Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,933,027	+				+1.2
1,933,027	+				+0.5
1,933,027	+				-1.6
1,933,028	-				+0.2
1,933,028	-				-0.7
1,933,096	+				-1.2
1,933,096	+				-0.8
1,933,097	-				-0.1
1,933,097	-				-1.1
1,933,105	+				-1.7
1,933,105	+				+0.6
1,933,105	+				+0.4
1,933,105	+				+3.8
1,933,105	+				-0.8
1,933,105	+				-1.2
1,933,105	+				-0.3
1,933,105	+				-0.6
1,933,105	+				-0.8
1,933,105	+				-0.0
1,933,105	+				-1.4
1,933,105	+				-0.2
1,933,105	+				+0.2
1,933,105	+				-2.4
1,933,105	+				-0.6
1,933,106	-				+0.9
1,933,106	-				-1.2
1,933,106	-				-1.5
1,933,106	-				-0.1
1,933,106	-				-1.2
1,933,106	-				-1.1
1,933,106	-				+0.2
1,933,106	-				+0.1
1,933,107	+				+1.6
1,933,107	+				+0.6
1,933,108	-				-0.8
1,933,108	-				-0.8
1,933,115	+				+0.2
1,933,115	+				-1.6
1,933,208	-		DZA65_RS09160	0.19	-3.3
1,933,232	+		DZA65_RS09160	0.22	-2.6
1,933,232	+		DZA65_RS09160	0.22	-0.6
1,933,232	+		DZA65_RS09160	0.22	-1.4
1,933,232	+		DZA65_RS09160	0.22	+0.6
1,933,232	+		DZA65_RS09160	0.22	+0.2
1,933,232	+		DZA65_RS09160	0.22	-0.8
1,933,232	+		DZA65_RS09160	0.22	-2.5
1,933,232	+		DZA65_RS09160	0.22	+0.1
1,933,232	+		DZA65_RS09160	0.22	-1.1
1,933,232	+		DZA65_RS09160	0.22	-0.1
1,933,233	-		DZA65_RS09160	0.22	+0.2
1,933,233	-		DZA65_RS09160	0.22	-0.3
1,933,282	+		DZA65_RS09160	0.27	-2.1
1,933,282	+				+0.7
1,933,282	+		DZA65_RS09160	0.27	-0.6
1,933,282	+		DZA65_RS09160	0.27	-2.6
1,933,282	+		DZA65_RS09160	0.27	-0.3
1,933,283	-		DZA65_RS09160	0.27	-0.3
1,933,283	-		DZA65_RS09160	0.27	+1.5
1,933,283	-		DZA65_RS09160	0.27	+1.4
1,933,283	-		DZA65_RS09160	0.27	+0.4
1,933,284	+		DZA65_RS09160	0.27	+0.9
1,933,284	+		DZA65_RS09160	0.27	-1.0
1,933,284	+		DZA65_RS09160	0.27	-2.1
1,933,285	-		DZA65_RS09160	0.27	-0.2
1,933,285	-		DZA65_RS09160	0.27	+1.4
1,933,305	+		DZA65_RS09160	0.29	-1.2
1,933,306	-		DZA65_RS09160	0.29	+0.3
1,933,485	+		DZA65_RS09160	0.48	-1.2
1,933,485	+		DZA65_RS09160	0.48	+0.0
1,933,486	-		DZA65_RS09160	0.48	-0.4
1,933,566	+		DZA65_RS09160	0.56	-0.8
1,933,567	-		DZA65_RS09160	0.56	-0.6
1,933,639	+		DZA65_RS09160	0.64	-1.8
1,933,639	+		DZA65_RS09160	0.64	-2.1
1,933,640	-		DZA65_RS09160	0.64	-0.7
1,933,640	-		DZA65_RS09160	0.64	+0.3
1,933,656	+		DZA65_RS09160	0.66	+1.4
1,933,717	+		DZA65_RS09160	0.72	+0.2
1,933,717	+		DZA65_RS09160	0.72	-0.9
1,933,717	+		DZA65_RS09160	0.72	+0.6
1,933,717	+		DZA65_RS09160	0.72	-0.1
1,933,717	+		DZA65_RS09160	0.72	+0.6
1,933,718	-		DZA65_RS09160	0.72	+0.1
1,933,718	-		DZA65_RS09160	0.72	+1.8
1,933,970	+				-0.2
1,934,000	+				-1.2
1,934,006	+				-2.2
1,934,006	+				-1.1
1,934,007	-				-0.1
1,934,007	-				-0.4
1,934,034	+				+1.1
1,934,034	+				+0.9
1,934,034	+				+0.9
1,934,041	+				+0.6
1,934,041	+				-1.8
1,934,065	+				-1.4
1,934,065	+				+1.8
1,934,065	+				-0.3
1,934,065	+				-0.0
1,934,065	+				+0.3
