Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,921,359	+		DZA65_RS09115	0.78	-0.1
1,921,360	-		DZA65_RS09115	0.78	-0.8
1,921,360	-		DZA65_RS09115	0.78	-1.3
1,921,396	+		DZA65_RS09115	0.82	-0.5
1,921,396	+		DZA65_RS09115	0.82	-1.5
1,921,396	+		DZA65_RS09115	0.82	+0.7
1,921,397	-		DZA65_RS09115	0.82	-2.4
1,921,397	-		DZA65_RS09115	0.82	+0.0
1,921,397	-		DZA65_RS09115	0.82	-1.5
1,921,397	-				-2.1
1,921,432	+		DZA65_RS09115	0.86	-0.4
1,921,432	+		DZA65_RS09115	0.86	+0.2
1,921,433	-		DZA65_RS09115	0.86	+0.0
1,921,433	-		DZA65_RS09115	0.86	+0.6
1,921,433	-		DZA65_RS09115	0.86	-0.1
1,921,433	-		DZA65_RS09115	0.86	-2.8
1,921,433	-		DZA65_RS09115	0.86	-1.5
1,921,433	-		DZA65_RS09115	0.86	-0.2
1,921,480	+				-1.8
1,921,480	+				-1.1
1,921,480	+				-0.8
1,921,481	-				+0.8
1,921,481	-				-0.9
1,921,537	-				-0.7
1,921,572	+				-2.4
1,921,673	+				+2.5
1,921,673	+				+0.4
1,921,674	-				-0.5
1,921,674	-				-0.5
1,921,689	+				+0.4
1,921,689	+				-2.6
1,921,690	-				+0.8
1,921,690	-				+0.2
1,921,690	-				+0.6
1,921,690	-				+0.9
1,921,708	+				+0.9
1,921,709	-				+0.2
1,921,725	+				+1.4
1,921,742	+				-0.5
1,921,742	+				-0.8
1,921,761	+				-1.6
1,921,772	-				+1.2
1,921,772	-				-0.2
1,921,811	+				+0.6
1,921,811	+				-2.0
1,921,812	-				-0.2
1,921,812	-				-0.3
1,921,812	-				-1.0
1,921,825	-				+0.7
1,921,825	-				-0.9
1,921,828	+				+3.8
1,921,828	+				-0.1
1,921,828	+				+0.2
1,921,829	-				-1.8
1,921,829	-				+0.8
1,921,829	-				-0.7
1,921,830	+				-0.6
1,921,830	+				-1.3
1,921,830	+				+1.2
1,921,830	+				+0.2
1,921,831	-				-0.8
1,921,831	-				+0.5
1,921,831	-				+0.2
1,921,831	-				-0.4
1,921,832	+				+0.8
1,921,832	+				+0.0
1,921,832	+				-2.4
1,921,832	+				+1.1
1,921,832	+				-0.5
1,921,833	-				+1.1
1,921,833	-				+0.5
1,921,885	-				-0.3
1,921,892	+				+0.4
1,921,910	-				+1.6
1,922,021	+				+0.0
1,922,021	+				-0.2
1,922,035	-				+0.3
1,922,039	-				+1.5
1,922,073	+				+2.8
1,922,073	+				+1.2
1,922,074	-				-1.2
1,922,074	-				-0.1
1,922,074	-				-0.3
1,922,134	+				+0.4
1,922,134	+				+1.1
1,922,135	-				-3.0
1,922,135	-				+1.2
1,922,196	+				+2.3
1,922,196	+				+0.9
1,922,196	+				+0.2
1,922,253	-				+1.3
1,922,256	-				-2.8
1,922,317	+				-0.6
1,922,318	-				-0.3
1,922,318	-				+0.2
1,922,383	+				-0.1
1,922,383	+				-0.8
1,922,383	+				-0.0
1,922,383	+				-0.5
1,922,383	+				+1.2
1,922,384	-				-0.8
1,922,415	+		DZA65_RS09120	0.10	+0.5
1,922,491	+		DZA65_RS09120	0.24	+0.2
1,922,491	+		DZA65_RS09120	0.24	+0.7
1,922,491	+		DZA65_RS09120	0.24	+0.6
1,922,491	+		DZA65_RS09120	0.24	-1.8
1,922,491	+		DZA65_RS09120	0.24	+0.5
1,922,492	-		DZA65_RS09120	0.25	-0.9
1,922,492	-		DZA65_RS09120	0.25	-1.8
1,922,530	-		DZA65_RS09120	0.32	-0.7
1,922,541	-		DZA65_RS09120	0.34	-1.1
1,922,569	-		DZA65_RS09120	0.39	+0.2
1,922,569	-		DZA65_RS09120	0.39	+0.4
1,922,569	-		DZA65_RS09120	0.39	+0.8
1,922,582	+		DZA65_RS09120	0.41	+1.7
1,922,582	+		DZA65_RS09120	0.41	+0.5
1,922,582	+		DZA65_RS09120	0.41	-0.0
1,922,582	+		DZA65_RS09120	0.41	+0.8
1,922,583	-		DZA65_RS09120	0.41	+0.8
1,922,583	-		DZA65_RS09120	0.41	+0.4
1,922,646	+		DZA65_RS09120	0.53	-1.0
1,922,647	-		DZA65_RS09120	0.53	+0.6
