Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10395

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,196,046	-		DZA65_RS10385	0.90	+0.6
2,196,091	+				+0.7
2,196,110	+				+0.6
2,196,110	+				+0.7
2,196,111	-				-0.9
2,196,111	-				-1.4
2,196,111	-				+0.7
2,196,111	-				+0.0
2,196,226	+		DZA65_RS10390	0.30	-1.5
2,196,226	+		DZA65_RS10390	0.30	-0.9
2,196,226	+		DZA65_RS10390	0.30	+0.1
2,196,226	+		DZA65_RS10390	0.30	-1.4
2,196,227	-		DZA65_RS10390	0.30	-0.5
2,196,227	-		DZA65_RS10390	0.30	+0.7
2,196,227	-		DZA65_RS10390	0.30	-0.6
2,196,227	-		DZA65_RS10390	0.30	-1.4
2,196,477	+		DZA65_RS10390	0.83	-0.2
2,196,478	-		DZA65_RS10390	0.83	+0.3
2,196,478	-		DZA65_RS10390	0.83	-0.2
2,196,509	+				+0.1
2,196,510	-				-0.8
2,196,711	+				+0.6
2,196,711	+		DZA65_RS22870	0.89	+2.1
2,196,711	+		DZA65_RS22870	0.89	-1.9
2,196,711	+		DZA65_RS22870	0.89	-0.6
2,196,711	+		DZA65_RS22870	0.89	+1.1
2,196,712	-		DZA65_RS22870	0.89	-0.4
2,196,712	-		DZA65_RS22870	0.89	-0.9
2,196,712	-		DZA65_RS22870	0.89	-0.9
2,196,712	-		DZA65_RS22870	0.89	+0.4
2,196,727	+				-0.3
2,196,739	-				-0.5
2,196,872	-				-0.1
2,196,964	+		DZA65_RS10395	0.16	-0.1
2,196,964	+		DZA65_RS10395	0.16	-0.4
2,196,965	-		DZA65_RS10395	0.16	+1.1
2,196,965	-		DZA65_RS10395	0.16	-1.4
2,197,060	-		DZA65_RS10395	0.31	+0.5
2,197,092	-		DZA65_RS10395	0.36	-0.9
2,197,126	+		DZA65_RS10395	0.41	+3.0
2,197,126	+		DZA65_RS10395	0.41	-0.6
2,197,126	+		DZA65_RS10395	0.41	+0.4
2,197,127	-		DZA65_RS10395	0.41	-0.9
2,197,132	+		DZA65_RS10395	0.42	-1.9
2,197,132	+		DZA65_RS10395	0.42	-1.9
2,197,133	-		DZA65_RS10395	0.42	+3.1
2,197,133	-		DZA65_RS10395	0.42	-1.3
2,197,143	+		DZA65_RS10395	0.43	+1.3
2,197,143	+		DZA65_RS10395	0.43	+0.3
2,197,159	+		DZA65_RS10395	0.46	+0.7
2,197,159	+		DZA65_RS10395	0.46	+0.5
2,197,160	-		DZA65_RS10395	0.46	+1.2
2,197,160	-		DZA65_RS10395	0.46	-2.5
2,197,160	-		DZA65_RS10395	0.46	-2.4
2,197,160	-		DZA65_RS10395	0.46	-1.1
2,197,171	+		DZA65_RS10395	0.48	-0.9
2,197,171	+		DZA65_RS10395	0.48	-0.9
2,197,172	-		DZA65_RS10395	0.48	-0.2
2,197,172	-		DZA65_RS10395	0.48	-0.4
2,197,225	+		DZA65_RS10395	0.56	+1.5
2,197,225	+		DZA65_RS10395	0.56	+0.4
2,197,225	+		DZA65_RS10395	0.56	+0.9
2,197,225	+		DZA65_RS10395	0.56	-0.6
2,197,225	+		DZA65_RS10395	0.56	+0.7
2,197,225	+		DZA65_RS10395	0.56	-0.9
2,197,225	+		DZA65_RS10395	0.56	+0.4
2,197,226	-		DZA65_RS10395	0.56	-0.9
2,197,226	-		DZA65_RS10395	0.56	+1.1
2,197,227	+		DZA65_RS10395	0.56	+0.5
2,197,227	+		DZA65_RS10395	0.56	+1.5
2,197,227	+		DZA65_RS10395	0.56	+1.5
2,197,228	-		DZA65_RS10395	0.56	+0.4
2,197,228	-		DZA65_RS10395	0.56	+0.6
2,197,228	-		DZA65_RS10395	0.56	-0.1