1,934,065	+				+1.7
1,934,065	+				+1.4
1,934,065	+				-0.1
1,934,066	-				+0.6
1,934,066	-				-0.2
1,934,066	-				-0.4
1,934,066	-				-0.2
1,934,066	-				-1.8
1,934,066	-				-1.7
1,934,066	-				-1.0
1,934,110	+				-0.1
1,934,110	+				+0.2
1,934,110	+				+0.2
1,934,110	+				-0.2
1,934,110	+				+1.0
1,934,110	+				+0.2
1,934,111	-				+1.0
1,934,111	-				-0.1
1,934,111	-				+0.9
1,934,111	-				-1.0
1,934,111	-				-1.8
1,934,112	+				-1.1
1,934,112	+				-0.2
1,934,179	-				+0.6
1,934,179	-				+0.5
1,934,348	+		DZA65_RS09165	0.17	-2.4
1,934,349	-		DZA65_RS09165	0.17	-0.8
1,934,349	-		DZA65_RS09165	0.17	-1.0
1,934,482	+		DZA65_RS09165	0.25	+2.8
1,934,599	+		DZA65_RS09165	0.31	-1.6
1,934,599	+		DZA65_RS09165	0.31	-0.2
1,934,600	-		DZA65_RS09165	0.31	-1.1
1,934,600	-		DZA65_RS09165	0.31	-1.4
1,934,608	+		DZA65_RS09165	0.31	+0.9
1,934,608	+		DZA65_RS09165	0.31	+0.5
1,934,608	+		DZA65_RS09165	0.31	+0.4
1,934,609	-		DZA65_RS09165	0.31	+0.2
1,934,609	-		DZA65_RS09165	0.31	-1.0
1,934,609	-		DZA65_RS09165	0.31	-0.5
1,934,761	+		DZA65_RS09165	0.40	-2.1
1,934,800	+		DZA65_RS09165	0.42	-0.8
1,934,800	+		DZA65_RS09165	0.42	+0.7
1,934,800	+		DZA65_RS09165	0.42	-0.3
1,934,800	+		DZA65_RS09165	0.42	-1.1
1,934,800	+		DZA65_RS09165	0.42	-1.1
1,934,800	+		DZA65_RS09165	0.42	-0.5
1,934,800	+		DZA65_RS09165	0.42	-0.2
1,934,800	+		DZA65_RS09165	0.42	-1.0
1,934,800	+		DZA65_RS09165	0.42	+0.6
1,934,801	-		DZA65_RS09165	0.42	+0.2
1,934,801	-		DZA65_RS09165	0.42	+0.1
1,934,801	-		DZA65_RS09165	0.42	-0.8
1,934,801	-		DZA65_RS09165	0.42	-0.6
1,934,801	-		DZA65_RS09165	0.42	-1.5
1,934,801	-		DZA65_RS09165	0.42	+1.9
1,934,801	-		DZA65_RS09165	0.42	+0.9
1,934,801	-		DZA65_RS09165	0.42	+0.2
1,934,801	-		DZA65_RS09165	0.42	-0.8
1,934,866	-		DZA65_RS09165	0.45	-0.4
1,934,911	+		DZA65_RS09165	0.48	+0.1
1,935,014	+		DZA65_RS09165	0.53	+0.6
1,935,014	+		DZA65_RS09165	0.53	+0.1
1,935,014	+		DZA65_RS09165	0.53	-0.9
1,935,014	+		DZA65_RS09165	0.53	-0.2
1,935,014	+		DZA65_RS09165	0.53	-0.5
1,935,015	-		DZA65_RS09165	0.53	+0.4
1,935,015	-		DZA65_RS09165	0.53	+0.3
1,935,270	+		DZA65_RS09165	0.67	-0.5
1,935,270	+		DZA65_RS09165	0.67	-0.8
1,935,271	-		DZA65_RS09165	0.67	-1.4
1,935,271	-		DZA65_RS09165	0.67	-0.5
1,935,271	-		DZA65_RS09165	0.67	+0.3
1,935,271	-		DZA65_RS09165	0.67	+1.8
1,935,271	-		DZA65_RS09165	0.67	+0.3
1,935,271	-		DZA65_RS09165	0.67	+0.2
1,935,272	+		DZA65_RS09165	0.67	-1.8
1,935,273	-		DZA65_RS09165	0.67	+1.2
1,935,328	+		DZA65_RS09165	0.70	-0.2
1,935,328	+		DZA65_RS09165	0.70	+0.4
1,935,328	+		DZA65_RS09165	0.70	-1.5
1,935,328	+		DZA65_RS09165	0.70	-0.8
1,935,328	+		DZA65_RS09165	0.70	+0.3
1,935,328	+		DZA65_RS09165	0.70	-0.4
1,935,328	+		DZA65_RS09165	0.70	-0.1
1,935,328	+		DZA65_RS09165	0.70	+0.5
1,935,329	-		DZA65_RS09165	0.70	+0.4
1,935,329	-		DZA65_RS09165	0.70	-2.1
1,935,329	-		DZA65_RS09165	0.70	-1.3
