Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10845

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,292,628	-		DZA65_RS10840	0.43	+0.8
2,292,693	+		DZA65_RS10840	0.54	+0.4
2,292,693	+		DZA65_RS10840	0.54	+0.8
2,292,693	+		DZA65_RS10840	0.54	-0.6
2,292,694	-		DZA65_RS10840	0.54	+0.5
2,292,762	-		DZA65_RS10840	0.65	-0.3
2,292,796	+		DZA65_RS10840	0.71	-0.2
2,292,821	-		DZA65_RS10840	0.75	-0.3
2,292,835	-		DZA65_RS10840	0.77	+0.5
2,292,835	-		DZA65_RS10840	0.77	-1.5
2,292,905	+		DZA65_RS10840	0.89	+0.3
2,292,906	-		DZA65_RS10840	0.89	+2.4
2,292,906	-		DZA65_RS10840	0.89	+0.6
2,292,910	-		DZA65_RS10840	0.90	-1.1
2,292,929	+				-0.1
2,292,932	-				+1.0
2,292,969	-				+0.5
2,292,973	+				+0.5
2,292,974	-				+1.4
2,292,976	-				+1.4
2,292,977	+				+0.2
2,292,977	+				-0.2
2,292,978	-				-0.1
2,292,978	-				+0.9
2,292,978	-				+0.7
2,292,987	-				-0.4
2,293,083	-				-0.2
2,293,101	+				+0.5
2,293,101	+				+0.9
2,293,101	+				+0.3
2,293,102	-				-0.1
2,293,102	-				-0.1
2,293,102	-				+0.8
2,293,109	+				-0.1
2,293,109	+				-1.5
2,293,109	+				+0.6
2,293,110	-				-2.9
2,293,130	-				-0.5
2,293,130	-				-1.9
2,293,165	+				-1.6
2,293,167	+				+0.0
2,293,167	+				+1.1
2,293,167	+				-0.9
2,293,167	+				-0.1
2,293,167	+				-1.9
2,293,167	+				+0.1
2,293,167	+				+0.4
2,293,168	-				-0.7
2,293,168	-				-0.3
2,293,168	-				-1.1
2,293,168	-				-0.4
2,293,169	+				+1.2
2,293,169	+				-0.5
2,293,169	+				-1.5
2,293,170	-				+0.2
2,293,170	-				+1.1
2,293,170	-				-0.1
2,293,170	-				-0.2
2,293,170	-				+0.9
2,293,170	-				-0.5
2,293,170	-				+0.3
2,293,170	-				+0.1
2,293,170	-				+0.1
2,293,171	+				-0.1
2,293,171	+				+0.7
2,293,171	+				-1.7
2,293,172	-				-0.7
2,293,172	-				+0.2
2,293,172	-				+0.1
2,293,172	-				+1.4
2,293,172	-				-0.1
2,293,172	-				-0.7
2,293,176	+				-0.4
2,293,176	+				-2.2
2,293,176	+				-1.1
2,293,177	-				-1.5
2,293,177	-				+0.1
2,293,180	+				+0.5
2,293,180	+				-0.4
2,293,180	+				+0.5
2,293,185	-				+0.5
2,293,195	-				-2.0
2,293,197	+				+0.6
2,293,198	-				+0.0
2,293,198	-				+0.2
2,293,258	+				-0.9
2,293,270	-				-0.2
2,293,274	+				+1.1
2,293,275	-				+0.3
2,293,278	+				-0.4
2,293,344	+				-0.1
2,293,345	-				-1.5
2,293,366	+				+1.7
2,293,426	-				+0.6
