Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10970

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,320,336	-		DZA65_RS10965	0.66	-0.3
2,320,344	+		DZA65_RS10965	0.67	+0.1
2,320,345	-		DZA65_RS10965	0.67	-0.5
2,320,345	-		DZA65_RS10965	0.67	-0.3
2,320,494	-		DZA65_RS10965	0.76	+1.8
2,320,534	+		DZA65_RS10965	0.79	+0.8
2,320,574	+		DZA65_RS10965	0.82	-2.1
2,320,574	+		DZA65_RS10965	0.82	-0.2
2,320,574	+		DZA65_RS10965	0.82	-0.5
2,320,575	-		DZA65_RS10965	0.82	-2.5
2,320,575	-		DZA65_RS10965	0.82	-3.2
2,320,868	+				-2.4
2,320,868	+				-0.2
2,320,868	+				-1.8
2,320,875	-				+1.2
2,320,885	+				-0.6
2,320,935	-				-0.3
2,320,956	+				-0.4
2,320,965	+				-1.9
2,320,966	-				-3.2
2,320,966	-				+0.2
2,321,032	+				+0.5
2,321,087	+				-1.9
2,321,088	-				+0.7
2,321,264	+				+0.8
2,321,265	-				-0.6
2,321,265	-				-1.5
2,321,265	-				+0.9
2,321,284	+				+0.6
2,321,347	+		DZA65_RS10970	0.13	-0.5
2,321,408	+		DZA65_RS10970	0.20	+0.1
2,321,408	+		DZA65_RS10970	0.20	-0.2
2,321,409	-		DZA65_RS10970	0.20	+1.0
2,321,409	-		DZA65_RS10970	0.20	+0.8
2,321,409	-		DZA65_RS10970	0.20	-1.4
2,321,410	+		DZA65_RS10970	0.20	+0.8
2,321,494	+		DZA65_RS10970	0.30	+3.0
2,321,495	-		DZA65_RS10970	0.30	+1.8
2,321,538	+		DZA65_RS10970	0.35	+0.1
2,321,538	+		DZA65_RS10970	0.35	+0.6
2,321,538	+		DZA65_RS10970	0.35	+0.1
2,321,539	-		DZA65_RS10970	0.35	+1.7
2,321,541	+		DZA65_RS10970	0.35	+1.3
2,321,684	+		DZA65_RS10970	0.52	-1.1
2,321,759	+		DZA65_RS10970	0.60	+2.1
2,321,759	+		DZA65_RS10970	0.60	-0.2
2,321,779	+		DZA65_RS10970	0.62	-1.8
2,321,780	-		DZA65_RS10970	0.63	-1.2
2,321,784	+		DZA65_RS10970	0.63	+0.8
2,321,784	+		DZA65_RS10970	0.63	+1.9
2,321,784	+		DZA65_RS10970	0.63	+1.2
2,321,784	+		DZA65_RS10970	0.63	-1.3
2,321,784	+		DZA65_RS10970	0.63	-3.7
2,321,784	+		DZA65_RS10970	0.63	+0.8
2,321,785	-		DZA65_RS10970	0.63	-0.2
2,321,785	-		DZA65_RS10970	0.63	-1.6
2,321,785	-		DZA65_RS10970	0.63	+1.5
2,321,785	-		DZA65_RS10970	0.63	+1.5
2,321,957	+		DZA65_RS10970	0.83	+0.8
2,321,957	+		DZA65_RS10970	0.83	-0.3
2,321,958	-		DZA65_RS10970	0.83	+1.1
2,321,958	-		DZA65_RS10970	0.83	-0.2
2,321,981	+		DZA65_RS10970	0.86	+0.1
2,321,981	+		DZA65_RS10970	0.86	-0.6
2,321,982	-		DZA65_RS10970	0.86	-0.0
2,322,033	+				+0.6
2,322,034	-				+0.1
2,322,114	+				+0.4
2,322,115	-				-0.2
2,322,115	-				-2.5
2,322,115	-				-1.7
2,322,118	+				+1.6
2,322,118	+				+0.1
2,322,118	+				+1.1
2,322,119	-				-0.3
2,322,119	-				-1.5
2,322,119	-				-0.2
2,322,119	-				+2.0
2,322,169	+				+0.3
2,322,169	+				-0.6
2,322,169	+				-0.3
2,322,169	+				-1.0
2,322,169	+				-0.5
2,322,170	-				+1.2
2,322,170	-				+1.5
2,322,170	-				-0.5
2,322,193	+				-0.9
