Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09235 and DZA65_RS09240 are separated by 29 nucleotides DZA65_RS09240 and DZA65_RS09245 are separated by 74 nucleotides DZA65_RS09245 and DZA65_RS09250 are separated by 1 nucleotides DZA65_RS09250 and DZA65_RS09255 are separated by 1 nucleotides
DZA65_RS09235: DZA65_RS09235 - 5-oxoprolinase subunit PxpA, at 1,948,850 to 1,949,632
_RS09235
DZA65_RS09240: DZA65_RS09240 - biotin carboxyl carrier domain-containing protein, at 1,949,662 to 1,949,910
_RS09240
DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370
_RS09245
DZA65_RS09250: DZA65_RS09250 - allophanate hydrolase subunit 1, at 1,951,372 to 1,952,256
_RS09250
DZA65_RS09255: DZA65_RS09255 - biotin-dependent carboxyltransferase, at 1,952,258 to 1,953,265
_RS09255
Position (kb) 1949
1950
1951
1952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1949.086 kb on + strand, within DZA65_RS09235 at 1949.086 kb on + strand, within DZA65_RS09235 at 1949.087 kb on - strand, within DZA65_RS09235 at 1949.127 kb on - strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.169 kb on + strand, within DZA65_RS09235 at 1949.204 kb on + strand, within DZA65_RS09235 at 1949.204 kb on + strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.554 kb on + strand at 1949.554 kb on + strand at 1949.555 kb on - strand at 1949.614 kb on + strand at 1949.614 kb on + strand at 1949.615 kb on - strand at 1949.749 kb on - strand, within DZA65_RS09240 at 1949.772 kb on + strand, within DZA65_RS09240 at 1949.914 kb on + strand at 1949.915 kb on - strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.927 kb on - strand at 1949.927 kb on - strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.930 kb on - strand at 1949.930 kb on - strand at 1949.930 kb on - strand at 1949.934 kb on + strand at 1949.934 kb on + strand at 1949.941 kb on + strand at 1949.958 kb on - strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.961 kb on - strand at 1950.139 kb on + strand, within DZA65_RS09245 at 1950.139 kb on + strand, within DZA65_RS09245 at 1950.140 kb on - strand, within DZA65_RS09245 at 1950.171 kb on + strand, within DZA65_RS09245 at 1950.172 kb on - strand, within DZA65_RS09245 at 1950.442 kb on + strand, within DZA65_RS09245 at 1950.443 kb on - strand, within DZA65_RS09245 at 1950.443 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.596 kb on + strand, within DZA65_RS09245 at 1950.615 kb on - strand, within DZA65_RS09245 at 1950.653 kb on - strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.661 kb on - strand, within DZA65_RS09245 at 1950.661 kb on - strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.701 kb on - strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1951.131 kb on + strand, within DZA65_RS09245 at 1951.134 kb on + strand, within DZA65_RS09245 at 1951.135 kb on - strand, within DZA65_RS09245 at 1951.301 kb on + strand at 1951.302 kb on - strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.393 kb on + strand at 1951.518 kb on + strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.603 kb on - strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.745 kb on - strand, within