Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10130

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,143,878	-		DZA65_RS10125	0.15	-0.3
2,143,878	-		DZA65_RS10125	0.15	-1.0
2,143,878	-		DZA65_RS10125	0.15	+0.9
2,143,878	-		DZA65_RS10125	0.15	-0.2
2,143,878	-		DZA65_RS10125	0.15	-1.0
2,143,914	+		DZA65_RS10125	0.19	-0.4
2,143,943	+		DZA65_RS10125	0.22	+0.6
2,143,943	+		DZA65_RS10125	0.22	-0.5
2,143,944	-		DZA65_RS10125	0.22	+1.3
2,143,944	-		DZA65_RS10125	0.22	-0.5
2,143,944	-		DZA65_RS10125	0.22	+3.3
2,144,052	-		DZA65_RS10125	0.34	-1.4
2,144,105	+		DZA65_RS10125	0.40	-3.2
2,144,106	-		DZA65_RS10125	0.40	-0.7
2,144,109	+		DZA65_RS10125	0.40	+0.7
2,144,115	+		DZA65_RS10125	0.41	+0.6
2,144,242	-		DZA65_RS10125	0.55	-0.8
2,144,356	+		DZA65_RS10125	0.67	-1.4
2,144,357	-		DZA65_RS10125	0.67	-0.1
2,144,371	+		DZA65_RS10125	0.69	+0.6
2,144,372	-		DZA65_RS10125	0.69	-1.1
2,144,415	-		DZA65_RS10125	0.74	-0.5
2,144,432	+		DZA65_RS10125	0.76	-1.4
2,144,432	+		DZA65_RS10125	0.76	+0.6
2,144,433	-		DZA65_RS10125	0.76	-0.5
2,144,462	+		DZA65_RS10125	0.79	+0.4
2,144,462	+		DZA65_RS10125	0.79	+1.4
2,144,463	-		DZA65_RS10125	0.79	-1.6
2,144,463	-		DZA65_RS10125	0.79	+0.2
2,144,463	-		DZA65_RS10125	0.79	-0.9
2,144,481	-		DZA65_RS10125	0.81	-0.9
2,144,481	-		DZA65_RS10125	0.81	+0.2
2,144,481	-		DZA65_RS10125	0.81	-1.0
2,144,481	-		DZA65_RS10125	0.81	+0.7
2,144,519	+		DZA65_RS10125	0.85	+0.3
2,144,549	+		DZA65_RS10125	0.89	-2.8
2,144,550	-		DZA65_RS10125	0.89	-0.1
2,144,583	+				-0.8
2,144,661	+				-0.8
2,144,661	+				+0.2
2,144,661	+				-1.7
2,144,662	-				+0.6
2,144,662	-				-1.0
2,144,664	+				+0.4
2,144,748	+				+1.2
2,144,748	+				+1.0
2,144,748	+				+0.6
2,144,749	-				-0.6
2,144,749	-				-1.3
2,144,749	-				-0.6
2,144,749	-				-0.4
2,144,749	-				+0.2
2,144,757	+				+0.9
2,144,758	-				+0.6
2,144,758	-				-0.8
2,144,809	-				+0.2
2,144,809	-				+0.2
2,144,821	+				-0.7
2,144,822	-				-0.2
2,144,834	+				-0.8
2,144,834	+				-0.6
2,144,835	-				+0.2
2,144,855	+				+1.3
2,144,856	-				+0.7
2,144,885	+				+0.6
2,144,885	+				+0.0
2,144,885	+				-1.8
2,144,885	+				-0.3
2,144,885	+				+0.0
2,144,886	-				+0.4
2,144,886	-				-0.5
2,144,886	-				+0.0
2,144,886	-				+1.0
2,144,886	-				+0.6
2,144,886	-				-1.3
2,144,886	-				-0.8
2,144,892	+				+1.0
2,144,898	+				+1.2
2,144,899	-				+0.3
2,144,899	-				+1.7
2,144,899	-				-0.4
2,144,911	+				-0.4
2,144,923	-				+1.7
2,144,926	-				+0.2
2,144,926	-				-0.3
2,144,935	-				+0.6
2,144,935	-				+1.2
2,144,935	-				+0.2
2,144,935	-				-0.1
2,144,978	+		DZA65_RS10130	0.13	-0.2
2,144,978	+		DZA65_RS10130	0.13	+0.2
2,144,978	+		DZA65_RS10130	0.13	-2.2
2,144,979	-		DZA65_RS10130	0.13	-1.2
2,144,979	-		DZA65_RS10130	0.13	+0.7
2,144,979	-		DZA65_RS10130	0.13	+0.6
2,144,979	-		DZA65_RS10130	0.13	+0.3
2,144,979	-		DZA65_RS10130	0.13	+1.2
2,144,987	-		DZA65_RS10130	0.14	+0.6
2,144,987	-		DZA65_RS10130	0.14	+0.7
2,144,987	-		DZA65_RS10130	0.14	-0.4
2,144,987	-		DZA65_RS10130	0.14	+0.2
2,144,987	-		DZA65_RS10130	0.14	+0.3
2,144,987	-		DZA65_RS10130	0.14	+1.3
2,145,220	+		DZA65_RS10130	0.45	-1.8
2,145,220	+		DZA65_RS10130	0.45	+1.7
2,145,220	+		DZA65_RS10130	0.45	-0.1
