Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09490

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,994,203	+		DZA65_RS09480	0.76	+0.7
1,994,233	+		DZA65_RS09480	0.78	-0.8
1,994,236	+		DZA65_RS09480	0.78	-0.0
1,994,236	+		DZA65_RS09480	0.78	+0.6
1,994,236	+		DZA65_RS09480	0.78	-0.3
1,994,237	-		DZA65_RS09480	0.79	+1.3
1,994,237	-		DZA65_RS09480	0.79	+0.5
1,994,237	-		DZA65_RS09480	0.79	-1.2
1,994,237	-		DZA65_RS09480	0.79	-2.1
1,994,246	+		DZA65_RS09480	0.79	-0.5
1,994,348	-		DZA65_RS09480	0.88	+0.5
1,994,383	+				-0.8
1,994,383	+				-0.6
1,994,383	+				-0.3
1,994,383	+				+2.5
1,994,519	-				-0.3
1,994,529	+				-0.0
1,994,529	+				-1.0
1,994,529	+				+1.5
1,994,530	-				+0.6
1,994,531	+				+0.2
1,994,532	-				-0.1
1,994,532	-				+0.5
1,994,532	-				+0.5
1,994,598	+		DZA65_RS22850	0.22	-2.0
1,995,146	-				+0.3
1,995,146	-				+0.3
1,995,146	-				+1.3
1,995,363	+		DZA65_RS09490	0.11	-0.4
1,995,364	-		DZA65_RS09490	0.11	+0.9
1,995,432	-		DZA65_RS09490	0.15	+1.2
1,995,432	-		DZA65_RS09490	0.15	-0.3
1,995,432	-		DZA65_RS09490	0.15	-0.8
1,995,432	-		DZA65_RS09490	0.15	-1.0
1,995,435	-		DZA65_RS09490	0.15	-1.4
1,995,435	-		DZA65_RS09490	0.15	-0.3
1,995,435	-		DZA65_RS09490	0.15	+0.8
1,995,435	-		DZA65_RS09490	0.15	-0.0
1,995,435	-		DZA65_RS09490	0.15	-0.3
1,995,503	-		DZA65_RS09490	0.19	+1.1
1,995,540	+		DZA65_RS09490	0.21	-0.8
1,995,830	+		DZA65_RS09490	0.37	+0.4
1,995,830	+		DZA65_RS09490	0.37	-3.0
1,995,830	+		DZA65_RS09490	0.37	-1.4
1,995,831	-		DZA65_RS09490	0.37	-0.5
1,995,831	-		DZA65_RS09490	0.37	+0.2
1,995,831	-		DZA65_RS09490	0.37	+0.6
1,995,949	+		DZA65_RS09490	0.44	-0.2
1,995,949	+		DZA65_RS09490	0.44	+0.7
1,995,949	+		DZA65_RS09490	0.44	-0.1
1,995,950	-		DZA65_RS09490	0.44	-0.0
1,995,955	+		DZA65_RS09490	0.44	-0.5
1,996,013	+		DZA65_RS09490	0.47	+0.6
1,996,186	+		DZA65_RS09490	0.57	+1.2
1,996,281	+		DZA65_RS09490	0.62	+0.3
1,996,282	-		DZA65_RS09490	0.62	-1.4
1,996,285	-		DZA65_RS09490	0.62	-0.0
1,996,297	-		DZA65_RS09490	0.63	-0.8
1,996,341	-		DZA65_RS09490	0.65	+0.1
1,996,341	-		DZA65_RS09490	0.65	+0.6
1,996,348	+		DZA65_RS09490	0.66	-2.4
1,996,400	+		DZA65_RS09490	0.69	-0.4
1,996,400	+		DZA65_RS09490	0.69	-1.0
1,996,400	+		DZA65_RS09490	0.69	-1.1
1,996,400	+		DZA65_RS09490	0.69	+0.6
1,996,400	+		DZA65_RS09490	0.69	-0.9
1,996,400	+		DZA65_RS09490	0.69	+0.4
1,996,401	-		DZA65_RS09490	0.69	-2.4
1,996,401	-		DZA65_RS09490	0.69	-0.1
1,996,401	-		DZA65_RS09490	0.69	-0.7
1,996,401	-		DZA65_RS09490	0.69	+1.2
1,996,401	-		DZA65_RS09490	0.69	+0.0
1,996,418	+		DZA65_RS09490	0.70	-0.7
1,996,419	-		DZA65_RS09490	0.70	-1.1
1,996,419	-		DZA65_RS09490	0.70	+0.6
1,996,419	-		DZA65_RS09490	0.70	-0.8
1,996,461	+		DZA65_RS09490	0.72	+0.9
