Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11025

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,332,775	+				-1.9
2,332,775	+				-0.6
2,332,776	-				-1.0
2,332,982	+		DZA65_RS11020	0.29	+0.1
2,332,983	-		DZA65_RS11020	0.29	-0.6
2,332,983	-		DZA65_RS11020	0.29	-1.9
2,332,983	-		DZA65_RS11020	0.29	-2.2
2,332,999	+		DZA65_RS11020	0.31	+1.3
2,333,071	+		DZA65_RS11020	0.38	-1.7
2,333,071	+				-0.9
2,333,071	+		DZA65_RS11020	0.38	-3.1
2,333,071	+		DZA65_RS11020	0.38	-1.5
2,333,071	+		DZA65_RS11020	0.38	-2.2
2,333,159	+				-0.9
2,333,159	+		DZA65_RS11020	0.47	-0.4
2,333,160	-		DZA65_RS11020	0.47	-1.2
2,333,187	-		DZA65_RS11020	0.50	-1.5
2,333,271	-		DZA65_RS11020	0.59	+0.1
2,333,285	+		DZA65_RS11020	0.60	+1.4
2,333,285	+		DZA65_RS11020	0.60	+3.4
2,333,285	+		DZA65_RS11020	0.60	-1.6
2,333,285	+		DZA65_RS11020	0.60	-0.7
2,333,286	-		DZA65_RS11020	0.60	-0.8
2,333,286	-		DZA65_RS11020	0.60	+1.1
2,333,287	+		DZA65_RS11020	0.61	-1.3
2,333,287	+		DZA65_RS11020	0.61	-0.9
2,333,287	+		DZA65_RS11020	0.61	-1.5
2,333,288	-		DZA65_RS11020	0.61	-0.3
2,333,387	-		DZA65_RS11020	0.71	-1.2
2,333,393	+		DZA65_RS11020	0.71	+0.1
2,333,394	-		DZA65_RS11020	0.71	+1.1
2,333,495	+		DZA65_RS11020	0.82	-0.9
2,333,497	+		DZA65_RS11020	0.82	-1.9
2,333,498	-		DZA65_RS11020	0.82	-0.9
2,333,498	-		DZA65_RS11020	0.82	-0.5
2,333,540	-		DZA65_RS11020	0.86	-0.9
2,333,543	+		DZA65_RS11020	0.87	-1.3
2,333,543	+		DZA65_RS11020	0.87	-1.8
2,333,543	+		DZA65_RS11020	0.87	+0.5
2,333,544	-		DZA65_RS11020	0.87	-1.5
2,333,544	-		DZA65_RS11020	0.87	-0.9
2,333,544	-		DZA65_RS11020	0.87	+0.1
2,333,545	+		DZA65_RS11020	0.87	+0.3
2,333,545	+		DZA65_RS11020	0.87	-0.2
2,333,545	+		DZA65_RS11020	0.87	+0.1
2,333,546	-		DZA65_RS11020	0.87	+0.1
2,333,546	-		DZA65_RS11020	0.87	-1.5
2,333,549	+		DZA65_RS11020	0.87	+0.8
2,333,653	+				+0.0
2,333,670	-				-0.9
2,333,740	+				-2.2
2,333,741	-				+0.6
2,333,741	-				-0.7
2,333,741	-				+0.6
2,333,746	+				+1.1
2,333,746	+				-0.1
2,333,746	+				+0.2
2,333,746	+				-1.2
2,333,747	-				-0.2
2,333,747	-				-1.5
2,333,747	-				+1.3
2,333,747	-				+0.1
2,333,747	-				-0.4
2,333,747	-				+0.8
2,333,747	-				+0.4
2,333,747	-				+0.6
2,333,747	-				+1.1
2,333,750	+				+0.1
2,333,750	+				-0.9
2,333,750	+				+0.6
2,333,751	-				-0.1
2,333,788	+				-0.6
2,333,788	+				-0.2
2,333,789	-				+0.4
2,333,790	+				+0.2
2,333,790	+				+0.1
2,333,791	-				+1.0
2,333,807	+				-0.5
2,333,807	+				+0.6
2,333,848	+		DZA65_RS11025	0.13	-0.5
2,333,848	+		DZA65_RS11025	0.13	-1.3
2,333,848	+		DZA65_RS11025	0.13	+0.4
