Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08840

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,866,067	-		DZA65_RS08830	0.80	+0.7
1,866,218	+		DZA65_RS08830	0.88	+1.3
1,866,219	-		DZA65_RS08830	0.88	-0.5
1,866,225	+		DZA65_RS08830	0.88	-1.2
1,866,235	-		DZA65_RS08830	0.89	-0.8
1,866,235	-		DZA65_RS08830	0.89	+0.1
1,866,279	+				+0.5
1,866,279	+				+2.3
1,866,279	+				+0.5
1,866,280	-				-2.6
1,866,284	+				-0.5
1,866,284	+				+0.5
1,866,284	+				-1.0
1,866,285	-				-0.3
1,866,285	-				+0.3
1,866,285	-				-2.3
1,866,285	-				+0.6
1,866,285	-				-2.1
1,866,311	+				+0.4
1,866,311	+				-1.6
1,866,311	+				+1.2
1,866,312	-				+1.0
1,866,312	-				-0.5
1,866,312	-				-0.9
1,866,327	+				-0.2
1,866,327	+				+0.6
1,866,327	+				-0.4
1,866,328	-				+0.6
1,866,330	+				+0.6
1,866,330	+				+0.4
1,866,330	+				+0.6
1,866,330	+				-0.3
1,866,330	+				-0.2
1,866,331	-				-0.5
1,866,331	-				+0.6
1,866,331	-				+1.2
1,866,352	+				-1.8
1,866,353	-				-0.8
1,866,381	+				-0.5
1,866,381	+				+0.1
1,866,382	-				+2.8
1,866,407	+				+0.2
1,866,407	+				+1.6
1,866,407	+				-0.4
1,866,407	+				-0.3
1,866,408	-				+0.8
1,866,408	-				+0.8
1,866,408	-				-0.1
1,866,408	-				-0.8
1,866,417	-				+0.2
1,866,463	+				-0.4
1,866,463	+				-0.8
1,866,463	+				+1.5
1,866,464	-				-0.4
1,866,464	-				+0.0
1,866,464	-				-1.8
1,866,464	-				-0.0
1,866,470	-				-0.1
1,866,487	-				-0.2
1,866,533	-		DZA65_RS08835	0.13	+0.7
1,866,533	-		DZA65_RS08835	0.13	-0.6
1,866,552	+		DZA65_RS08835	0.17	+0.1
1,866,552	+		DZA65_RS08835	0.17	+0.5
1,866,553	-		DZA65_RS08835	0.17	-2.0
1,866,553	-		DZA65_RS08835	0.17	-0.2
1,866,553	-		DZA65_RS08835	0.17	-0.3
1,866,553	-		DZA65_RS08835	0.17	-0.4
1,866,553	-		DZA65_RS08835	0.17	+0.5
1,866,553	-		DZA65_RS08835	0.17	+0.2
1,866,553	-		DZA65_RS08835	0.17	+0.0
1,866,556	+		DZA65_RS08835	0.18	+1.8
1,866,556	+				+0.6
1,866,556	+		DZA65_RS08835	0.18	-1.2
1,866,556	+		DZA65_RS08835	0.18	-1.2
1,866,556	+		DZA65_RS08835	0.18	-0.8
1,866,557	-		DZA65_RS08835	0.18	+1.6
1,866,557	-		DZA65_RS08835	0.18	-2.8
1,866,557	-		DZA65_RS08835	0.18	-0.1
1,866,644	-		DZA65_RS08835	0.34	-0.4
1,866,644	-		DZA65_RS08835	0.34	-0.7
1,866,686	-		DZA65_RS08835	0.42	+1.2
1,866,686	-		DZA65_RS08835	0.42	-0.4
1,866,703	+		DZA65_RS08835	0.46	+0.1
1,866,704	-		DZA65_RS08835	0.46	-0.8
1,866,733	+		DZA65_RS08835	0.51	+1.6
1,866,734	-		DZA65_RS08835	0.51	-0.3
1,866,740	+		DZA65_RS08835	0.53	+0.9
1,866,740	+		DZA65_RS08835	0.53	-0.3
1,866,740	+		DZA65_RS08835	0.53	+0.0
1,866,740	+		DZA65_RS08835	0.53	+1.2
1,866,740	+		DZA65_RS08835	0.53	-0.2
1,866,740	+		DZA65_RS08835	0.53	+1.2
1,866,740	+		DZA65_RS08835	0.53	-1.4
1,866,740	+		DZA65_RS08835	0.53	+1.5
1,866,741	-		DZA65_RS08835	0.53	-0.6
1,866,741	-		DZA65_RS08835	0.53	-0.3
1,866,741	-		DZA65_RS08835	0.53	-2.4
1,866,741	-		DZA65_RS08835	0.53	+0.2
1,866,741	-		DZA65_RS08835	0.53	+0.3
1,866,741	-		DZA65_RS08835	0.53	-1.0
1,866,741	-		DZA65_RS08835	0.53	+1.0
1,866,741	-		DZA65_RS08835	0.53	+0.5
1,866,741	-		DZA65_RS08835	0.53	-0.5
1,866,741	-		DZA65_RS08835	0.53	+0.6
1,866,741	-		DZA65_RS08835	0.53	+0.7
1,866,741	-		DZA65_RS08835	0.53	+0.1
1,866,741	-		DZA65_RS08835	0.53	+0.0
1,866,741	-		DZA65_RS08835	0.53	+0.8
1,866,741	-		DZA65_RS08835	0.53	+0.7
1,866,752	-		DZA65_RS08835	0.55	+1.3