1,996,461	+		DZA65_RS09490	0.72	-0.9
1,996,462	-		DZA65_RS09490	0.72	+0.5
1,996,469	+		DZA65_RS09490	0.72	+0.1
1,996,481	+		DZA65_RS09490	0.73	-0.1
1,996,482	-		DZA65_RS09490	0.73	+1.0
1,996,482	-		DZA65_RS09490	0.73	+0.9
1,996,577	+		DZA65_RS09490	0.78	-0.2
1,996,600	-		DZA65_RS09490	0.80	+0.6
1,996,760	+		DZA65_RS09490	0.89	+0.5
1,996,760	+		DZA65_RS09490	0.89	-0.1
1,996,761	-		DZA65_RS09490	0.89	-0.2
1,996,761	-		DZA65_RS09490	0.89	+0.5
1,996,956	+				+1.4
1,996,956	+				-0.0
1,996,956	+				+1.8
1,996,956	+				+2.4
1,996,956	+				+0.3
1,996,957	-				+0.9
1,996,957	-				-1.8
1,996,957	-				-0.1
1,996,957	-				-0.1
1,996,957	-				+1.5
1,996,982	+				-0.0
1,996,997	+		DZA65_RS09495	0.13	+1.1
1,996,997	+		DZA65_RS09495	0.13	+0.8
1,997,171	+		DZA65_RS09495	0.86	+0.8
1,997,171	+		DZA65_RS09495	0.86	+0.8
1,997,171	+		DZA65_RS09495	0.86	-0.9
1,997,171	+		DZA65_RS09495	0.86	+0.5
1,997,171	+		DZA65_RS09495	0.86	-0.4
1,997,171	+		DZA65_RS09495	0.86	-1.9
1,997,171	+		DZA65_RS09495	0.86	-1.3
1,997,171	+		DZA65_RS09495	0.86	-1.6
1,997,171	+		DZA65_RS09495	0.86	+0.3
1,997,171	+		DZA65_RS09495	0.86	+0.4
1,997,171	+		DZA65_RS09495	0.86	+0.5
1,997,171	+		DZA65_RS09495	0.86	-1.5
1,997,171	+		DZA65_RS09495	0.86	+0.4
1,997,171	+		DZA65_RS09495	0.86	+0.3
1,997,172	-		DZA65_RS09495	0.86	+0.2
1,997,172	-				+1.8
1,997,172	-		DZA65_RS09495	0.86	-1.1
1,997,172	-		DZA65_RS09495	0.86	+1.3
1,997,172	-		DZA65_RS09495	0.86	-0.8
1,997,172	-		DZA65_RS09495	0.86	+0.7
1,997,172	-		DZA65_RS09495	0.86	-1.0
1,997,172	-		DZA65_RS09495	0.86	-0.2
1,997,172	-		DZA65_RS09495	0.86	-0.4
1,997,172	-		DZA65_RS09495	0.86	-1.8
1,997,172	-		DZA65_RS09495	0.86	+0.2
1,997,172	-		DZA65_RS09495	0.86	+0.8
1,997,172	-		DZA65_RS09495	0.86	-1.0
1,997,172	-		DZA65_RS09495	0.86	+0.2
1,997,172	-		DZA65_RS09495	0.86	-1.8
1,997,172	-		DZA65_RS09495	0.86	-1.2
1,997,172	-		DZA65_RS09495	0.86	+3.3
1,997,172	-		DZA65_RS09495	0.86	-0.1
1,997,172	-		DZA65_RS09495	0.86	+1.1
1,997,172	-		DZA65_RS09495	0.86	+1.0
1,997,172	-		DZA65_RS09495	0.86	+0.5
1,997,172	-		DZA65_RS09495	0.86	+0.8
1,997,172	-		DZA65_RS09495	0.86	-0.5
1,997,175	+		DZA65_RS09495	0.88	+0.5
1,997,175	+				-1.0
1,997,175	+		DZA65_RS09495	0.88	+0.2
1,997,175	+		DZA65_RS09495	0.88	+0.2
1,997,175	+		DZA65_RS09495	0.88	+0.2
1,997,175	+		DZA65_RS09495	0.88	+0.6
1,997,175	+		DZA65_RS09495	0.88	+0.9
1,997,175	+		DZA65_RS09495	0.88	-3.0
1,997,175	+		DZA65_RS09495	0.88	+0.7
1,997,175	+		DZA65_RS09495	0.88	+0.8
1,997,175	+		DZA65_RS09495	0.88	+0.2
1,997,175	+		DZA65_RS09495	0.88	+1.0
1,997,175	+		DZA65_RS09495	0.88	-0.1
1,997,175	+		DZA65_RS09495	0.88	+0.1
1,997,175	+		DZA65_RS09495	0.88	+0.1
1,997,175	+		DZA65_RS09495	0.88	-0.5
1,997,176	-		DZA65_RS09495	0.88	+1.8