1,922,647	-		DZA65_RS09120	0.53	+1.5
1,922,704	+		DZA65_RS09120	0.64	+0.5
1,922,705	-		DZA65_RS09120	0.64	+1.2
1,922,724	+		DZA65_RS09120	0.68	-0.4
1,922,737	+		DZA65_RS09120	0.70	+1.4
1,922,737	+		DZA65_RS09120	0.70	+0.3
1,922,737	+		DZA65_RS09120	0.70	+0.0
1,922,738	-		DZA65_RS09120	0.70	-1.8
1,922,740	-		DZA65_RS09120	0.71	+0.2
1,922,804	+		DZA65_RS09120	0.82	+0.9
1,922,804	+		DZA65_RS09120	0.82	-0.5
1,922,804	+		DZA65_RS09120	0.82	-1.1
1,922,805	-		DZA65_RS09120	0.83	+0.2
1,922,805	-		DZA65_RS09120	0.83	+0.6
1,922,805	-		DZA65_RS09120	0.83	+1.8
1,922,821	-		DZA65_RS09120	0.86	+0.8
1,922,893	+				-0.8
1,922,894	-				+0.2
1,922,896	+				+3.0
1,922,897	-				+1.2
1,922,897	-				-0.2
1,922,897	-				-0.3
1,922,897	-				-0.4
1,922,924	-				-0.1
1,923,028	+				+0.2
1,923,028	+				-0.8
1,923,028	+				+1.1
1,923,028	+				+0.6
1,923,028	+				+0.2
1,923,028	+				+2.0
1,923,028	+				-0.5
1,923,028	+				-0.4
1,923,028	+				+0.5
1,923,029	-				-0.5
1,923,029	-				+0.9
1,923,029	-				+0.8
1,923,029	-				-0.3
1,923,029	-				-0.2
1,923,029	-				-0.3
1,923,029	-				+0.5
1,923,029	-				-0.1
1,923,029	-				-1.3
1,923,029	-				-2.8
1,923,030	+				+0.4
1,923,030	+				+0.2
1,923,031	-				+0.3
1,923,031	-				-1.4
1,923,031	-				+1.6
1,923,060	+				+1.1
1,923,060	+				-0.2
1,923,065	+				+0.9
1,923,070	-				+0.9
1,923,111	+				-1.1
1,923,111	+				+0.0
1,923,111	+				-0.7
1,923,112	-				-0.3
1,923,112	-				-0.2
1,923,112	-				-0.4
1,923,112	-				-0.9
1,923,112	-				-0.7
1,923,112	-				+0.9
1,923,112	-				-0.6
1,923,234	+		DZA65_RS09125	0.16	+1.0
1,923,234	+		DZA65_RS09125	0.16	-1.5
1,923,235	-		DZA65_RS09125	0.16	+0.5
1,923,235	-		DZA65_RS09125	0.16	-1.0
1,923,235	-		DZA65_RS09125	0.16	-0.1
1,923,235	-		DZA65_RS09125	0.16	-1.8
1,923,238	+		DZA65_RS09125	0.16	-0.1
1,923,238	+		DZA65_RS09125	0.16	-1.1
1,923,238	+		DZA65_RS09125	0.16	-2.1
1,923,239	-		DZA65_RS09125	0.16	+0.8
1,923,239	-		DZA65_RS09125	0.16	-0.5
1,923,242	-		DZA65_RS09125	0.17	-0.5
1,923,242	-		DZA65_RS09125	0.17	-0.4
1,923,242	-		DZA65_RS09125	0.17	+0.7
1,923,254	+		DZA65_RS09125	0.18	+1.2
1,923,254	+		DZA65_RS09125	0.18	-0.8
1,923,255	-		DZA65_RS09125	0.18	+1.4
1,923,255	-		DZA65_RS09125	0.18	-0.0
1,923,255	-		DZA65_RS09125	0.18	-0.2
1,923,255	-		DZA65_RS09125	0.18	-0.5
1,923,352	+		DZA65_RS09125	0.28	+0.8
1,923,352	+		DZA65_RS09125	0.28	-0.8
1,923,352	+		DZA65_RS09125	0.28	+1.2
1,923,352	+				+0.2
1,923,352	+		DZA65_RS09125	0.28	+1.8
1,923,352	+		DZA65_RS09125	0.28	-0.5
1,923,353	-		DZA65_RS09125	0.28	+0.1
1,923,365	-		DZA65_RS09125	0.30	+0.9
1,923,365	-		DZA65_RS09125	0.30	-0.7
1,923,365	-		DZA65_RS09125	0.30	-1.1
1,923,396	-		DZA65_RS09125	0.33	-1.4
1,923,396	-		DZA65_RS09125	0.33	-0.4
1,923,566	-		DZA65_RS09125	0.51	-1.2
1,923,611	-		DZA65_RS09125	0.55	-1.2
1,923,653	+		DZA65_RS09125	0.60	+0.9
1,923,676	+		DZA65_RS09125	0.62	-0.1
1,923,676	+		DZA65_RS09125	0.62	+0.2
1,923,677	-		DZA65_RS09125	0.62	+0.0
1,923,677	-		DZA65_RS09125	0.62	+0.2
1,923,752	+		DZA65_RS09125	0.70	+0.6
1,923,752	+		DZA65_RS09125	0.70	+0.3
1,923,753	-		DZA65_RS09125	0.70	-0.1
1,923,753	-		DZA65_RS09125	0.70	+0.8
1,923,794	-		DZA65_RS09125	0.75	+0.1