2,322,193	+				+2.1
2,322,193	+				+0.1
2,322,193	+				-1.3
2,322,193	+				-0.8
2,322,194	-				+0.3
2,322,194	-				+0.8
2,322,194	-				-0.4
2,322,194	-				-0.2
2,322,194	-				-1.3
2,322,194	-				-0.8
2,322,194	-				-1.7
2,322,194	-				-0.9
2,322,212	+				-0.2
2,322,212	+				+1.5
2,322,212	+				+1.3
2,322,213	-				+0.1
2,322,213	-				+1.1
2,322,215	-				-0.0
2,322,215	-				+1.7
2,322,290	+		DZA65_RS10975	0.15	+0.9
2,322,334	+		DZA65_RS10975	0.22	+0.6
2,322,334	+		DZA65_RS10975	0.22	+0.3
2,322,335	-		DZA65_RS10975	0.22	+0.3
2,322,428	+		DZA65_RS10975	0.37	+3.0
2,322,428	+		DZA65_RS10975	0.37	-1.2
2,322,428	+		DZA65_RS10975	0.37	+0.1
2,322,428	+		DZA65_RS10975	0.37	-0.9
2,322,428	+		DZA65_RS10975	0.37	-0.5
2,322,428	+		DZA65_RS10975	0.37	-0.5
2,322,428	+		DZA65_RS10975	0.37	-0.6
2,322,428	+		DZA65_RS10975	0.37	-1.2
2,322,428	+		DZA65_RS10975	0.37	+1.3
2,322,429	-		DZA65_RS10975	0.37	-1.8
2,322,434	+		DZA65_RS10975	0.38	+0.8
2,322,434	+		DZA65_RS10975	0.38	-0.5
2,322,434	+		DZA65_RS10975	0.38	-0.4
2,322,434	+		DZA65_RS10975	0.38	-0.5
2,322,434	+		DZA65_RS10975	0.38	-1.5
2,322,434	+		DZA65_RS10975	0.38	+1.1
2,322,434	+		DZA65_RS10975	0.38	-0.7
2,322,434	+		DZA65_RS10975	0.38	-0.9
2,322,434	+		DZA65_RS10975	0.38	+0.8
2,322,434	+		DZA65_RS10975	0.38	-0.2
2,322,434	+		DZA65_RS10975	0.38	+1.0
2,322,434	+		DZA65_RS10975	0.38	+1.2
2,322,435	-		DZA65_RS10975	0.38	-2.2
2,322,435	-		DZA65_RS10975	0.38	+1.3
2,322,435	-		DZA65_RS10975	0.38	-1.1
2,322,435	-		DZA65_RS10975	0.38	-0.6
2,322,435	-		DZA65_RS10975	0.38	-2.5
2,322,435	-		DZA65_RS10975	0.38	-0.7
2,322,435	-		DZA65_RS10975	0.38	-0.6
2,322,435	-		DZA65_RS10975	0.38	-0.3
2,322,435	-				+1.1
2,322,435	-		DZA65_RS10975	0.38	+0.0
2,322,443	-		DZA65_RS10975	0.40	+0.1
2,322,469	+		DZA65_RS10975	0.44	+0.6
2,322,469	+		DZA65_RS10975	0.44	+0.8
2,322,469	+		DZA65_RS10975	0.44	-1.5
2,322,469	+		DZA65_RS10975	0.44	-0.6
2,322,470	-		DZA65_RS10975	0.44	+0.3
2,322,470	-		DZA65_RS10975	0.44	+1.7
2,322,470	-		DZA65_RS10975	0.44	+1.6
2,322,473	-		DZA65_RS10975	0.44	+0.0
2,322,473	-		DZA65_RS10975	0.44	+0.0
2,322,485	+		DZA65_RS10975	0.46	-0.0
2,322,485	+				-2.2
2,322,485	+		DZA65_RS10975	0.46	+1.4
2,322,486	-		DZA65_RS10975	0.47	+0.3
2,322,486	-		DZA65_RS10975	0.47	-0.2
2,322,493	+		DZA65_RS10975	0.48	+0.4
2,322,493	+		DZA65_RS10975	0.48	+0.4
2,322,494	-		DZA65_RS10975	0.48	-1.5
2,322,494	-		DZA65_RS10975	0.48	-1.5
2,322,499	+		DZA65_RS10975	0.49	+1.1
2,322,500	-		DZA65_RS10975	0.49	-0.0
2,322,615	+		DZA65_RS10975	0.67	-0.4
2,322,840	+				-0.4
2,322,877	+				-0.4
2,322,877	+				-0.9
2,322,878	-				+0.6
2,322,900	+				-1.5
2,322,901	-				+0.1
2,323,074	+				-0.9
2,323,074	+				-0.9