1,997,176	-		DZA65_RS09495	0.88	-1.1
1,997,176	-		DZA65_RS09495	0.88	+1.8
1,997,176	-		DZA65_RS09495	0.88	-0.6
1,997,176	-		DZA65_RS09495	0.88	-1.4
1,997,176	-		DZA65_RS09495	0.88	-0.1
1,997,176	-		DZA65_RS09495	0.88	+0.6
1,997,176	-		DZA65_RS09495	0.88	-0.4
1,997,176	-		DZA65_RS09495	0.88	+0.5
1,997,176	-		DZA65_RS09495	0.88	-0.4
1,997,176	-		DZA65_RS09495	0.88	+2.8
1,997,176	-		DZA65_RS09495	0.88	+1.0
1,997,176	-		DZA65_RS09495	0.88	-0.6
1,997,178	+		DZA65_RS09495	0.89	-1.4
1,997,179	-		DZA65_RS09495	0.89	-0.4
1,997,179	-		DZA65_RS09495	0.89	+1.1
1,997,204	+				-0.2
1,997,204	+				-1.8
1,997,204	+				+0.5
1,997,204	+				-0.3
1,997,204	+				-0.1
1,997,204	+				+0.5
1,997,204	+				-1.1
1,997,204	+				-0.6
1,997,204	+				+1.2
1,997,205	-				-1.2
1,997,205	-				-0.1
1,997,205	-				-0.5
1,997,205	-				-0.8
1,997,205	-				+0.6
1,997,205	-				-0.3
1,997,205	-				-0.7
1,997,205	-				-0.5
1,997,205	-				+0.7
1,997,205	-				+2.2
1,997,219	+				-0.8
1,997,220	-				-1.3
1,997,244	+				+0.2
1,997,264	+				-0.5
1,997,265	-				+1.3
1,997,265	-				+0.8
1,997,266	+				+1.0
1,997,266	+				-1.1
1,997,266	+				-2.1
1,997,266	+				-0.3
1,997,266	+				-0.3
1,997,266	+				+0.6
1,997,266	+				+0.4
1,997,267	-				-0.2
1,997,267	-				+0.4
1,997,267	-				+0.5
1,997,267	-				-0.2
1,997,267	-				+0.1
1,997,267	-				+0.5
1,997,267	-				+0.2
1,997,333	-				-0.8
1,997,336	-				-2.1
1,997,427	+				+0.4
1,997,427	+				+0.6
1,997,428	-				-2.6
1,997,454	+				-0.8
1,997,455	-				+0.3
1,997,455	-				-0.8
1,997,461	+				-0.1
1,997,461	+				-2.0
1,997,461	+				-0.0
1,997,462	-				+0.8
1,997,462	-				+0.5
1,997,469	-				+1.4
1,997,522	+				+0.2
1,997,556	-		DZA65_RS09500	0.12	-1.7
1,997,570	+		DZA65_RS09500	0.14	-0.1
1,997,668	-		DZA65_RS09500	0.28	-1.9
1,997,668	-		DZA65_RS09500	0.28	-0.1
1,997,668	-		DZA65_RS09500	0.28	-0.2
1,997,680	+		DZA65_RS09500	0.30	-0.2
1,997,680	+		DZA65_RS09500	0.30	-0.2
1,997,680	+		DZA65_RS09500	0.30	+0.7
1,997,680	+		DZA65_RS09500	0.30	+0.3
1,997,680	+		DZA65_RS09500	0.30	-0.7
1,997,680	+		DZA65_RS09500	0.30	-0.4
1,997,681	-		DZA65_RS09500	0.30	+0.9
1,997,681	-		DZA65_RS09500	0.30	+1.1
1,997,722	+		DZA65_RS09500	0.36	-0.5
1,997,722	+		DZA65_RS09500	0.36	+0.2
1,997,722	+		DZA65_RS09500	0.36	-0.8
1,997,727	+		DZA65_RS09500	0.37	-0.9
1,997,727	+		DZA65_RS09500	0.37	-0.0
1,997,727	+		DZA65_RS09500	0.37	+0.6
1,997,832	+		DZA65_RS09500	0.52	-1.4
1,997,832	+		DZA65_RS09500	0.52	-0.3
1,997,863	+		DZA65_RS09500	0.56	-1.8
1,997,863	+		DZA65_RS09500	0.56	+1.0
1,997,864	-		DZA65_RS09500	0.56	+0.5
1,997,930	+		DZA65_RS09500	0.66	+1.0
1,997,930	+		DZA65_RS09500	0.66	-0.7
1,997,930	+		DZA65_RS09500	0.66	-1.3
1,997,930	+		DZA65_RS09500	0.66	-1.0