0.25	-0.4
2,524,390	-		DZA65_RS11835	0.25	-2.5
2,524,390	-		DZA65_RS11835	0.25	-0.2
2,524,390	-		DZA65_RS11835	0.25	-0.5
2,524,390	-		DZA65_RS11835	0.25	-1.1
2,524,503	+		DZA65_RS11835	0.35	-1.5
2,524,504	-		DZA65_RS11835	0.35	-1.0
2,524,504	-		DZA65_RS11835	0.35	-3.0
2,524,504	-		DZA65_RS11835	0.35	+0.1
2,524,577	-		DZA65_RS11835	0.41	-1.6
2,524,577	-		DZA65_RS11835	0.41	+0.1
2,524,582	+		DZA65_RS11835	0.42	-0.7
2,524,583	-		DZA65_RS11835	0.42	+0.2
2,524,583	-		DZA65_RS11835	0.42	-0.2
2,524,583	-		DZA65_RS11835	0.42	-1.7
2,524,583	-		DZA65_RS11835	0.42	-2.1
2,524,583	-		DZA65_RS11835	0.42	-0.1
2,524,583	-		DZA65_RS11835	0.42	-0.9
2,524,612	+		DZA65_RS11835	0.44	-0.9
2,524,612	+				+2.1
2,524,612	+		DZA65_RS11835	0.44	-0.0
2,524,613	-		DZA65_RS11835	0.44	-0.0
2,524,613	-		DZA65_RS11835	0.44	+0.6
2,524,655	+		DZA65_RS11835	0.48	+0.5
2,524,660	+		DZA65_RS11835	0.48	+0.7
2,524,660	+		DZA65_RS11835	0.48	-0.2
2,524,660	+		DZA65_RS11835	0.48	-0.9
2,524,660	+		DZA65_RS11835	0.48	-0.4
2,524,660	+		DZA65_RS11835	0.48	-0.7
2,524,661	-		DZA65_RS11835	0.48	-2.2
2,524,684	+		DZA65_RS11835	0.50	-0.9
2,524,684	+		DZA65_RS11835	0.50	-0.2
2,524,684	+		DZA65_RS11835	0.50	-1.0
2,524,684	+		DZA65_RS11835	0.50	-1.0
2,524,684	+		DZA65_RS11835	0.50	-0.3
2,524,685	-		DZA65_RS11835	0.50	-0.4
2,524,685	-		DZA65_RS11835	0.50	-0.6
2,524,717	+		DZA65_RS11835	0.53	-0.7
2,524,717	+		DZA65_RS11835	0.53	+0.5
2,524,717	+				+0.1
2,524,718	-		DZA65_RS11835	0.53	-1.5
2,524,775	-		DZA65_RS11835	0.58	-0.7
2,524,775	-		DZA65_RS11835	0.58	-0.4
2,524,779	+				+1.1
2,524,780	-		DZA65_RS11835	0.59	-0.7
2,524,780	-		DZA65_RS11835	0.59	+1.7
2,524,780	-		DZA65_RS11835	0.59	-0.2
2,524,780	-		DZA65_RS11835	0.59	-0.6
2,524,879	+		DZA65_RS11835	0.67	-0.0
2,524,880	-		DZA65_RS11835	0.67	+0.3
2,524,885	-		DZA65_RS11835	0.68	+0.1
2,524,911	+		DZA65_RS11835	0.70	-1.2
2,524,911	+		DZA65_RS11835	0.70	+1.2
2,524,911	+		DZA65_RS11835	0.70	-1.2
2,524,916	-		DZA65_RS11835	0.70	+0.3
2,524,916	-		DZA65_RS11835	0.70	-1.2
2,524,916	-		DZA65_RS11835	0.70	-1.0
2,524,933	+		DZA65_RS11835	0.72	-0.4
2,524,933	+		DZA65_RS11835	0.72	+1.1
2,524,934	-		DZA65_RS11835	0.72	-2.2
2,524,934	-		DZA65_RS11835	0.72	-0.5
2,524,934	-		DZA65_RS11835	0.72	-1.4
2,524,957	+		DZA65_RS11835	0.74	-2.0
2,524,974	+		DZA65_RS11835	0.75	+0.5
2,524,974	+		DZA65_RS11835	0.75	-0.7
2,524,974	+		DZA65_RS11835	0.75	-1.5
2,524,974	+		DZA65_RS11835	0.75	+0.8
2,524,975	-		DZA65_RS11835	0.75	+1.7
2,524,977	+		DZA65_RS11835	0.75	+1.1
2,524,978	-		DZA65_RS11835	0.75	+2.1
