Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09540

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,005,036	+		DZA65_RS09535	0.59	-0.4
2,005,090	+		DZA65_RS09535	0.62	+1.0
2,005,099	+		DZA65_RS09535	0.63	-0.4
2,005,256	+		DZA65_RS09535	0.71	+0.2
2,005,256	+		DZA65_RS09535	0.71	+0.9
2,005,257	-		DZA65_RS09535	0.72	-0.8
2,005,257	-		DZA65_RS09535	0.72	-0.6
2,005,303	+		DZA65_RS09535	0.74	+0.3
2,005,303	+		DZA65_RS09535	0.74	-1.0
2,005,304	-				+0.2
2,005,304	-		DZA65_RS09535	0.74	+2.0
2,005,304	-		DZA65_RS09535	0.74	-0.3
2,005,304	-		DZA65_RS09535	0.74	-0.2
2,005,306	+		DZA65_RS09535	0.74	-1.0
2,005,306	+				-2.4
2,005,307	-		DZA65_RS09535	0.74	+0.6
2,005,343	+		DZA65_RS09535	0.76	-0.3
2,005,343	+		DZA65_RS09535	0.76	-0.8
2,005,343	+				+0.2
2,005,343	+		DZA65_RS09535	0.76	-0.3
2,005,343	+		DZA65_RS09535	0.76	-0.5
2,005,343	+		DZA65_RS09535	0.76	-0.5
2,005,343	+		DZA65_RS09535	0.76	+0.3
2,005,343	+		DZA65_RS09535	0.76	+0.9
2,005,344	-		DZA65_RS09535	0.76	-0.0
2,005,344	-		DZA65_RS09535	0.76	-0.3
2,005,344	-		DZA65_RS09535	0.76	-1.6
2,005,344	-		DZA65_RS09535	0.76	+0.0
2,005,344	-		DZA65_RS09535	0.76	-0.1
2,005,344	-		DZA65_RS09535	0.76	-0.8
2,005,344	-		DZA65_RS09535	0.76	-0.5
2,005,344	-		DZA65_RS09535	0.76	-0.4
2,005,344	-		DZA65_RS09535	0.76	-1.6
2,005,352	+		DZA65_RS09535	0.77	+0.1
2,005,353	-		DZA65_RS09535	0.77	-1.4
2,005,353	-		DZA65_RS09535	0.77	-1.4
2,005,432	+		DZA65_RS09535	0.81	-1.2
2,005,433	-		DZA65_RS09535	0.81	-0.4
2,005,433	-		DZA65_RS09535	0.81	-0.8
2,005,445	-		DZA65_RS09535	0.82	-0.7
2,005,472	-		DZA65_RS09535	0.83	-2.1
2,005,472	-		DZA65_RS09535	0.83	+0.5
2,005,474	+		DZA65_RS09535	0.83	-0.8
2,005,474	+		DZA65_RS09535	0.83	-0.6
2,005,474	+		DZA65_RS09535	0.83	-0.7
2,005,475	-		DZA65_RS09535	0.84	-0.4
2,005,504	+		DZA65_RS09535	0.85	-1.5
2,005,504	+		DZA65_RS09535	0.85	-1.3
2,005,504	+		DZA65_RS09535	0.85	-1.0
2,005,505	-		DZA65_RS09535	0.85	+0.6
2,005,505	-		DZA65_RS09535	0.85	-0.5
2,005,505	-		DZA65_RS09535	0.85	-1.1
2,005,517	-		DZA65_RS09535	0.86	-0.1
2,005,690	+				+1.2
2,005,690	+				-0.0
2,005,690	+				-2.0
2,005,690	+				-0.9
2,005,690	+				-0.4
2,005,690	+				-0.2
2,005,691	-				-0.1
2,005,691	-				-1.1
2,005,691	-				-1.0
2,005,691	-				-1.3
2,005,691	-				+0.0
2,005,754	+				-1.8
2,005,767	-				-0.5
2,005,767	-				-0.6
2,005,767	-				-0.8
2,005,872	-				+0.8
2,005,887	-				-0.4
2,005,887	-				+0.2
2,005,896	+				+0.2
2,005,896	+				+0.4
2,005,896	+				+0.5
2,005,896	+				+1.2
2,005,897	-				+0.6
2,005,910	+				+0.8
2,005,910	+				-0.2
2,005,910	+				+0.4
2,005,911	-				-0.4
2,005,911	-				-0.8
2,005,911	-				-0.3
2,005,933	+				-0.4
2,005,954	-				-0.4
2,005,954	-				-0.2
2,005,956	+				-2.4
2,006,081	+		DZA65_RS09540	0.10	-0.8
2,006,082	-		DZA65_RS09540	0.10	+1.2
2,006,082	-		DZA65_RS09540	0.10	-0.0
2,006,082	-		DZA65_RS09540	0.10	-0.3
2,006,082	-		DZA65_RS09540	0.10	-0.9
2,006,085	+		DZA65_RS09540	0.11	-1.3
2,006,085	+		DZA65_RS09540	0.11	-0.8
2,006,086	-		DZA65_RS09540	0.11	+0.2
2,006,086	-		DZA65_RS09540	0.11	+0.4
2,006,153	+		DZA65_RS09540	0.23	-2.6
2,006,153	+		DZA65_RS09540	0.23	+0.5
2,006,153	+		DZA65_RS09540	0.23	-1.4
2,006,154	-		DZA65_RS09540	0.23	+0.3
2,006,154	-		DZA65_RS09540	0.23	-0.8
2,006,154	-		DZA65_RS09540	0.23	-0.2
2,006,154	-		DZA65_RS09540	0.23	+1.0
2,006,154	-		DZA65_RS09540	0.23	-0.5
2,006,154	-		DZA65_RS09540	0.23	-1.1