2,293,428	+				+0.3
2,293,428	+				-0.5
2,293,428	+				+0.3
2,293,428	+				-0.0
2,293,429	-				+0.6
2,293,429	-				+0.6
2,293,429	-				+0.6
2,293,435	-				+0.9
2,293,435	-				+1.7
2,293,435	-				-0.0
2,293,438	-				-0.7
2,293,438	-				+0.7
2,293,486	+				-0.1
2,293,487	-				+0.3
2,293,487	-				+1.4
2,293,501	+				-0.2
2,293,502	-				+0.4
2,293,502	-				-0.6
2,293,502	-				+0.3
2,293,502	-				-0.2
2,293,502	-				+0.4
2,293,534	-				-0.7
2,293,614	-				+0.9
2,293,693	-				-1.2
2,293,730	+				+1.0
2,293,731	-				-1.5
2,293,731	-				-0.7
2,293,731	-				+0.3
2,293,794	+				+1.0
2,293,795	-				-0.9
2,293,858	+				+0.1
2,293,858	+				-0.4
2,293,875	+				-0.2
2,293,875	+				+0.4
2,293,876	-				+1.0
2,293,876	-				-0.6
2,293,972	+				+0.1
2,293,972	+		DZA65_RS10845	0.13	+1.9
2,293,972	+		DZA65_RS10845	0.13	-0.0
2,293,973	-		DZA65_RS10845	0.13	+0.7
2,293,973	-		DZA65_RS10845	0.13	-0.6
2,293,985	-		DZA65_RS10845	0.14	-0.7
2,293,994	+		DZA65_RS10845	0.14	+0.8
2,293,994	+		DZA65_RS10845	0.14	-0.5
2,294,021	+		DZA65_RS10845	0.15	-1.1
2,294,022	-		DZA65_RS10845	0.15	+0.3
2,294,066	+		DZA65_RS10845	0.17	+0.7
2,294,067	-		DZA65_RS10845	0.17	+2.2
2,294,067	-		DZA65_RS10845	0.17	+0.3
2,294,082	+		DZA65_RS10845	0.17	-0.2
2,294,249	+		DZA65_RS10845	0.23	+0.4
2,294,250	-		DZA65_RS10845	0.23	-0.3
2,294,250	-		DZA65_RS10845	0.23	+1.9
2,294,250	-		DZA65_RS10845	0.23	-1.5
2,294,309	+		DZA65_RS10845	0.26	-0.1
2,294,310	-		DZA65_RS10845	0.26	-1.6
2,294,329	+		DZA65_RS10845	0.26	+0.4
2,294,333	+		DZA65_RS10845	0.27	+1.8
2,294,333	+		DZA65_RS10845	0.27	+0.9
2,294,333	+		DZA65_RS10845	0.27	-0.3
2,294,333	+		DZA65_RS10845	0.27	-1.9
2,294,333	+		DZA65_RS10845	0.27	+0.4
2,294,333	+		DZA65_RS10845	0.27	-0.6
2,294,334	-		DZA65_RS10845	0.27	+1.0
2,294,334	-		DZA65_RS10845	0.27	+0.5
2,294,334	-		DZA65_RS10845	0.27	-0.9
2,294,445	-		DZA65_RS10845	0.31	-0.6
2,294,526	+		DZA65_RS10845	0.34	+1.2
2,294,527	-		DZA65_RS10845	0.34	+0.8
2,294,576	+		DZA65_RS10845	0.36	+0.4
2,294,576	+		DZA65_RS10845	0.36	-1.0
2,294,576	+		DZA65_RS10845	0.36	+1.1
2,294,577	-		DZA65_RS10845	0.36	+1.0
2,294,577	-		DZA65_RS10845	0.36	-0.3
2,294,577	-		DZA65_RS10845	0.36	-1.2
2,294,577	-		DZA65_RS10845	0.36	+0.2
2,294,580	+		DZA65_RS10845	0.36	-1.1