2,333,848	+		DZA65_RS11025	0.13	-0.2
2,333,849	-		DZA65_RS11025	0.13	+0.4
2,334,110	-		DZA65_RS11025	0.54	-1.9
2,334,178	+		DZA65_RS11025	0.64	+0.8
2,334,178	+		DZA65_RS11025	0.64	-1.2
2,334,178	+		DZA65_RS11025	0.64	+1.5
2,334,178	+		DZA65_RS11025	0.64	-0.8
2,334,178	+		DZA65_RS11025	0.64	-0.5
2,334,179	-		DZA65_RS11025	0.65	-1.2
2,334,179	-		DZA65_RS11025	0.65	+1.4
2,334,179	-		DZA65_RS11025	0.65	-0.2
2,334,179	-		DZA65_RS11025	0.65	+0.4
2,334,179	-		DZA65_RS11025	0.65	-1.2
2,334,179	-		DZA65_RS11025	0.65	-0.5
2,334,179	-		DZA65_RS11025	0.65	+0.4
2,334,179	-		DZA65_RS11025	0.65	-1.5
2,334,179	-		DZA65_RS11025	0.65	-0.6
2,334,180	+		DZA65_RS11025	0.65	+1.0
2,334,180	+		DZA65_RS11025	0.65	-1.4
2,334,180	+		DZA65_RS11025	0.65	+0.1
2,334,180	+		DZA65_RS11025	0.65	-1.5
2,334,180	+		DZA65_RS11025	0.65	-0.4
2,334,180	+				-0.3
2,334,180	+		DZA65_RS11025	0.65	-1.1
2,334,180	+		DZA65_RS11025	0.65	-0.8
2,334,180	+		DZA65_RS11025	0.65	+1.0
2,334,181	-		DZA65_RS11025	0.65	+0.3
2,334,181	-		DZA65_RS11025	0.65	+0.7
2,334,181	-		DZA65_RS11025	0.65	-1.0
2,334,181	-		DZA65_RS11025	0.65	-0.1
2,334,181	-		DZA65_RS11025	0.65	+0.8
2,334,181	-		DZA65_RS11025	0.65	-2.5
2,334,181	-		DZA65_RS11025	0.65	-2.2
2,334,226	+		DZA65_RS11025	0.72	-0.9
2,334,374	-				+0.1
2,334,403	+				-0.3
2,334,403	+				-2.4
2,334,403	+				-1.4
2,334,419	+				-0.2
2,334,419	+				-2.1
2,334,419	+				+0.1
2,334,419	+				+0.1
2,334,419	+				-0.8
2,334,419	+				-0.4
2,334,420	-				-2.5
2,334,420	-				-1.7
2,334,420	-				-0.3
2,334,420	-				-0.1
2,334,420	-				+0.3
2,334,420	-				+1.7
2,334,431	+				-2.2
2,334,431	+				-0.9
2,334,432	-				-0.2
2,334,461	+				-1.4
2,334,500	-		DZA65_RS11030	0.13	-0.2
2,334,500	-		DZA65_RS11030	0.13	-1.5
2,334,500	-		DZA65_RS11030	0.13	+0.8
2,334,500	-		DZA65_RS11030	0.13	-1.5
2,334,575	+		DZA65_RS11030	0.24	-0.5
2,334,576	-		DZA65_RS11030	0.24	+1.5
2,334,595	-		DZA65_RS11030	0.27	-0.4
2,334,684	+		DZA65_RS11030	0.40	-0.9
2,334,685	-		DZA65_RS11030	0.40	+0.8
2,334,744	-		DZA65_RS11030	0.48	-0.0
2,334,782	+		DZA65_RS11030	0.53	-2.5
2,334,782	+		DZA65_RS11030	0.53	+0.7
2,334,783	-		DZA65_RS11030	0.54	-0.3
2,334,783	-		DZA65_RS11030	0.54	+1.3
2,334,783	-		DZA65_RS11030	0.54	+0.6
2,334,807	-		DZA65_RS11030	0.57	+1.1
2,334,842	-		DZA65_RS11030	0.62	+1.1
2,334,842	-		DZA65_RS11030	0.62	+0.1
2,334,842	-		DZA65_RS11030	0.62	+1.7
2,334,895	+		DZA65_RS11030	0.70	-1.0
2,334,961	-		DZA65_RS11030	0.79	-1.5
2,335,114	+				-0.4
2,335,114	+				+0.5
2,335,114	+				-0.7
2,335,114	+				+0.1
2,335,115	-				+0.4
2,335,391	-		DZA65_RS11035	0.45	+1.1