2,145,221	-		DZA65_RS10130	0.46	+0.8
2,145,221	-		DZA65_RS10130	0.46	+0.1
2,145,221	-		DZA65_RS10130	0.46	+0.2
2,145,221	-		DZA65_RS10130	0.46	+0.7
2,145,221	-		DZA65_RS10130	0.46	-3.8
2,145,221	-		DZA65_RS10130	0.46	+0.4
2,145,221	-		DZA65_RS10130	0.46	-0.2
2,145,221	-		DZA65_RS10130	0.46	+0.3
2,145,221	-		DZA65_RS10130	0.46	+0.7
2,145,221	-		DZA65_RS10130	0.46	-1.7
2,145,221	-		DZA65_RS10130	0.46	+0.4
2,145,221	-		DZA65_RS10130	0.46	-1.4
2,145,223	+		DZA65_RS10130	0.46	+0.2
2,145,223	+		DZA65_RS10130	0.46	+1.3
2,145,223	+		DZA65_RS10130	0.46	-0.1
2,145,223	+		DZA65_RS10130	0.46	-0.3
2,145,223	+		DZA65_RS10130	0.46	-0.8
2,145,224	-		DZA65_RS10130	0.46	-0.3
2,145,224	-		DZA65_RS10130	0.46	-0.8
2,145,224	-		DZA65_RS10130	0.46	+1.7
2,145,224	-		DZA65_RS10130	0.46	+0.2
2,145,224	-		DZA65_RS10130	0.46	+0.9
2,145,225	+		DZA65_RS10130	0.46	+1.6
2,145,355	+		DZA65_RS10130	0.63	-1.6
2,145,355	+		DZA65_RS10130	0.63	-0.7
2,145,355	+		DZA65_RS10130	0.63	+0.3
2,145,355	+		DZA65_RS10130	0.63	-0.1
2,145,355	+		DZA65_RS10130	0.63	+0.6
2,145,356	-		DZA65_RS10130	0.63	+1.5
2,145,356	-		DZA65_RS10130	0.63	-0.2
2,145,356	-		DZA65_RS10130	0.63	-0.0
2,145,356	-		DZA65_RS10130	0.63	-0.2
2,145,356	-		DZA65_RS10130	0.63	+1.7
2,145,419	+		DZA65_RS10130	0.72	+0.8
2,145,419	+		DZA65_RS10130	0.72	+0.7
2,145,419	+		DZA65_RS10130	0.72	-1.2
2,145,419	+		DZA65_RS10130	0.72	-0.3
2,145,420	-		DZA65_RS10130	0.72	-1.1
2,145,420	-		DZA65_RS10130	0.72	+0.9
2,145,486	+		DZA65_RS10130	0.81	+2.5
2,145,569	+				-1.3
2,145,569	+				+0.8
2,145,569	+				+1.6
2,145,569	+				+1.2
2,145,570	-				+1.2
2,145,570	-				+1.2
2,145,675	-				+1.7
2,145,675	-				+0.7
2,145,675	-				+0.3
2,145,676	+				+1.5
2,145,676	+				-0.6
2,145,676	+				-2.3
2,145,676	+				+1.0
2,145,676	+				+0.2
2,145,677	-				-1.4
2,145,677	-				-0.3
2,145,682	+				+0.0
2,145,682	+				-0.6
2,145,683	-				+1.5
2,145,683	-				+1.3
2,145,683	-				+0.2
2,145,724	+				-1.3
2,145,738	+				+1.0
2,145,750	+				+0.2
2,145,751	-				+0.1
2,145,751	-				-1.0
2,145,779	-				+1.3
2,145,779	-				-0.5
2,145,781	-				-2.2
2,145,781	-				-2.4
2,145,781	-				+0.9
2,145,796	-				-0.1
2,145,796	-				-0.1
2,145,796	-				-0.7
2,145,835	+				+1.4
2,146,442	+				-0.7
2,146,450	+				-0.4
2,146,450	+				+0.2
2,146,483	+				+1.4
2,146,483	+				+0.3
2,146,483	+				-1.4
2,146,483	+				-0.1
2,146,483	+				-1.4
2,146,483	+				+0.5
2,146,488	+				-0.8
2,146,502	+				+0.2
2,146,510	+				-0.5
2,146,510	+				-0.7
2,146,511	-				-0.6
2,146,511	-				-3.4
2,146,516	+				+1.5
2,146,516	+				+1.6
2,146,524	+				+0.6
2,146,578	+				+0.9
2,146,578	+				+1.5
2,146,578	+				-1.4
2,146,578	+				-0.1
2,146,578	+				+1.3
2,146,578	+				+0.2
2,146,578	+				+1.2
2,146,578	+				-1.4
2,146,578	+				-2.4
2,146,578	+				-0.8
2,146,578	+				+0.3
2,146,578	+				+0.2
2,146,579	-				-1.1
2,146,579	-				+0.9
2,146,582	+				+1.0
2,146,602	+				+0.3
2,146,602	+				+0.2
2,146,603	-				+3.2
2,146,612	+				+1.3
2,146,612	+				-0.2
2,146,612	+				-1.8
2,146,612	+				-0.2
2,146,612	+				-0.7
2,146,612	+				-0.4
2,146,613	-				-1.0
2,146,613	-				-2.2
2,146,613	-				+0.4
2,146,613	-				-0.2
2,146,613	-				+1.0