Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,408,372	-		DZA65_RS11325	0.70	-1.2
2,408,431	+		DZA65_RS11325	0.77	-0.4
2,408,431	+		DZA65_RS11325	0.77	-1.5
2,408,432	-		DZA65_RS11325	0.77	+0.2
2,408,633	-				+1.5
2,408,655	+				-0.9
2,408,655	+				+1.8
2,408,655	+				+0.4
2,408,655	+				-1.3
2,408,655	+				+1.8
2,408,656	-				+0.3
2,408,656	-				-1.9
2,408,656	-				+1.1
2,408,656	-				-0.3
2,408,656	-				-0.8
2,408,656	-				-0.4
2,408,657	+				-1.2
2,408,721	-				+0.1
2,408,743	+				+1.2
2,408,744	-				+1.5
2,408,744	-				-0.3
2,408,744	-				-0.3
2,408,744	-				+0.4
2,408,754	+				-1.5
2,408,776	+				+0.4
2,408,777	-				+1.6
2,408,782	+				-0.0
2,408,783	-				-0.1
2,408,783	-				-0.1
2,408,831	+		DZA65_RS11330	0.11	-0.8
2,408,831	+		DZA65_RS11330	0.11	-0.6
2,408,831	+		DZA65_RS11330	0.11	+0.3
2,408,831	+				+0.7
2,408,832	-		DZA65_RS11330	0.11	-3.3
2,408,832	-		DZA65_RS11330	0.11	-0.2
2,408,832	-		DZA65_RS11330	0.11	+0.7
2,408,832	-		DZA65_RS11330	0.11	-1.0
2,408,833	+		DZA65_RS11330	0.11	+0.1
2,408,833	+		DZA65_RS11330	0.11	+0.1
2,408,834	-		DZA65_RS11330	0.11	-0.1
2,408,856	-		DZA65_RS11330	0.16	+2.5
2,408,862	+		DZA65_RS11330	0.17	+0.1
2,408,863	-		DZA65_RS11330	0.17	+1.3
2,408,864	+		DZA65_RS11330	0.17	-0.5
2,408,864	+		DZA65_RS11330	0.17	-0.4
2,408,864	+		DZA65_RS11330	0.17	+0.3
2,408,864	+		DZA65_RS11330	0.17	+0.1
2,408,864	+		DZA65_RS11330	0.17	-2.2
2,408,864	+		DZA65_RS11330	0.17	-0.8
2,408,864	+		DZA65_RS11330	0.17	-2.3
2,408,864	+		DZA65_RS11330	0.17	+0.3
2,408,864	+		DZA65_RS11330	0.17	-0.5
2,408,864	+		DZA65_RS11330	0.17	+0.7
2,408,864	+		DZA65_RS11330	0.17	-0.0
2,408,864	+		DZA65_RS11330	0.17	+0.1
2,408,864	+		DZA65_RS11330	0.17	+0.1
2,408,864	+		DZA65_RS11330	0.17	-0.0
2,408,864	+		DZA65_RS11330	0.17	+1.0
2,408,864	+		DZA65_RS11330	0.17	-0.2
2,408,865	-		DZA65_RS11330	0.17	+0.9
2,408,865	-		DZA65_RS11330	0.17	-0.2
2,408,865	-		DZA65_RS11330	0.17	+2.6
2,408,865	-		DZA65_RS11330	0.17	-0.7
2,408,865	-		DZA65_RS11330	0.17	-0.5
2,408,865	-		DZA65_RS11330	0.17	+0.0
2,408,865	-		DZA65_RS11330	0.17	+0.1
2,408,865	-		DZA65_RS11330	0.17	-0.7
2,408,865	-		DZA65_RS11330	0.17	+0.2
2,408,865	-		DZA65_RS11330	0.17	-1.5
2,408,865	-		DZA65_RS11330	0.17	+0.2
2,408,865	-		DZA65_RS11330	0.17	-0.3
2,408,865	-				-1.9
2,408,865	-		DZA65_RS11330	0.17	-2.2
2,408,865	-		DZA65_RS11330	0.17	+1.0
2,408,865	-		DZA65_RS11330	0.17	-0.1
2,408,897	-		DZA65_RS11330	0.24	-0.8
2,408,972	+		DZA65_RS11330	0.38	-0.5
2,408,972	+		DZA65_RS11330	0.38	+0.4
2,408,972	+		DZA65_RS11330	0.38	+0.5
