Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11045

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,335,802	-				-0.9
2,335,802	-				+0.2
2,335,851	+				-1.2
2,336,101	+		DZA65_RS11040	0.34	+0.7
2,336,101	+		DZA65_RS11040	0.34	-2.9
2,336,102	-		DZA65_RS11040	0.34	+1.1
2,336,102	-		DZA65_RS11040	0.34	-0.9
2,336,102	-		DZA65_RS11040	0.34	-0.4
2,336,315	+		DZA65_RS11040	0.54	-1.2
2,336,315	+		DZA65_RS11040	0.54	+0.1
2,336,316	-		DZA65_RS11040	0.54	-1.2
2,336,418	+		DZA65_RS11040	0.64	+0.1
2,336,418	+		DZA65_RS11040	0.64	-0.2
2,336,418	+		DZA65_RS11040	0.64	-0.5
2,336,418	+		DZA65_RS11040	0.64	-1.3
2,336,419	-				-0.9
2,336,419	-		DZA65_RS11040	0.64	-0.3
2,336,419	-		DZA65_RS11040	0.64	-2.5
2,336,419	-		DZA65_RS11040	0.64	-2.2
2,336,419	-		DZA65_RS11040	0.64	-0.5
2,336,419	-		DZA65_RS11040	0.64	-1.5
2,336,419	-		DZA65_RS11040	0.64	-0.9
2,336,419	-		DZA65_RS11040	0.64	+0.7
2,336,424	-				+1.1
2,336,424	-		DZA65_RS11040	0.64	+1.7
2,336,424	-		DZA65_RS11040	0.64	-1.2
2,336,424	-		DZA65_RS11040	0.64	-0.4
2,336,463	+		DZA65_RS11040	0.68	-1.9
2,336,525	-		DZA65_RS11040	0.74	+0.1
2,336,740	+				+0.1
2,336,743	+				-0.2
2,336,743	+				-0.9
2,336,743	+				-1.7
2,336,743	+				-0.3
2,336,744	-				-0.3
2,336,744	-				+0.1
2,336,744	-				-0.5
2,336,744	-				-0.1
2,336,802	+				+0.6
2,336,802	+				+0.1
2,336,802	+				-1.9
2,336,803	-				-1.9
2,336,836	+				-0.9
2,336,837	-				-0.9
2,336,837	-				-0.7
2,336,987	+		DZA65_RS11045	0.11	-1.9
2,337,256	-		DZA65_RS11045	0.26	+0.5
2,337,259	-		DZA65_RS11045	0.26	+0.1
2,337,259	-		DZA65_RS11045	0.26	-0.5
2,337,292	-		DZA65_RS11045	0.28	-0.7
2,337,292	-		DZA65_RS11045	0.28	-1.4
2,337,364	+		DZA65_RS11045	0.32	-0.9
2,337,484	+		DZA65_RS11045	0.39	-0.2
2,337,484	+		DZA65_RS11045	0.39	-0.6
2,337,484	+		DZA65_RS11045	0.39	+0.1
2,337,484	+		DZA65_RS11045	0.39	-0.9
2,337,485	-		DZA65_RS11045	0.39	-1.7
2,337,485	-		DZA65_RS11045	0.39	+0.1
2,337,485	-		DZA65_RS11045	0.39	-1.0
2,337,509	+		DZA65_RS11045	0.40	+0.4
2,337,510	-		DZA65_RS11045	0.40	-0.2
2,337,611	+		DZA65_RS11045	0.46	-1.6
2,337,612	-		DZA65_RS11045	0.46	-0.6
2,337,612	-		DZA65_RS11045	0.46	-0.0
2,337,612	-		DZA65_RS11045	0.46	-0.3
2,337,752	+		DZA65_RS11045	0.54	-0.2
2,337,753	-		DZA65_RS11045	0.54	-1.5
2,337,753	-		DZA65_RS11045	0.54	-1.0
2,337,753	-		DZA65_RS11045	0.54	-0.9
2,337,753	-		DZA65_RS11045	0.54	+2.0
2,337,806	-		DZA65_RS11045	0.57	+0.3
2,337,812	+		DZA65_RS11045	0.57	-0.5
2,337,813	-		DZA65_RS11045	0.57	+1.3
2,337,838	-		DZA65_RS11045	0.59	+0.4