DZA65_RS09250 at 1951.817 kb on + strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.897 kb on + strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand at 1951.963 kb on + strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.044 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.117 kb on - strand, within DZA65_RS09250 at 1952.174 kb on + strand at 1952.217 kb on + strand at 1952.224 kb on + strand at 1952.224 kb on + strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.242 kb on + strand at 1952.242 kb on + strand at 1952.243 kb on - strand at 1952.243 kb on - strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.255 kb on - strand at 1952.255 kb on - strand at 1952.328 kb on + strand at 1952.328 kb on + strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.351 kb on + strand at 1952.352 kb on - strand at 1952.352 kb on - strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.355 kb on - strand at 1952.355 kb on - strand at 1952.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,949,086 + DZA65_RS09235 0.30 +0.2 1,949,086 + DZA65_RS09235 0.30 -1.4 1,949,087 - DZA65_RS09235 0.30 -2.8 1,949,127 - DZA65_RS09235 0.35 +2.5 1,949,162 + DZA65_RS09235 0.40 -0.5 1,949,162 + DZA65_RS09235 0.40 +0.2 1,949,162 + DZA65_RS09235 0.40 +0.2 1,949,162 + DZA65_RS09235 0.40 +0.3 1,949,169 + DZA65_RS09235 0.41 -0.0 1,949,204 + DZA65_RS09235 0.45 +1.1 1,949,204 + DZA65_RS09235 0.45 -0.1 1,949,205 - DZA65_RS09235 0.45 -1.8 1,949,205 - DZA65_RS09235 0.45 +1.4 1,949,205 - DZA65_RS09235 0.45 -0.6 1,949,205 - DZA65_RS09235 0.45 -2.3 1,949,206 + DZA65_RS09235 0.45 -0.2 1,949,206 + DZA65_RS09235 0.45 +0.3 1,949,206 + DZA65_RS09235 0.45 -1.8 1,949,206 + DZA65_RS09235 0.45 +0.3 1,949,206 + DZA65_RS09235 0.45 -0.7 1,949,206 + DZA65_RS09235 0.45 -0.6 1,949,206 + DZA65_RS09235 0.45 -0.9 1,949,206 + DZA65_RS09235 0.45 -0.5 1,949,207 - DZA65_RS09235 0.46 -0.3 1,949,207 - DZA65_RS09235 0.46 +1.4 1,949,207 - DZA65_RS09235 0.46 -1.6 1,949,207 - DZA65_RS09235 0.46 -0.0 1,949,207 - DZA65_RS09235 0.46 -0.8 1,949,207 - DZA65_RS09235 0.46 +2.2 1,949,554 + +1.2 1,949,554 + -0.1 1,949,555 - -0.1 1,949,614 + -0.1 1,949,614 + -1.0 1,949,615 - +0.0 1,949,749 - DZA65_RS09240 0.35 -1.4 1,949,772 + DZA65_RS09240 0.44 -0.1 1,949,914 + +0.2 1,949,915 - -1.8 1,949,926 + +0.2 1,949,926 + +0.0 1,949,926 + +0.2 1,949,926 + +0.2 1,949,927 - +0.6 1,949,927 - -1.1 1,949,929 + -1.9 1,949,929 + -0.1 1,949,929 + +0.9 1,949,929 + +1.2 1,949,929 + +0.0 1,949,929 + +1.2 1,949,930 - -0.4 1,949,930 - +1.4 1,949,930 - -2.4 1,949,934 + +0.1 1,949,934 + -0.2 1,949,941 + -0.8 1,949,958 - +1.2 1,949,960 + -1.4 1,949,960 + -0.1 1,949,960 + -0.6 1,949,960 + -1.1 1,949,961 - -0.8 1,950,139 + DZA65_RS09245 0.11 +0.3 1,950,139 + DZA65_RS09245 0.11 -2.0 1,950,140 - DZA65_RS09245 0.11 +0.3 1,950,171 + DZA65_RS09245 0.13 -0.8 1,950,172 - DZA65_RS09245 0.13 +0.6 1,950,442 + DZA65_RS09245 0.33 +0.2 1,950,443 - DZA65_RS09245 0.33 -1.2 1,950,443 - DZA65_RS09245 0.33 -0.2 1,950,583 - DZA65_RS09245 0.43 +0.1 1,950,583 - DZA65_RS09245 0.43 +0.4 1,950,583 - DZA65_RS09245 0.43 +0.2 1,950,596 + DZA65_RS09245 0.44 +0.2 1,950,615 - DZA65_RS09245 0.45 -0.3 