2,408,979	+		DZA65_RS11330	0.40	+1.3
2,408,979	+		DZA65_RS11330	0.40	+0.5
2,408,980	-		DZA65_RS11330	0.40	-0.3
2,409,134	+		DZA65_RS11330	0.70	-1.9
2,409,134	+		DZA65_RS11330	0.70	-0.1
2,409,187	+		DZA65_RS11330	0.81	-0.7
2,409,187	+		DZA65_RS11330	0.81	-1.2
2,409,188	-		DZA65_RS11330	0.81	-0.1
2,409,190	+		DZA65_RS11330	0.81	+1.2
2,409,190	+		DZA65_RS11330	0.81	-0.2
2,409,191	-		DZA65_RS11330	0.82	+0.7
2,409,221	-		DZA65_RS11330	0.88	+0.9
2,409,221	-		DZA65_RS11330	0.88	-0.3
2,409,232	+		DZA65_RS11330	0.90	+0.5
2,409,233	-				-1.2
2,409,233	-				-2.1
2,409,233	-				-0.5
2,409,233	-				-0.2
2,409,282	-				+0.1
2,409,282	-				+0.1
2,409,328	-				+0.1
2,409,328	-				+2.1
2,409,462	-				-1.7
2,409,517	-				+0.1
2,409,517	-				+0.3
2,409,567	+		DZA65_RS11335	0.11	-0.1
2,409,567	+		DZA65_RS11335	0.11	-0.4
2,409,567	+		DZA65_RS11335	0.11	+0.4
2,409,567	+		DZA65_RS11335	0.11	+1.3
2,409,568	-		DZA65_RS11335	0.11	+0.3
2,409,568	-		DZA65_RS11335	0.11	+0.2
2,409,704	+		DZA65_RS11335	0.18	+0.1
2,409,705	-		DZA65_RS11335	0.18	+0.6
2,409,947	+		DZA65_RS11335	0.31	+0.1
2,409,948	-		DZA65_RS11335	0.31	+1.3
2,409,948	-				+2.1
2,409,948	-		DZA65_RS11335	0.31	+0.1
2,409,990	-		DZA65_RS11335	0.33	+0.9
2,410,216	+		DZA65_RS11335	0.44	+1.1
2,410,216	+		DZA65_RS11335	0.44	+1.5
2,410,216	+		DZA65_RS11335	0.44	+1.3
2,410,217	-		DZA65_RS11335	0.45	+1.4
2,410,449	-		DZA65_RS11335	0.56	+0.6
2,410,449	-		DZA65_RS11335	0.56	-0.0
2,410,449	-		DZA65_RS11335	0.56	+0.4
2,410,475	+		DZA65_RS11335	0.58	-0.9
2,410,475	+		DZA65_RS11335	0.58	+0.1
2,410,476	-		DZA65_RS11335	0.58	-0.6
2,410,478	+		DZA65_RS11335	0.58	+0.1
2,410,478	+		DZA65_RS11335	0.58	+0.7
2,410,478	+		DZA65_RS11335	0.58	+0.5
2,410,479	-		DZA65_RS11335	0.58	-1.3
2,410,479	-		DZA65_RS11335	0.58	-0.3
2,410,479	-		DZA65_RS11335	0.58	+0.7
2,410,488	-		DZA65_RS11335	0.58	+1.3
2,410,592	+		DZA65_RS11335	0.64	-0.2
2,410,592	+		DZA65_RS11335	0.64	-0.6
2,410,592	+		DZA65_RS11335	0.64	+0.5
2,410,594	+		DZA65_RS11335	0.64	-0.0
2,410,594	+		DZA65_RS11335	0.64	-1.0
2,410,595	-		DZA65_RS11335	0.64	-1.2
2,410,595	-		DZA65_RS11335	0.64	+0.1
2,410,599	+		DZA65_RS11335	0.64	-1.7
2,410,613	+		DZA65_RS11335	0.65	+0.7
2,410,614	-		DZA65_RS11335	0.65	-0.3
2,410,615	+		DZA65_RS11335	0.65	+0.3
2,410,615	+		DZA65_RS11335	0.65	-1.5
2,410,615	+		DZA65_RS11335	0.65	-0.6
2,410,615	+		DZA65_RS11335	0.65	+0.3
2,410,616	-		DZA65_RS11335	0.65	-0.5
2,410,616	-		DZA65_RS11335	0.65	-1.3
2,410,655	+		DZA65_RS11335	0.67	-0.3
2,410,779	+		DZA65_RS11335	0.73	-0.1
2,410,789	+		DZA65_RS11335	0.74	+0.3
