Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10280

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,175,643	+				-0.2
2,175,644	-				+1.1
2,175,659	-				-0.1
2,175,706	-				-0.8
2,175,712	-				+0.2
2,175,712	-				-1.4
2,175,741	-				+1.7
2,175,742	+				-0.5
2,175,742	+				+0.7
2,175,746	+				-0.3
2,175,747	-				-0.4
2,175,835	-				+1.3
2,175,837	+				-1.5
2,175,838	-				+0.6
2,175,846	+				-0.4
2,175,900	+				-0.6
2,175,900	+				+0.3
2,175,900	+				+0.7
2,175,900	+				-1.4
2,175,900	+				+1.9
2,175,901	-				-0.4
2,175,901	-				-1.8
2,175,922	+		DZA65_RS10275	0.13	+0.8
2,176,065	+		DZA65_RS10275	0.36	-0.8
2,176,066	-		DZA65_RS10275	0.36	-0.2
2,176,066	-		DZA65_RS10275	0.36	-0.3
2,176,098	+		DZA65_RS10275	0.41	-0.2
2,176,098	+		DZA65_RS10275	0.41	-0.5
2,176,098	+		DZA65_RS10275	0.41	-0.7
2,176,098	+		DZA65_RS10275	0.41	-3.3
2,176,098	+		DZA65_RS10275	0.41	-1.7
2,176,098	+		DZA65_RS10275	0.41	+0.6
2,176,098	+		DZA65_RS10275	0.41	-1.6
2,176,098	+		DZA65_RS10275	0.41	-0.8
2,176,098	+		DZA65_RS10275	0.41	-0.0
2,176,098	+				+1.2
2,176,098	+		DZA65_RS10275	0.41	-0.6
2,176,098	+		DZA65_RS10275	0.41	-0.2
2,176,098	+		DZA65_RS10275	0.41	+1.2
2,176,098	+		DZA65_RS10275	0.41	+0.8
2,176,098	+		DZA65_RS10275	0.41	+0.7
2,176,098	+		DZA65_RS10275	0.41	+1.3
2,176,098	+		DZA65_RS10275	0.41	+0.1
2,176,098	+		DZA65_RS10275	0.41	-0.8
2,176,099	-		DZA65_RS10275	0.41	-0.3
2,176,099	-		DZA65_RS10275	0.41	+0.0
2,176,099	-		DZA65_RS10275	0.41	-0.1
2,176,099	-		DZA65_RS10275	0.41	+0.5
2,176,099	-		DZA65_RS10275	0.41	-1.0
2,176,099	-		DZA65_RS10275	0.41	-0.0
2,176,099	-		DZA65_RS10275	0.41	-0.2
2,176,099	-		DZA65_RS10275	0.41	-0.7
2,176,099	-		DZA65_RS10275	0.41	-0.4
2,176,099	-		DZA65_RS10275	0.41	+0.6
2,176,099	-		DZA65_RS10275	0.41	-2.7
2,176,099	-		DZA65_RS10275	0.41	-0.2
2,176,099	-		DZA65_RS10275	0.41	+0.4
2,176,293	+		DZA65_RS10275	0.73	+0.3
2,176,294	-		DZA65_RS10275	0.73	+0.7
2,176,294	-		DZA65_RS10275	0.73	+1.6
2,176,294	-		DZA65_RS10275	0.73	-1.2
2,176,326	+		DZA65_RS10275	0.78	-0.4
2,176,326	+		DZA65_RS10275	0.78	+1.5
2,176,326	+		DZA65_RS10275	0.78	-1.2
2,176,326	+		DZA65_RS10275	0.78	+0.2
2,176,327	-				+0.2
2,176,327	-		DZA65_RS10275	0.78	+0.5
2,176,327	-		DZA65_RS10275	0.78	+0.2
2,176,398	+				-3.0
2,176,399	-				-0.2
2,176,415	+				+1.1
2,176,415	+				+0.6
2,176,415	+				-0.4
2,176,504	-				-1.2
2,176,533	-				-1.8
2,176,568	+				+1.3
2,176,568	+				-0.8
2,176,568	+				-2.0
2,176,568	+				+0.8
2,176,569	-				-0.2
2,176,569	-				+1.6
2,176,569	-				-1.6
2,176,569	-				-0.0
2,176,569	-				-0.3
2,176,569	-				+0.6
2,176,570	+				+1.5
2,176,570	+				-3.2
2,176,571	-				+0.2
2,176,610	-				+1.6
2,176,744	+		DZA65_RS10280	0.13	-1.0
2,176,744	+		DZA65_RS10280	0.13	-0.5
2,176,924	+		DZA65_RS10280	0.37	-0.7
2,176,925	-		DZA65_RS10280	0.37	-0.8
2,176,976	-		DZA65_RS10280	0.44	-1.2
2,176,976	-		DZA65_RS10280	0.44	+0.3
