Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11660

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,489,535	+		DZA65_RS11655	0.73	-2.5
2,489,549	+		DZA65_RS11655	0.74	-0.4
2,489,549	+		DZA65_RS11655	0.74	-0.9
2,489,560	-		DZA65_RS11655	0.75	-2.2
2,489,560	-				-1.5
2,489,634	+		DZA65_RS11655	0.80	-1.1
2,489,634	+		DZA65_RS11655	0.80	-2.7
2,489,634	+		DZA65_RS11655	0.80	-2.0
2,489,635	-		DZA65_RS11655	0.80	-1.2
2,489,635	-		DZA65_RS11655	0.80	-1.5
2,489,764	-		DZA65_RS11655	0.88	-2.7
2,489,808	-				-1.5
2,489,808	-				-0.0
2,489,883	+				-1.5
2,489,899	-				-2.1
2,489,899	-				-2.2
2,489,899	-				-1.6
2,489,910	+				-0.1
2,489,911	-				-2.2
2,489,934	+				-0.5
2,489,935	-				-2.2
2,490,021	+				-0.9
2,490,021	+				-1.5
2,490,022	-				-1.3
2,490,027	+				-2.2
2,490,028	-				-0.6
2,490,028	-				+0.6
2,490,029	+				-0.6
2,490,029	+				-0.5
2,490,030	-				-0.9
2,490,030	-				+1.7
2,490,030	-				+0.8
2,490,030	-				-0.5
2,490,120	+				-0.6
2,490,133	+				-1.5
2,490,150	+				+0.7
2,490,150	+				-1.7
2,490,151	-				-0.5
2,490,151	-				-2.5
2,490,151	-				+0.8
2,490,154	+				-3.3
2,490,180	+				+1.7
2,490,180	+				-0.6
2,490,180	+				-1.1
2,490,180	+				-1.7
2,490,180	+				-0.4
2,490,180	+				+0.5
2,490,181	-				+1.7
2,490,181	-				-2.5
2,490,184	-				-1.3
2,490,184	-				+0.1
2,490,186	+				-1.1
2,490,187	-				-1.2
2,490,234	+				+1.3
2,490,234	+				-0.5
2,490,412	+				+0.7
2,490,412	+				+1.0
2,490,412	+				-0.4
2,490,415	+				+0.5
2,490,415	+				+0.6
2,490,415	+				+0.3
2,490,415	+				-1.2
2,490,415	+				+0.9
2,490,415	+				-0.3
2,490,415	+				+0.7
2,490,415	+				-0.1
2,490,415	+				-0.1
2,490,415	+				-0.5
2,490,416	-				+0.4
2,490,416	-				+0.5
2,490,416	-				+1.1
2,490,416	-				+0.0
2,490,423	+				-0.7
2,490,453	+				-1.5
2,490,468	+				+1.0
2,490,469	-				-0.7
2,490,469	-				+0.0
2,490,471	+				-0.4
2,490,477	+				-1.2
2,490,477	+				-0.9
2,490,477	+				-0.8
2,490,477	+				-0.1
2,490,477	+				-0.4
2,490,477	+				+0.5
2,490,477	+				-0.4
2,490,477	+				+1.7
2,490,477	+				-1.9
2,490,478	-				-0.7
2,490,541	+				+0.1
2,490,541	+				+0.3
2,490,541	+				+0.1
2,490,541	+				+0.4
2,490,542	-				+1.2
2,490,542	-				+0.8
2,490,574	+				+1.3
2,490,575	-				+1.0
2,490,578	+				+0.5
2,490,578	+				+0.8
2,490,578	+				-0.1
2,490,579	-				-2.5
2,490,579	-				-2.7
2,490,608	+				-0.1
2,490,608	+				+0.8
2,490,608	+				-1.5
2,490,608	+				+0.3
2,490,609	-				+0.9
2,490,609	-				-0.2
2,490,609	-				+0.5
2,490,609	-				-0.3
2,490,655	+				+2.1
2,490,655	+		DZA65_RS11660	0.14	+0.4
2,490,656	-				+1.1
2,490,667	-		DZA65_RS11660	0.16	-0.2
2,490,667	-		DZA65_RS11660	0.16	-0.9