2,197,288	+		DZA65_RS10395	0.65	+1.3
2,197,289	-		DZA65_RS10395	0.65	+0.7
2,197,289	-		DZA65_RS10395	0.65	+0.1
2,197,399	+		DZA65_RS10395	0.82	-1.9
2,197,400	-		DZA65_RS10395	0.82	-0.3
2,197,417	+		DZA65_RS10395	0.85	-0.3
2,197,417	+		DZA65_RS10395	0.85	+0.8
2,197,417	+		DZA65_RS10395	0.85	-1.9
2,197,418	-		DZA65_RS10395	0.85	-1.0
2,197,418	-		DZA65_RS10395	0.85	-0.4
2,197,418	-		DZA65_RS10395	0.85	-0.5
2,197,418	-		DZA65_RS10395	0.85	-0.2
2,197,450	-		DZA65_RS10395	0.90	+0.8
2,197,475	+				+0.1
2,197,475	+				-0.3
2,197,551	+				+0.1
2,197,551	+				-0.2
2,197,551	+				-0.3
2,197,552	-				-0.0
2,197,612	+				+0.6
2,197,612	+				-0.7
2,197,613	-				-1.7
2,197,613	-				+1.1
2,197,743	+		DZA65_RS10400	0.13	+0.5
2,197,757	+		DZA65_RS10400	0.14	+0.7
2,197,757	+		DZA65_RS10400	0.14	+0.6
2,197,757	+		DZA65_RS10400	0.14	-1.3
2,197,758	-		DZA65_RS10400	0.14	-1.0
2,197,871	+		DZA65_RS10400	0.20	+0.5
2,197,872	-		DZA65_RS10400	0.20	-0.9
2,197,893	-		DZA65_RS10400	0.21	+0.1
2,197,893	-		DZA65_RS10400	0.21	+0.9
2,197,932	+		DZA65_RS10400	0.23	-0.4
2,197,932	+				+1.9
2,197,932	+		DZA65_RS10400	0.23	-1.0
2,197,933	-		DZA65_RS10400	0.23	-0.6
2,197,989	+		DZA65_RS10400	0.27	-0.2
2,197,989	+		DZA65_RS10400	0.27	-0.2
2,197,989	+		DZA65_RS10400	0.27	-1.3
2,197,989	+		DZA65_RS10400	0.27	-0.9
2,197,989	+		DZA65_RS10400	0.27	-1.3
2,197,990	-		DZA65_RS10400	0.27	-0.3
2,197,990	-		DZA65_RS10400	0.27	-0.6
2,197,992	+		DZA65_RS10400	0.27	-0.4
2,197,992	+		DZA65_RS10400	0.27	+1.0
2,197,992	+		DZA65_RS10400	0.27	-0.6
2,197,992	+		DZA65_RS10400	0.27	+0.5
2,197,992	+		DZA65_RS10400	0.27	-0.4
2,197,992	+		DZA65_RS10400	0.27	+0.1
2,197,992	+				+2.7
2,197,992	+		DZA65_RS10400	0.27	-0.8
2,197,993	-		DZA65_RS10400	0.27	+0.4
2,197,993	-		DZA65_RS10400	0.27	+1.3
2,197,997	+		DZA65_RS10400	0.27	-0.6
2,198,118	+		DZA65_RS10400	0.34	-1.7
2,198,119	-		DZA65_RS10400	0.34	+1.5
2,198,119	-		DZA65_RS10400	0.34	+2.3
2,198,133	+		DZA65_RS10400	0.35	+0.7
2,198,134	-		DZA65_RS10400	0.35	+0.7
2,198,134	-		DZA65_RS10400	0.35	+0.1
2,198,439	+		DZA65_RS10400	0.52	-0.4
2,198,439	+		DZA65_RS10400	0.52	-1.7
2,198,439	+		DZA65_RS10400	0.52	+0.9
2,198,439	+		DZA65_RS10400	0.52	+0.1
2,198,439	+		DZA65_RS10400	0.52	+0.8
2,198,439	+		DZA65_RS10400	0.52	+0.4
2,198,439	+		DZA65_RS10400	0.52	-0.9
2,198,439	+		DZA65_RS10400	0.52	+0.6
2,198,440	-		DZA65_RS10400	0.52	+0.3
2,198,440	-		DZA65_RS10400	0.52	-0.6
2,198,440	-		DZA65_RS10400	0.52	-1.4
2,198,481	+		DZA65_RS10400	0.54	-0.7
2,198,481	+		DZA65_RS10400	0.54	-1.2
2,198,482	-		DZA65_RS10400	0.54	-0.1
2,198,482	-		DZA65_RS10400	0.54	+0.3
2,198,482	-		DZA65_RS10400	0.54	+2.0
2,198,482	-		DZA65_RS10400	0.54	-0.2