2,294,580	+		DZA65_RS10845	0.36	-1.5
2,294,581	-		DZA65_RS10845	0.36	-1.5
2,294,581	-		DZA65_RS10845	0.36	+0.1
2,294,590	+		DZA65_RS10845	0.36	+0.1
2,294,590	+		DZA65_RS10845	0.36	-0.0
2,294,590	+				-1.5
2,294,590	+		DZA65_RS10845	0.36	+0.9
2,294,590	+		DZA65_RS10845	0.36	-0.1
2,294,591	-		DZA65_RS10845	0.36	+0.1
2,294,591	-		DZA65_RS10845	0.36	-2.6
2,294,592	+		DZA65_RS10845	0.36	+0.3
2,294,593	-		DZA65_RS10845	0.36	-1.1
2,294,598	+		DZA65_RS10845	0.36	-2.0
2,294,599	-		DZA65_RS10845	0.36	-2.5
2,294,642	+		DZA65_RS10845	0.38	+1.1
2,294,642	+		DZA65_RS10845	0.38	-0.3
2,294,642	+		DZA65_RS10845	0.38	+0.7
2,294,642	+		DZA65_RS10845	0.38	-0.1
2,294,642	+		DZA65_RS10845	0.38	-0.3
2,294,643	-		DZA65_RS10845	0.38	-0.2
2,294,643	-		DZA65_RS10845	0.38	+0.2
2,294,643	-		DZA65_RS10845	0.38	+0.4
2,294,771	-		DZA65_RS10845	0.43	+0.6
2,294,820	+		DZA65_RS10845	0.45	+0.3
2,294,820	+		DZA65_RS10845	0.45	+1.4
2,294,820	+		DZA65_RS10845	0.45	+2.4
2,294,820	+		DZA65_RS10845	0.45	+2.7
2,294,820	+		DZA65_RS10845	0.45	+0.4
2,294,821	-		DZA65_RS10845	0.45	-0.1
2,294,821	-		DZA65_RS10845	0.45	-0.1
2,294,821	-		DZA65_RS10845	0.45	+0.6
2,294,821	-		DZA65_RS10845	0.45	+1.7
2,294,835	-		DZA65_RS10845	0.45	-0.3
2,294,835	-		DZA65_RS10845	0.45	+0.9
2,294,835	-		DZA65_RS10845	0.45	-0.3
2,294,835	-		DZA65_RS10845	0.45	-1.9
2,294,937	-		DZA65_RS10845	0.49	+0.5
2,294,937	-		DZA65_RS10845	0.49	+0.5
2,294,937	-		DZA65_RS10845	0.49	-1.9
2,294,937	-		DZA65_RS10845	0.49	+1.3
2,294,950	+		DZA65_RS10845	0.49	+0.4
2,294,967	+		DZA65_RS10845	0.50	+1.2
2,294,967	+		DZA65_RS10845	0.50	+1.1
2,294,967	+		DZA65_RS10845	0.50	+0.9
2,294,967	+		DZA65_RS10845	0.50	+0.0
2,294,967	+		DZA65_RS10845	0.50	+1.1
2,294,968	-		DZA65_RS10845	0.50	-0.2
2,294,968	-		DZA65_RS10845	0.50	-0.7
2,294,968	-		DZA65_RS10845	0.50	-1.3
2,294,968	-		DZA65_RS10845	0.50	+1.3
2,294,968	-		DZA65_RS10845	0.50	+0.4
2,294,968	-		DZA65_RS10845	0.50	-0.4
2,294,968	-		DZA65_RS10845	0.50	+0.4
2,294,994	+		DZA65_RS10845	0.51	+1.1
2,294,995	-		DZA65_RS10845	0.51	-1.5
2,295,085	-		DZA65_RS10845	0.54	+1.1
2,295,085	-		DZA65_RS10845	0.54	-0.5
2,295,092	+		DZA65_RS10845	0.55	+2.7
2,295,092	+		DZA65_RS10845	0.55	-0.1
2,295,092	+		DZA65_RS10845	0.55	+0.1
2,295,093	-		DZA65_RS10845	0.55	+0.7