2,177,029	-		DZA65_RS10280	0.51	-0.8
2,177,029	-		DZA65_RS10280	0.51	+0.4
2,177,055	+		DZA65_RS10280	0.54	+0.0
2,177,055	+		DZA65_RS10280	0.54	+0.2
2,177,055	+		DZA65_RS10280	0.54	+1.2
2,177,055	+		DZA65_RS10280	0.54	-1.8
2,177,055	+		DZA65_RS10280	0.54	-1.8
2,177,056	-		DZA65_RS10280	0.55	-0.3
2,177,056	-		DZA65_RS10280	0.55	-0.0
2,177,056	-		DZA65_RS10280	0.55	-0.4
2,177,056	-		DZA65_RS10280	0.55	+0.4
2,177,072	+		DZA65_RS10280	0.57	-0.7
2,177,072	+		DZA65_RS10280	0.57	-0.1
2,177,072	+		DZA65_RS10280	0.57	+0.2
2,177,072	+		DZA65_RS10280	0.57	+2.2
2,177,072	+		DZA65_RS10280	0.57	+1.0
2,177,207	+		DZA65_RS10280	0.75	+0.2
2,177,207	+		DZA65_RS10280	0.75	+0.6
2,177,207	+		DZA65_RS10280	0.75	+0.2
2,177,207	+		DZA65_RS10280	0.75	+0.2
2,177,207	+		DZA65_RS10280	0.75	-0.3
2,177,207	+		DZA65_RS10280	0.75	+0.7
2,177,207	+		DZA65_RS10280	0.75	-0.7
2,177,207	+		DZA65_RS10280	0.75	-0.8
2,177,207	+		DZA65_RS10280	0.75	-1.8
2,177,207	+		DZA65_RS10280	0.75	+0.2
2,177,208	-		DZA65_RS10280	0.75	-0.2
2,177,208	-		DZA65_RS10280	0.75	-0.3
2,177,208	-		DZA65_RS10280	0.75	-1.7
2,177,208	-		DZA65_RS10280	0.75	+1.4
2,177,208	-		DZA65_RS10280	0.75	-1.0
2,177,208	-		DZA65_RS10280	0.75	+1.0
2,177,208	-		DZA65_RS10280	0.75	-0.5
2,177,208	-		DZA65_RS10280	0.75	-1.3
2,177,208	-		DZA65_RS10280	0.75	-1.8
2,177,208	-		DZA65_RS10280	0.75	+1.6
2,177,209	+		DZA65_RS10280	0.75	-0.1
2,177,209	+		DZA65_RS10280	0.75	+0.6
2,177,210	-		DZA65_RS10280	0.75	-1.3
2,177,304	+		DZA65_RS10280	0.87	+1.2
2,177,304	+		DZA65_RS10280	0.87	+0.8
2,177,304	+		DZA65_RS10280	0.87	+0.2
2,177,304	+		DZA65_RS10280	0.87	-0.6
2,177,305	-		DZA65_RS10280	0.88	-0.2
2,177,305	-		DZA65_RS10280	0.88	-0.1
2,177,305	-		DZA65_RS10280	0.88	-0.2
2,177,308	+		DZA65_RS10280	0.88	+0.6
2,177,308	+		DZA65_RS10280	0.88	+0.8
2,177,308	+		DZA65_RS10280	0.88	-1.1
2,177,309	-		DZA65_RS10280	0.88	-1.9
2,177,309	-		DZA65_RS10280	0.88	+1.2
2,177,396	+				+0.6
2,177,397	-				-0.1
2,177,397	-				-1.3
2,177,408	+				-2.0
2,177,408	+				-0.4
2,177,408	+				-1.3
2,177,408	+				-0.7
2,177,409	-				-0.7
2,177,409	-				-0.2
2,177,415	+				-1.7
2,177,415	+				+1.3
2,177,415	+				+0.6
2,177,415	+				-0.2
2,177,415	+				+1.7
2,177,415	+				+0.2
2,177,416	-				-1.8
2,177,416	-				+0.5
2,177,416	-				+0.5
2,177,416	-				+3.9
2,177,416	-				-0.2
2,177,416	-				+0.2
2,177,416	-				-0.0
2,177,416	-				+0.7
2,177,549	+				+0.2
2,177,549	+		DZA65_RS10285	0.15	-0.4
2,177,818	-				+1.5
2,177,858	-		DZA65_RS10285	0.48	-0.7
2,178,053	-		DZA65_RS10285	0.68	+0.3
2,178,068	+		DZA65_RS10285	0.70	+0.7
2,178,069	-		DZA65_RS10285	0.70	-1.3
2,178,069	-		DZA65_RS10285	0.70	+0.6
2,178,296	+				+0.4
2,178,296	+				+0.9
2,178,296	+				-0.1
2,178,296	+				-0.1
2,178,297	-				+0.2
2,178,297	-				-0.3
2,178,297	-				-2.7
2,178,297	-				+0.3
2,178,346	+				-1.2
2,178,347	-				-0.2
2,178,347	-				+0.5
2,178,357	+				+0.4