2,490,827	+		DZA65_RS11660	0.33	-0.9
2,490,828	-		DZA65_RS11660	0.33	+0.8
2,491,053	+		DZA65_RS11660	0.57	+0.6
2,491,053	+		DZA65_RS11660	0.57	-0.6
2,491,054	-		DZA65_RS11660	0.57	+1.5
2,491,169	-		DZA65_RS11660	0.69	-2.1
2,491,169	-		DZA65_RS11660	0.69	+1.6
2,491,183	+		DZA65_RS11660	0.71	+0.5
2,491,288	+		DZA65_RS11660	0.82	-1.3
2,491,374	+				-0.5
2,491,416	+				+0.4
2,491,416	+				+0.6
2,491,417	-				+0.3
2,491,417	-				-1.1
2,491,417	-				+1.1
2,491,419	+				+0.3
2,491,419	+				+0.8
2,491,476	+				-1.7
2,491,476	+				-1.0
2,491,486	-				-0.1
2,491,500	+				+1.9
2,491,500	+				+0.1
2,491,501	-				-0.5
2,491,501	-				+0.3
2,491,517	+				+1.1
2,491,518	-				+1.3
2,491,518	-				-0.2
2,491,552	+				-0.4
2,491,552	+				-0.0
2,491,553	-				+1.9
2,491,556	+				+0.9
2,491,557	-				+1.3
2,491,557	-				-0.3
2,491,568	+				+1.1
2,491,629	-		DZA65_RS11665	0.14	-0.4
2,491,629	-		DZA65_RS11665	0.14	-0.5
2,491,649	-		DZA65_RS11665	0.16	-0.2
2,491,670	+		DZA65_RS11665	0.19	-0.4
2,491,671	-		DZA65_RS11665	0.19	+1.0
2,491,671	-		DZA65_RS11665	0.19	+0.1
2,491,754	+		DZA65_RS11665	0.29	-0.1
2,491,754	+		DZA65_RS11665	0.29	+1.5
2,491,757	+		DZA65_RS11665	0.30	-0.7
2,491,758	-		DZA65_RS11665	0.30	+0.5
2,491,763	+		DZA65_RS11665	0.30	-0.8
2,491,850	+		DZA65_RS11665	0.41	-0.3
2,491,850	+		DZA65_RS11665	0.41	-0.1
2,491,850	+		DZA65_RS11665	0.41	-0.6
2,491,850	+		DZA65_RS11665	0.41	-0.7
2,491,851	-		DZA65_RS11665	0.41	-1.7
2,491,851	-		DZA65_RS11665	0.41	+1.0
2,491,851	-		DZA65_RS11665	0.41	-0.1
2,491,853	+		DZA65_RS11665	0.42	+0.1
2,491,853	+		DZA65_RS11665	0.42	+0.3
2,491,854	-		DZA65_RS11665	0.42	+0.4
2,492,020	+		DZA65_RS11665	0.63	-0.7
2,492,133	+		DZA65_RS11665	0.77	+1.3
2,492,151	+		DZA65_RS11665	0.79	+0.5
2,492,151	+		DZA65_RS11665	0.79	-1.7
2,492,151	+		DZA65_RS11665	0.79	+1.2
2,492,232	+		DZA65_RS11665	0.89	+0.2
2,492,232	+		DZA65_RS11665	0.89	+0.4
2,492,232	+		DZA65_RS11665	0.89	+1.3
2,492,232	+		DZA65_RS11665	0.89	+0.4
2,492,232	+		DZA65_RS11665	0.89	-2.1
2,492,233	-		DZA65_RS11665	0.89	-0.4
2,492,233	-		DZA65_RS11665	0.89	-0.9
2,492,233	-		DZA65_RS11665	0.89	-0.2
2,492,233	-		DZA65_RS11665	0.89	+0.1
2,492,233	-		DZA65_RS11665	0.89	-1.3
2,492,233	-		DZA65_RS11665	0.89	-1.1
2,492,233	-		DZA65_RS11665	0.89	+0.1
2,492,233	-		DZA65_RS11665	0.89	-0.4
2,492,233	-		DZA65_RS11665	0.89	+0.6
2,492,234	+		DZA65_RS11665	0.89	-0.6
2,492,253	+				-0.2
2,492,253	+				-2.2
2,492,303	+				+0.9
2,492,316	+				+0.1
2,492,341	+				-0.2
2,492,342	-				-0.2
2,492,342	-				+0.6
2,492,347	+				+0.9
2,492,380	-				-1.2
2,492,380	-				+0.9
2,492,393	-				+0.0
2,492,393	-				+0.7