2,295,093	-		DZA65_RS10845	0.55	+0.1
2,295,093	-		DZA65_RS10845	0.55	-0.1
2,295,126	+		DZA65_RS10845	0.56	-1.3
2,295,126	+		DZA65_RS10845	0.56	-1.7
2,295,126	+		DZA65_RS10845	0.56	-0.6
2,295,126	+		DZA65_RS10845	0.56	-0.1
2,295,127	-		DZA65_RS10845	0.56	+1.7
2,295,127	-		DZA65_RS10845	0.56	+0.1
2,295,127	-				+0.4
2,295,203	+		DZA65_RS10845	0.59	-0.5
2,295,203	+		DZA65_RS10845	0.59	+1.6
2,295,204	-		DZA65_RS10845	0.59	+1.3
2,295,234	+		DZA65_RS10845	0.60	+1.3
2,295,234	+		DZA65_RS10845	0.60	+0.1
2,295,235	-		DZA65_RS10845	0.60	+0.4
2,295,235	-		DZA65_RS10845	0.60	+0.1
2,295,235	-		DZA65_RS10845	0.60	-1.1
2,295,287	+		DZA65_RS10845	0.62	-1.5
2,295,287	+		DZA65_RS10845	0.62	+0.8
2,295,288	-		DZA65_RS10845	0.62	-0.5
2,295,462	+		DZA65_RS10845	0.68	-2.0
2,295,463	-		DZA65_RS10845	0.68	-0.4
2,295,473	-		DZA65_RS10845	0.69	-2.9
2,295,542	+		DZA65_RS10845	0.71	-0.9
2,295,542	+		DZA65_RS10845	0.71	+1.1
2,295,542	+		DZA65_RS10845	0.71	+0.4
2,295,542	+		DZA65_RS10845	0.71	-1.7
2,295,543	-		DZA65_RS10845	0.71	+0.1
2,295,543	-		DZA65_RS10845	0.71	+0.5
2,295,543	-		DZA65_RS10845	0.71	-0.9
2,295,543	-		DZA65_RS10845	0.71	-0.2
2,295,543	-		DZA65_RS10845	0.71	+0.4
2,295,543	-		DZA65_RS10845	0.71	-0.7
2,295,586	-		DZA65_RS10845	0.73	+1.5
2,295,721	+		DZA65_RS10845	0.78	-0.1
2,295,722	-		DZA65_RS10845	0.78	+0.1
2,295,759	+		DZA65_RS10845	0.79	-0.9
2,295,760	-		DZA65_RS10845	0.79	-0.6
2,295,859	+		DZA65_RS10845	0.83	-0.9
2,295,860	-		DZA65_RS10845	0.83	-0.6
2,295,860	-		DZA65_RS10845	0.83	-1.3
2,295,915	+		DZA65_RS10845	0.85	-2.3
2,295,915	+		DZA65_RS10845	0.85	-1.1
2,295,916	-		DZA65_RS10845	0.85	+0.1
2,295,916	-		DZA65_RS10845	0.85	+0.5
2,295,918	+		DZA65_RS10845	0.85	+0.4
2,295,919	-		DZA65_RS10845	0.85	-0.2
2,296,008	+		DZA65_RS10845	0.89	-0.3
2,296,039	-		DZA65_RS10845	0.90	+0.3
2,296,039	-		DZA65_RS10845	0.90	-0.3
2,296,039	-		DZA65_RS10845	0.90	-0.4
2,296,039	-		DZA65_RS10845	0.90	+0.6
2,296,054	+				+2.1
2,296,079	+				+0.1
2,296,079	+				-0.5
2,296,079	+				+0.9
2,296,080	-				-1.8
2,296,088	+				+0.3
2,296,088	+				-1.8
2,296,088	+				-3.2
2,296,088	+				+0.1
2,296,088	+				-0.2
2,296,088	+				-0.1
2,296,088	+				+1.7
2,296,088	+				+0.9
2,296,088	+				+0.1
2,296,088	+				+1.1
2,296,088	+				+1.7
2,296,088	+				+0.3