2,006,217	+		DZA65_RS09540	0.34	-0.9
2,006,256	-		DZA65_RS09540	0.40	-0.7
2,006,256	-		DZA65_RS09540	0.40	-3.7
2,006,256	-		DZA65_RS09540	0.40	-0.4
2,006,256	-		DZA65_RS09540	0.40	-0.8
2,006,256	-		DZA65_RS09540	0.40	-0.1
2,006,401	-		DZA65_RS09540	0.66	-1.0
2,006,449	+		DZA65_RS09540	0.74	-1.1
2,006,449	+		DZA65_RS09540	0.74	-0.8
2,006,449	+		DZA65_RS09540	0.74	+0.5
2,006,449	+		DZA65_RS09540	0.74	-0.3
2,006,450	-		DZA65_RS09540	0.74	-1.1
2,006,450	-		DZA65_RS09540	0.74	-1.4
2,006,450	-		DZA65_RS09540	0.74	-1.4
2,006,482	-		DZA65_RS09540	0.80	-1.8
2,006,494	-		DZA65_RS09540	0.82	-0.7
2,006,508	+		DZA65_RS09540	0.84	-0.6
2,006,518	-		DZA65_RS09540	0.86	-1.8
2,006,568	+				+0.3
2,006,568	+				-1.2
2,006,568	+				-0.6
2,006,568	+				-0.6
2,006,568	+				-1.4
2,006,568	+				+0.8
2,006,569	-				-3.0
2,006,569	-				-1.4
2,006,569	-				-2.4
2,006,569	-				+0.2
2,006,569	-				-1.1
2,006,569	-				-0.6
2,006,569	-				-1.1
2,006,569	-				-0.1
2,006,569	-				+0.0
2,006,570	+				+0.2
2,006,570	+				+0.6
2,006,570	+				-0.4
2,006,570	+				-0.1
2,006,570	+				-1.0
2,006,570	+				-0.1
2,006,571	-				-0.1
2,006,571	-				-0.8
2,006,571	-				-0.1
2,006,571	-				+0.7
2,006,571	-				-2.8
2,006,571	-				-1.8
2,006,605	+				+0.9
2,006,605	+				-3.3
2,006,605	+				-0.5
2,006,606	-				-0.2
2,006,606	-				-0.2
2,006,606	-				+0.4
2,006,652	-				-0.2
2,006,675	+				-0.6
2,006,675	+				+0.2
2,006,675	+				-1.0
2,006,676	-				+0.3
2,006,676	-				+0.5
2,006,682	-				+0.4
2,006,708	+				+1.0
2,006,716	+				-1.7
2,006,717	-				+0.3
2,006,717	-				+0.8
2,006,719	+				-0.5
2,006,719	+				-0.1
2,006,719	+				-0.4
2,006,720	-				+1.5
2,006,720	-				-0.4
2,006,767	+				-0.4
2,006,768	-				+1.0
2,006,768	-				+0.4
2,006,792	+				-2.5
2,006,792	+				-1.0
2,006,793	-				-0.2
2,006,814	+				-1.0
2,006,814	+				-0.5
2,006,815	-				+0.4
2,006,815	-				-0.3
2,006,815	-				+0.5
2,006,837	+				-1.1
2,006,837	+				-0.1
2,006,837	+				+1.8
2,006,837	+				-1.2
2,006,885	-				+0.7
2,006,918	+				-0.1
2,006,953	+				+1.0
2,006,953	+				-0.2
2,006,953	+				+1.2
2,006,953	+				-0.1
2,006,953	+				+0.4
2,006,954	-				-0.1
2,006,954	-				+1.2
2,006,963	+				+0.2
2,006,963	+				+1.0
2,006,963	+				-0.3
2,006,963	+				+0.6
2,006,963	+				+0.2
2,006,964	-				-0.8
2,006,964	-				-0.1
2,006,964	-				-0.1
2,006,964	-				-1.0
2,006,964	-				+0.6
2,006,966	+				+0.3
2,006,966	+				-1.8
2,006,967	-				-1.6
2,006,967	-				-0.6
2,006,967	-				+0.5
2,006,967	-				-2.0
2,006,967	-				-2.1
2,007,012	+				+0.4
2,007,012	+				-2.6
2,007,012	+				-0.2
2,007,013	-				-0.0
2,007,013	-				-0.1
2,007,014	+				-0.9
2,007,014	+				-0.5
2,007,014	+				-0.1
2,007,014	+				+1.2
2,007,014	+				+0.9
2,007,015	-				+2.2
2,007,015	-				-1.0
2,007,015	-				-1.0
2,007,028	+				+0.1
2,007,028	+				-0.0
2,007,029	-				-2.1
2,007,029	-				+0.9
2,007,029	-				+0.2
2,007,029	-				-0.2
2,007,033	+				+0.7
2,007,033	+				-0.5
2,007,034	-				+0.3
2,007,045	+				-0.5
2,007,045	+				-0.1
2,007,046	-				+0.1
2,007,046	-				+1.2
2,007,090	-				+0.2
2,007,211	-		DZA65_RS09545	0.19	+1.0
2,007,289	+		DZA65_RS09545	0.27	+1.2
2,007,290	-		DZA65_RS09545	0.27	+0.4
2,007,293	-		DZA65_RS09545	0.27	+1.2
2,007,499	+		DZA65_RS09545	0.48	-0.3
2,007,500	-		DZA65_RS09545	0.48	-0.8
2,007,539	+		DZA65_RS09545	0.52	-1.0
2,007,540	-		DZA65_RS09545	0.52	-0.3
2,007,540	-		DZA65_RS09545	0.52	+1.0