2,410,789	+		DZA65_RS11335	0.74	-0.9
2,410,789	+		DZA65_RS11335	0.74	+0.1
2,410,789	+		DZA65_RS11335	0.74	+1.7
2,410,789	+		DZA65_RS11335	0.74	+0.6
2,410,790	-		DZA65_RS11335	0.74	+0.1
2,410,790	-		DZA65_RS11335	0.74	-0.7
2,410,790	-		DZA65_RS11335	0.74	-0.2
2,410,790	-		DZA65_RS11335	0.74	-1.2
2,410,790	-		DZA65_RS11335	0.74	-1.1
2,410,799	+		DZA65_RS11335	0.74	-1.1
2,410,799	+		DZA65_RS11335	0.74	+1.3
2,410,799	+		DZA65_RS11335	0.74	-0.3
2,410,800	-		DZA65_RS11335	0.74	-0.3
2,410,800	-		DZA65_RS11335	0.74	-1.1
2,410,800	-		DZA65_RS11335	0.74	-0.0
2,410,800	-		DZA65_RS11335	0.74	+0.5
2,410,800	-		DZA65_RS11335	0.74	-0.4
2,410,810	+		DZA65_RS11335	0.75	-0.7
2,410,811	-		DZA65_RS11335	0.75	+0.7
2,410,952	-		DZA65_RS11335	0.82	-0.2
2,410,952	-		DZA65_RS11335	0.82	-1.9
2,410,958	+				+2.3
2,410,993	+		DZA65_RS11335	0.84	+1.1
2,410,993	+		DZA65_RS11335	0.84	+1.7
2,410,993	+		DZA65_RS11335	0.84	-0.6
2,410,993	+		DZA65_RS11335	0.84	+0.2
2,411,031	+		DZA65_RS11335	0.86	-1.5
2,411,053	+		DZA65_RS11335	0.87	-2.5
2,411,053	+		DZA65_RS11335	0.87	+0.4
2,411,053	+		DZA65_RS11335	0.87	+0.5
2,411,082	-		DZA65_RS11335	0.89	-1.9
2,411,090	+		DZA65_RS11335	0.89	+0.5
2,411,090	+		DZA65_RS11335	0.89	+0.1
2,411,090	+		DZA65_RS11335	0.89	-1.5
2,411,090	+		DZA65_RS11335	0.89	-0.2
2,411,091	-		DZA65_RS11335	0.89	+1.1
2,411,091	-		DZA65_RS11335	0.89	-0.5
2,411,091	-		DZA65_RS11335	0.89	+0.2
2,411,091	-		DZA65_RS11335	0.89	+1.0
2,411,091	-		DZA65_RS11335	0.89	-0.5
2,411,091	-		DZA65_RS11335	0.89	-0.4
2,411,092	+		DZA65_RS11335	0.89	+1.0
2,411,093	-		DZA65_RS11335	0.89	+1.5
2,411,093	-		DZA65_RS11335	0.89	+1.9
2,411,093	-		DZA65_RS11335	0.89	-0.3
2,411,093	-		DZA65_RS11335	0.89	-0.3
2,411,154	-				-2.7
2,411,162	+				+0.6
2,411,167	+				-0.5
2,411,167	+				-0.1
2,411,167	+				+0.3
2,411,167	+				+0.1
2,411,167	+				+0.1
2,411,167	+				+2.1
2,411,167	+				+0.3
2,411,168	-				-1.5
2,411,168	-				+0.3
2,411,168	-				+2.4
2,411,168	-				+0.8
2,411,168	-				-1.8
2,411,168	-				-0.5
2,411,168	-				+0.7
2,411,168	-				-1.5
2,411,168	-				-1.5
2,411,251	+				+0.6
2,411,252	-				+0.3
2,411,284	+				-1.1
2,411,285	-				-0.2
2,411,352	-				+1.0
2,411,357	+				-0.1
2,411,358	-				-0.1
2,411,358	-				-2.5
2,411,486	-				+1.7
2,411,486	-				+2.7
2,411,486	-				+1.1
2,411,532	+				-1.6
2,411,533	-				+0.5
2,411,533	-				-0.4
2,411,533	-				+0.7
2,411,533	-				-0.9
2,411,538	+				+0.8
2,411,538	+				-1.5
2,411,538	+				-0.5
2,411,539	-				-0.4
2,411,539	-				+0.7
2,411,539	-				+0.8
2,411,539	-				+2.1