2,296,089	-				+1.7
2,296,089	-				-0.8
2,296,089	-				+0.6
2,296,089	-				+0.5
2,296,089	-				+0.5
2,296,089	-				-2.1
2,296,089	-				+0.8
2,296,089	-				+0.9
2,296,089	-				-1.8
2,296,089	-				+1.0
2,296,089	-				+0.2
2,296,089	-				-0.1
2,296,094	+				-2.3
2,296,094	+				-0.9
2,296,094	+				+0.1
2,296,177	+				+0.2
2,296,178	-				-0.0
2,296,178	-				+0.3
2,296,179	+				-0.2
2,296,180	-				-0.7
2,296,291	-				-0.9
2,296,309	+				+0.4
2,296,317	+				-0.7
2,296,318	-				+1.4
2,296,330	+				+0.9
2,296,330	+				-1.2
2,296,330	+				-0.2
2,296,331	-				+0.7
2,296,336	+				-1.5
2,296,377	-				-1.2
2,296,378	+				-2.6
2,296,378	+				+0.4
2,296,379	-				+0.0
2,296,379	-				+0.1
2,296,379	-				-0.2
2,296,379	-				-0.2
2,296,379	-				+0.1
2,296,382	+				+0.9
2,296,382	+				+0.9
2,296,383	-				+0.5
2,296,383	-				+1.1
2,296,385	+				+0.7
2,296,386	-				-0.3
2,296,386	-				+0.2
2,296,386	-				+0.7
2,296,467	+				+0.9
2,296,498	+				-0.6
2,296,498	+				-0.4
2,296,550	+				+0.3
2,296,648	+				+0.4
2,296,690	+				+0.3
2,296,691	-				+0.3
2,296,693	+				-0.7
2,296,694	-				+0.1
2,296,694	-				-0.9
2,296,705	+				-0.7
2,296,706	-				-0.5
2,296,746	-				+0.1
2,296,746	-				+1.2
2,296,749	+				-1.2
2,296,782	+				+1.9
2,296,782	+				-0.7
2,296,782	+				+1.3
2,296,787	+				+1.0
2,296,788	-				+0.7
2,296,788	-				+1.3
2,296,792	+				-2.2
2,296,793	-				-1.5
2,296,793	-				-1.3
2,296,821	+				+1.7
2,296,895	+				+0.7
2,296,951	+		DZA65_RS10850	0.13	+0.1
2,296,952	-		DZA65_RS10850	0.13	-0.2
2,296,952	-		DZA65_RS10850	0.13	-1.9
2,296,952	-		DZA65_RS10850	0.13	-0.9
2,296,960	+		DZA65_RS10850	0.15	-0.0
2,296,961	-		DZA65_RS10850	0.15	+0.1
2,296,961	-		DZA65_RS10850	0.15	-2.2
2,296,973	+		DZA65_RS10850	0.17	-1.0
2,297,003	-		DZA65_RS10850	0.21	+1.3
2,297,127	+		DZA65_RS10850	0.41	+0.6
2,297,128	-		DZA65_RS10850	0.41	-0.0
2,297,137	+		DZA65_RS10850	0.42	+2.0
2,297,137	+		DZA65_RS10850	0.42	+0.1
2,297,137	+		DZA65_RS10850	0.42	+1.2
2,297,137	+		DZA65_RS10850	0.42	-3.1
2,297,138	-		DZA65_RS10850	0.42	-0.2
2,297,138	-		DZA65_RS10850	0.42	+0.5
2,297,171	-		DZA65_RS10850	0.47	-0.1
2,297,171	-		DZA65_RS10850	0.47	+0.9
2,297,171	-		DZA65_RS10850	0.47	+0.1
2,297,171	-		DZA65_RS10850	0.47	+1.3
2,297,171	-		DZA65_RS10850	0.47	+1.0