1,950,653 - DZA65_RS09245 0.48 +0.4 1,950,660 + DZA65_RS09245 0.49 +0.9 1,950,660 + DZA65_RS09245 0.49 +0.2 1,950,660 + DZA65_RS09245 0.49 +0.7 1,950,660 + DZA65_RS09245 0.49 -1.0 1,950,660 + DZA65_RS09245 0.49 -1.3 1,950,661 - DZA65_RS09245 0.49 +0.2 1,950,661 - DZA65_RS09245 0.49 +1.5 1,950,700 + DZA65_RS09245 0.52 +0.0 1,950,700 + DZA65_RS09245 0.52 -1.8 1,950,700 + DZA65_RS09245 0.52 -0.4 1,950,701 - DZA65_RS09245 0.52 +0.9 1,950,813 + DZA65_RS09245 0.60 +0.6 1,950,813 + DZA65_RS09245 0.60 +1.1 1,950,813 + DZA65_RS09245 0.60 +0.5 1,950,843 + DZA65_RS09245 0.62 +0.4 1,950,843 + DZA65_RS09245 0.62 -1.4 1,950,843 + DZA65_RS09245 0.62 -0.4 1,950,843 + DZA65_RS09245 0.62 +0.5 1,950,843 + DZA65_RS09245 0.62 +0.1 1,950,843 + DZA65_RS09245 0.62 -0.3 1,950,844 - DZA65_RS09245 0.62 +0.4 1,950,844 - DZA65_RS09245 0.62 +0.2 1,950,844 - DZA65_RS09245 0.62 +0.2 1,950,844 - DZA65_RS09245 0.62 +0.2 1,950,844 - DZA65_RS09245 0.62 +0.4 1,950,844 - DZA65_RS09245 0.62 +1.1 1,950,844 - DZA65_RS09245 0.62 +0.8 1,951,131 + DZA65_RS09245 0.83 +0.4 1,951,134 + DZA65_RS09245 0.83 +0.1 1,951,135 - DZA65_RS09245 0.83 +0.3 1,951,301 + +1.2 1,951,302 - -0.9 1,951,388 + -1.1 1,951,388 + -1.0 1,951,388 + +0.8 1,951,388 + -0.6 1,951,388 + -1.4 1,951,389 - +0.9 1,951,389 - -1.6 1,951,389 - -0.4 1,951,389 - +0.1 1,951,389 - -1.8 1,951,393 + +0.3 1,951,518 + DZA65_RS09250 0.16 +0.3 1,951,519 - DZA65_RS09250 0.17 +0.2 1,951,519 - DZA65_RS09250 0.17 -0.2 1,951,603 - DZA65_RS09250 0.26 +0.1 1,951,666 + DZA65_RS09250 0.33 -1.1 1,951,666 + DZA65_RS09250 0.33 -0.3 1,951,666 + DZA65_RS09250 0.33 +1.4 1,951,667 - DZA65_RS09250 0.33 -1.2 1,951,667 - DZA65_RS09250 0.33 +1.5 1,951,667 - DZA65_RS09250 0.33 -0.2 1,951,667 - DZA65_RS09250 0.33 -0.2 1,951,667 - DZA65_RS09250 0.33 -1.1 1,951,744 + DZA65_RS09250 0.42 -1.0 1,951,744 + DZA65_RS09250 0.42 -1.0 1,951,745 - DZA65_RS09250 0.42 +1.0 1,951,817 + DZA65_RS09250 0.50 +1.1 1,951,852 - DZA65_RS09250 0.54 +0.4 1,951,852 - DZA65_RS09250 0.54 +1.5 1,951,897 + DZA65_RS09250 0.59 +1.8 1,951,898 - DZA65_RS09250 0.59 -0.7 1,951,898 - DZA65_RS09250 0.59 +0.7 1,951,898 - -1.4 1,951,963 + DZA65_RS09250 0.67 -1.8 1,951,964 - DZA65_RS09250 0.67 +0.9 1,951,964 - DZA65_RS09250 0.67 -0.9 1,951,964 - DZA65_RS09250 0.67 -0.4 1,952,020 + DZA65_RS09250 0.73 +0.9 1,952,020 + DZA65_RS09250 0.73 -0.8 1,952,021 - DZA65_RS09250 0.73 -0.5 1,952,021 - DZA65_RS09250 0.73 -0.8 1,952,044 + DZA65_RS09250 0.76 -1.7 1,952,116 + DZA65_RS09250 0.84 -0.0 1,952,116 + DZA65_RS09250 0.84 +0.5 1,952,117 - DZA65_RS09250 0.84 +1.2 1,952,174 + +0.5 1,952,217 + +0.4 1,952,224 + +1.2 1,952,224 + -0.4 1,952,225 - +0.5 1,952,225 - +0.4 1,952,225 - +1.2 1,952,225 - +0.2 1,952,225 - +0.6 1,952,225 - +1.5 1,952,225 - -0.1 1,952,242 + -0.5 1,952,242 + +0.5 1,952,243 - -1.4 1,952,243 - +0.5 1,952,254 + -0.1 1,952,254 + -0.0 1,952,254 + +2.3 1,952,255 - +0.9 1,952,255 - +0.2 1,952,328 + +0.4 1,952,328 + -0.9 1,952,329 - -1.4 1,952,329 - -1.6 1,952,329 - +0.3 1,952,351 + -0.5 1,952,352 - +0.7 1,952,352 - +1.3 1,952,354 + +2.0 1,952,354 + -0.0 1,952,354 + -1.0 1,952,355 - +0.4 1,952,355 - -0.5 1,952,355 - -0.9
Or see this region's nucleotide sequence