2,411,539	-				-0.1
2,411,578	+				-0.3
2,411,651	-		DZA65_RS11340	0.19	-1.1
2,411,767	+		DZA65_RS11340	0.39	+1.1
2,411,860	+		DZA65_RS11340	0.55	+0.9
2,411,860	+		DZA65_RS11340	0.55	-0.3
2,411,860	+		DZA65_RS11340	0.55	+0.1
2,411,862	+		DZA65_RS11340	0.56	-1.7
2,411,862	+		DZA65_RS11340	0.56	+0.9
2,411,862	+		DZA65_RS11340	0.56	+0.0
2,411,862	+		DZA65_RS11340	0.56	-1.2
2,411,862	+		DZA65_RS11340	0.56	+0.1
2,411,862	+		DZA65_RS11340	0.56	+0.6
2,411,862	+		DZA65_RS11340	0.56	+1.8
2,411,862	+		DZA65_RS11340	0.56	+0.7
2,411,862	+		DZA65_RS11340	0.56	-0.7
2,411,863	-		DZA65_RS11340	0.56	+0.6
2,411,863	-		DZA65_RS11340	0.56	-1.3
2,411,863	-		DZA65_RS11340	0.56	-1.6
2,411,863	-		DZA65_RS11340	0.56	+0.4
2,411,863	-		DZA65_RS11340	0.56	-0.9
2,411,871	-		DZA65_RS11340	0.57	+0.2
2,411,882	-		DZA65_RS11340	0.59	+0.5
2,411,882	-		DZA65_RS11340	0.59	+0.7
2,411,904	+		DZA65_RS11340	0.63	-0.9
2,411,904	+		DZA65_RS11340	0.63	+1.1
2,411,904	+		DZA65_RS11340	0.63	+0.5
2,411,904	+		DZA65_RS11340	0.63	-0.2
2,411,904	+		DZA65_RS11340	0.63	-0.5
2,411,904	+		DZA65_RS11340	0.63	+0.1
2,411,904	+		DZA65_RS11340	0.63	-0.5
2,411,904	+		DZA65_RS11340	0.63	-0.8
2,411,904	+		DZA65_RS11340	0.63	-1.6
2,411,904	+		DZA65_RS11340	0.63	+1.1
2,411,905	-		DZA65_RS11340	0.63	-0.9
2,411,905	-		DZA65_RS11340	0.63	-0.1
2,411,905	-		DZA65_RS11340	0.63	+0.9
2,411,905	-		DZA65_RS11340	0.63	-0.9
2,411,905	-		DZA65_RS11340	0.63	+0.6
2,412,004	+		DZA65_RS11340	0.80	-0.1
2,412,004	+		DZA65_RS11340	0.80	-0.9
2,412,005	-		DZA65_RS11340	0.80	-0.4
2,412,007	-		DZA65_RS11340	0.80	+1.3
2,412,028	+		DZA65_RS11340	0.84	+2.8
2,412,028	+		DZA65_RS11340	0.84	-1.2
2,412,028	+		DZA65_RS11340	0.84	-0.9
2,412,028	+		DZA65_RS11340	0.84	-0.6
2,412,028	+		DZA65_RS11340	0.84	+2.9
2,412,029	-		DZA65_RS11340	0.84	-0.2
2,412,115	+				-1.2
2,412,116	-				-0.9
2,412,121	+				+0.8
2,412,121	+				+1.5
2,412,121	+				-0.7
2,412,121	+				+0.7
2,412,122	-				+0.3
2,412,122	-				-1.5
2,412,122	-				+0.1
2,412,122	-				-1.0
2,412,135	+				-0.2
2,412,136	-				-0.6
2,412,139	+				-1.3
2,412,139	+				+0.4
2,412,140	-				-0.9
2,412,140	-				-1.7
2,412,140	-				+1.6
2,412,140	-				+0.1
2,412,157	-				-3.3
2,412,174	-				-0.9
2,412,179	+				-0.3
2,412,179	+				-0.9
2,412,179	+				-1.5
2,412,179	+				+0.5
2,412,179	+				+0.4
2,412,179	+				+1.1
2,412,180	-				+0.4
2,412,180	-				-0.1
2,412,180	-				+0.0
2,412,180	-				-0.2
2,412,180	-				-0.1
2,412,180	-				-0.0
2,412,180	-				+0.8
2,412,180	-				+0.1
2,412,180	-				-0.2
2,412,181	+				+1.6
2,412,184	-				+0.4