2,337,940	+		DZA65_RS11045	0.65	+0.1
2,337,986	+		DZA65_RS11045	0.67	-0.7
2,337,987	-		DZA65_RS11045	0.67	-0.6
2,337,987	-		DZA65_RS11045	0.67	-0.0
2,337,987	-		DZA65_RS11045	0.67	-0.3
2,337,987	-		DZA65_RS11045	0.67	+0.1
2,337,987	-		DZA65_RS11045	0.67	-1.8
2,337,987	-		DZA65_RS11045	0.67	-2.7
2,338,030	+		DZA65_RS11045	0.70	-0.1
2,338,031	-		DZA65_RS11045	0.70	-0.1
2,338,032	+		DZA65_RS11045	0.70	-0.7
2,338,033	-		DZA65_RS11045	0.70	+0.6
2,338,033	-				+2.6
2,338,033	-		DZA65_RS11045	0.70	-0.4
2,338,033	-		DZA65_RS11045	0.70	-0.1
2,338,033	-		DZA65_RS11045	0.70	-0.6
2,338,067	-		DZA65_RS11045	0.72	+0.4
2,338,237	+		DZA65_RS11045	0.81	-0.5
2,338,238	-		DZA65_RS11045	0.81	+0.1
2,338,279	+		DZA65_RS11045	0.84	-0.7
2,338,279	+		DZA65_RS11045	0.84	-0.3
2,338,279	+		DZA65_RS11045	0.84	-1.1
2,338,279	+		DZA65_RS11045	0.84	+0.1
2,338,280	-		DZA65_RS11045	0.84	-1.4
2,338,280	-		DZA65_RS11045	0.84	+0.1
2,338,280	-		DZA65_RS11045	0.84	-1.2
2,338,280	-		DZA65_RS11045	0.84	+0.4
2,338,280	-		DZA65_RS11045	0.84	+0.1
2,338,280	-		DZA65_RS11045	0.84	-0.8
2,338,280	-		DZA65_RS11045	0.84	-0.9
2,338,280	-		DZA65_RS11045	0.84	-1.5
2,338,440	+				+0.1
2,338,440	+				+0.8
2,338,440	+				-1.8
2,338,559	-				+0.4
2,338,659	+		DZA65_RS11050	0.17	+0.5
2,338,660	-		DZA65_RS11050	0.17	+1.4
2,338,660	-		DZA65_RS11050	0.17	+0.3
2,338,660	-		DZA65_RS11050	0.17	-0.9
2,338,730	+		DZA65_RS11050	0.29	-0.7
2,338,730	+		DZA65_RS11050	0.29	+0.6
2,338,730	+		DZA65_RS11050	0.29	-0.7
2,338,730	+		DZA65_RS11050	0.29	+1.4
2,338,730	+		DZA65_RS11050	0.29	+1.2
2,338,734	+		DZA65_RS11050	0.30	+0.7
2,338,734	+		DZA65_RS11050	0.30	-0.5
2,338,734	+		DZA65_RS11050	0.30	-1.1
2,338,735	-		DZA65_RS11050	0.30	+1.6
2,338,735	-		DZA65_RS11050	0.30	-1.9
2,339,322	+		DZA65_RS11055	0.30	-0.4
2,339,322	+		DZA65_RS11055	0.30	-0.2
2,339,323	-		DZA65_RS11055	0.30	-0.0
2,339,323	-		DZA65_RS11055	0.30	-0.8
2,339,323	-		DZA65_RS11055	0.30	-0.3
2,339,323	-		DZA65_RS11055	0.30	-0.3
2,339,323	-		DZA65_RS11055	0.30	-1.5
2,339,402	-		DZA65_RS11055	0.44	+0.7
2,339,513	+		DZA65_RS11055	0.63	-0.6
2,339,513	+		DZA65_RS11055	0.63	-1.5
2,339,513	+		DZA65_RS11055	0.63	-0.0
2,339,513	+		DZA65_RS11055	0.63	+1.3
2,339,514	-		DZA65_RS11055	0.63	-2.9
2,339,518	-		DZA65_RS11055	0.64	-0.5
2,339,544	+		DZA65_RS11055	0.68	-0.1
2,339,544	+		DZA65_RS11055	0.68	-0.1
2,339,544	+		DZA65_RS11055	0.68	-1.1
2,339,544	+				+0.1
2,339,544	+		DZA65_RS11055	0.68	+0.5
2,339,545	-		DZA65_RS11055	0.68	-0.1
2,339,545	-		DZA65_RS11055	0.68	-1.5