1,935,352	-		DZA65_RS09165	0.71	+0.2
1,935,473	-		DZA65_RS09165	0.78	+0.1
1,935,481	+		DZA65_RS09165	0.78	-0.8
1,935,482	-		DZA65_RS09165	0.78	-0.0
1,935,482	-		DZA65_RS09165	0.78	-0.1
1,935,541	+				-1.4
1,935,541	+		DZA65_RS09165	0.81	-1.4
1,935,542	-		DZA65_RS09165	0.81	-0.5
1,935,586	+		DZA65_RS09165	0.84	-0.4
1,935,587	-		DZA65_RS09165	0.84	-1.1
1,935,608	+		DZA65_RS09165	0.85	-0.4
1,935,608	+		DZA65_RS09165	0.85	-0.7
1,935,608	+		DZA65_RS09165	0.85	-0.4
1,935,609	-		DZA65_RS09165	0.85	-0.4
1,935,609	-		DZA65_RS09165	0.85	+1.2
1,935,609	-		DZA65_RS09165	0.85	-0.8
1,935,609	-		DZA65_RS09165	0.85	+0.2
1,935,609	-		DZA65_RS09165	0.85	-0.3
1,935,609	-		DZA65_RS09165	0.85	+0.2
1,935,609	-		DZA65_RS09165	0.85	-0.3
1,935,661	+		DZA65_RS09165	0.88	-2.3
1,935,834	+				+0.4
1,935,834	+				+0.1
1,935,834	+				+3.0
1,935,834	+				+1.2
1,935,834	+				+0.8
1,935,834	+				-0.2
1,935,834	+				-0.2
1,935,835	-				+0.2
1,935,835	-				-0.2
1,935,835	-				-1.4
1,935,835	-				-1.2
1,935,835	-				+1.1
1,935,835	-				-1.0
1,935,857	+				+0.0
1,935,857	+				-0.7
1,935,963	+				+0.8
1,935,964	-				-0.5
1,935,977	+				-0.6
1,936,037	+				-0.5
1,936,040	-				+0.1
1,936,040	-				-2.6
1,936,144	-				-1.4
1,936,167	+				+0.6
1,936,167	+				+1.5
1,936,167	+				-0.7
1,936,167	+				+0.2
1,936,167	+				-1.8
1,936,167	+				+0.4
1,936,167	+				-0.3
1,936,167	+				+0.9
1,936,167	+				-0.5
1,936,167	+				-1.0
1,936,168	-				+0.4
1,936,168	-				+2.3
1,936,168	-				+0.7
1,936,168	-				+0.3
1,936,168	-				-0.3
1,936,168	-				+1.8
1,936,168	-				+1.3
1,936,168	-				-0.5
1,936,168	-				+1.0
1,936,168	-				+2.1
1,936,168	-				-0.5
1,936,168	-				-0.0
1,936,177	+				-0.4
1,936,183	+				+1.8
1,936,183	+				-1.5
1,936,183	+				+1.5
1,936,183	+				+0.5
1,936,183	+				+1.9
1,936,183	+				+1.8
1,936,183	+				+1.3
1,936,183	+				-2.4
1,936,184	-				-0.8
1,936,184	-				+0.9
1,936,184	-				-1.1
1,936,184	-				+2.2
1,936,339	+		DZA65_RS09170	0.13	-0.3
1,936,339	+		DZA65_RS09170	0.13	+0.9
1,936,339	+		DZA65_RS09170	0.13	-0.3
1,936,339	+		DZA65_RS09170	0.13	+0.6
1,936,339	+		DZA65_RS09170	0.13	-1.3
1,936,339	+		DZA65_RS09170	0.13	-0.9
1,936,340	-		DZA65_RS09170	0.13	+0.7
1,936,340	-				+0.2
1,936,340	-		DZA65_RS09170	0.13	+0.5
1,936,624	+		DZA65_RS09170	0.35	+0.0
1,936,624	+		DZA65_RS09170	0.35	+0.9
1,936,625	-		DZA65_RS09170	0.36	-0.3
1,936,630	+		DZA65_RS09170	0.36	-1.1
1,936,630	+		DZA65_RS09170	0.36	+0.5
1,936,685	-		DZA65_RS09170	0.40	+0.9
1,936,685	-		DZA65_RS09170	0.40	-0.3
1,936,764	+		DZA65_RS09170	0.46	-0.5
1,936,764	+		DZA65_RS09170	0.46	+0.1
1,936,764	+		DZA65_RS09170	0.46	-0.2
1,936,765	-		DZA65_RS09170	0.46	+0.3
1,936,765	-		DZA65_RS09170	0.46	-0.8
1,936,765	-		DZA65_RS09170	0.46	-0.5
1,936,769	-		DZA65_RS09170	0.47	-1.2
1,936,881	+		DZA65_RS09170	0.56	+0.2
1,936,882	-		DZA65_RS09170	0.56	+0.6