2,525,018	-		DZA65_RS11835	0.79	+1.4
2,525,018	-		DZA65_RS11835	0.79	-0.5
2,525,018	-		DZA65_RS11835	0.79	+0.0
2,525,018	-		DZA65_RS11835	0.79	+0.1
2,525,076	+		DZA65_RS11835	0.84	-1.5
2,525,077	-		DZA65_RS11835	0.84	-0.6
2,525,079	+		DZA65_RS11835	0.84	-0.9
2,525,080	-		DZA65_RS11835	0.84	-0.9
2,525,080	-		DZA65_RS11835	0.84	-0.2
2,525,148	+				-0.4
2,525,154	+				-1.2
2,525,155	-				-0.2
2,525,171	-				-0.1
2,525,171	-				-4.2
2,525,171	-				+0.3
2,525,223	+				-0.2
2,525,223	+				+0.1
2,525,223	+				-0.7
2,525,224	-				+1.5
2,525,227	+				-0.5
2,525,228	-				-0.8
2,525,252	-				-0.9
2,525,317	+				-0.3
2,525,318	-				-0.2
2,525,318	-				-0.9
2,525,318	-				+1.0
2,525,321	+				-0.7
2,525,321	+				+0.1
2,525,321	+				+0.5
2,525,321	+				+0.6
2,525,322	-				-1.1
2,525,322	-				-3.3
2,525,322	-				+2.0
2,525,322	-				-2.2
2,525,348	-				-0.7
2,525,348	-				+0.1
2,525,359	-				+0.1
2,525,359	-				+0.8
2,525,448	+				-0.0
2,525,448	+				+0.7
2,525,449	-				+0.1
2,525,449	-				+2.9
2,525,553	-				-0.9
2,525,562	-				-0.9
2,525,562	-				+0.4
2,525,587	-				+0.6
2,525,587	-				+0.5
2,525,640	+		DZA65_RS11840	0.10	-1.2
2,525,640	+		DZA65_RS11840	0.10	-0.2
2,525,640	+		DZA65_RS11840	0.10	+0.5
2,525,641	-		DZA65_RS11840	0.10	-0.1
2,525,664	+		DZA65_RS11840	0.13	+0.3
2,525,665	-		DZA65_RS11840	0.13	+1.3
2,525,665	-		DZA65_RS11840	0.13	-0.3
2,525,665	-		DZA65_RS11840	0.13	-0.5
2,525,688	-		DZA65_RS11840	0.15	+0.3
2,525,831	-		DZA65_RS11840	0.32	-0.4
2,525,835	+		DZA65_RS11840	0.32	-1.9
2,525,836	-		DZA65_RS11840	0.32	-1.9
2,525,849	+		DZA65_RS11840	0.34	-0.3
2,525,850	-		DZA65_RS11840	0.34	-0.6
2,525,850	-		DZA65_RS11840	0.34	+1.1
2,525,940	+		DZA65_RS11840	0.44	-0.7
2,525,940	+		DZA65_RS11840	0.44	-1.2
2,525,941	-		DZA65_RS11840	0.44	-2.2
2,525,947	+		DZA65_RS11840	0.45	-0.1
2,526,064	+		DZA65_RS11840	0.58	+2.0
2,526,123	+		DZA65_RS11840	0.65	+0.1
2,526,124	-		DZA65_RS11840	0.65	-1.7
2,526,124	-		DZA65_RS11840	0.65	+1.1
2,526,140	+		DZA65_RS11840	0.67	-1.5
2,526,140	+		DZA65_RS11840	0.67	-0.5
2,526,140	+		DZA65_RS11840	0.67	-1.1
2,526,140	+		DZA65_RS11840	0.67	-0.6
2,526,140	+		DZA65_RS11840	0.67	-0.1
2,526,140	+		DZA65_RS11840	0.67	+0.1
2,526,141	-		DZA65_RS11840	0.67	-0.9
2,526,141	-		DZA65_RS11840	0.67	-2.5
2,526,141	-		DZA65_RS11840	0.67	+0.8
2,526,141	-		DZA65_RS11840	0.67	-0.9
2,526,141	-		DZA65_RS11840	0.67	-1.2
2,526,144	+		DZA65_RS11840	0.67	-0.9
2,526,144	+		DZA65_RS11840	0.67	-1.2
2,526,145	-		DZA65_RS11840	0.67	+0.1
2,526,159	+				-0.5
2,526,160	-		DZA65_RS11840	0.69	-0.5