1,866,762	+		DZA65_RS08835	0.57	-0.6
1,866,763	-		DZA65_RS08835	0.57	+0.7
1,866,854	+		DZA65_RS08835	0.74	-0.0
1,866,854	+		DZA65_RS08835	0.74	+0.4
1,866,854	+		DZA65_RS08835	0.74	+0.7
1,866,854	+		DZA65_RS08835	0.74	-1.4
1,866,859	+		DZA65_RS08835	0.75	-0.4
1,866,859	+		DZA65_RS08835	0.75	-0.8
1,866,881	+		DZA65_RS08835	0.79	+0.4
1,866,882	-		DZA65_RS08835	0.80	+1.6
1,866,882	-		DZA65_RS08835	0.80	+0.4
1,866,921	+		DZA65_RS08835	0.87	-0.8
1,866,921	+		DZA65_RS08835	0.87	+0.2
1,866,921	+		DZA65_RS08835	0.87	-1.4
1,866,922	-		DZA65_RS08835	0.87	-0.9
1,866,922	-		DZA65_RS08835	0.87	+0.0
1,866,930	+		DZA65_RS08835	0.89	-1.0
1,866,930	+		DZA65_RS08835	0.89	-1.8
1,866,956	+				+1.2
1,866,956	+				-2.8
1,866,956	+				+0.8
1,866,956	+				-0.8
1,866,956	+				-1.2
1,866,956	+				-0.6
1,866,957	-				+0.6
1,866,957	-				-0.0
1,866,957	-				-1.0
1,866,957	-				-2.9
1,866,957	-				+1.2
1,866,976	-				-0.8
1,866,976	-				+2.8
1,867,006	-				-0.4
1,867,089	+		DZA65_RS08840	0.12	-0.8
1,867,135	-		DZA65_RS08840	0.17	-1.4
1,867,185	+		DZA65_RS08840	0.22	+1.8
1,867,185	+		DZA65_RS08840	0.22	+2.5
1,867,230	+		DZA65_RS08840	0.28	-1.2
1,867,231	-		DZA65_RS08840	0.28	+0.4
1,867,231	-		DZA65_RS08840	0.28	+1.0
1,867,326	-		DZA65_RS08840	0.39	-0.5
1,867,354	+		DZA65_RS08840	0.42	-0.9
1,867,374	+		DZA65_RS08840	0.44	-0.5
1,867,386	+		DZA65_RS08840	0.45	+0.4
1,867,407	-		DZA65_RS08840	0.48	+1.0
1,867,430	-		DZA65_RS08840	0.50	-1.0
1,867,456	-		DZA65_RS08840	0.53	-0.1
1,867,458	+		DZA65_RS08840	0.54	-0.2
1,867,461	-		DZA65_RS08840	0.54	+0.7
1,867,461	-		DZA65_RS08840	0.54	-0.8
1,867,518	+		DZA65_RS08840	0.61	+0.6
1,867,518	+		DZA65_RS08840	0.61	-0.6
1,867,571	-		DZA65_RS08840	0.67	+1.4
1,867,572	+		DZA65_RS08840	0.67	+0.8
1,867,581	+		DZA65_RS08840	0.68	-0.4
1,867,586	-		DZA65_RS08840	0.68	-0.9
1,867,599	+		DZA65_RS08840	0.70	+0.7
1,867,611	+		DZA65_RS08840	0.71	+0.6
1,867,663	-		DZA65_RS08840	0.77	-1.9
1,867,705	+		DZA65_RS08840	0.82	-0.6
1,867,705	+		DZA65_RS08840	0.82	+0.2
1,867,707	+		DZA65_RS08840	0.82	+0.5
1,867,727	-		DZA65_RS08840	0.84	-0.8
1,867,748	-		DZA65_RS08840	0.87	+0.3
1,867,961	+		DZA65_RS08845	0.18	-0.1
1,868,034	+		DZA65_RS08845	0.36	-0.5
1,868,034	+		DZA65_RS08845	0.36	-2.1
1,868,047	+		DZA65_RS08845	0.40	-1.0
1,868,047	+		DZA65_RS08845	0.40	-0.3
1,868,048	-		DZA65_RS08845	0.40	-0.7
1,868,068	-		DZA65_RS08845	0.45	+0.4
1,868,091	-		DZA65_RS08845	0.50	-1.5
1,868,136	+		DZA65_RS08845	0.61	+1.1
1,868,276	+				+0.6
1,868,276	+				-3.1
1,868,277	-				-0.1
1,868,277	-				-1.2
1,868,424	+				-0.4
1,868,424	+				+0.6
1,868,424	+				+0.4
1,868,425	-				+0.4
1,868,430	+				-0.6
1,868,430	+				-1.6
1,868,431	-				-0.2
1,868,431	-				+0.0
1,868,431	-				+0.0
1,868,431	-				+1.2
1,868,431	-				-0.9
1,868,431	-				-0.8
1,868,431	-				-0.9
1,868,431	-				+0.2
1,868,431	-				-0.3
1,868,553	+		DZA65_RS08850	0.21	-0.5
1,868,554	-		DZA65_RS08850	0.21	-1.0
1,868,555	+		DZA65_RS08850	0.21	-1.2
1,868,555	+		DZA65_RS08850	0.21	+0.9
1,868,555	+		DZA65_RS08850	0.21	-0.4
1,868,555	+		DZA65_RS08850	0.21	-0.3
1,868,555	+		DZA65_RS08850	0.21	+0.0
1,868,555	+		DZA65_RS08850	0.21	-2.1
1,868,555	+		DZA65_RS08850	0.21	-0.3
1,868,555	+		DZA65_RS08850	0.21	-0.3
1,868,556	-		DZA65_RS08850	0.21	+0.2
1,868,556	-		DZA65_RS08850	0.21	-0.7
1,868,556	-		DZA65_RS08850	0.21	+0.9
1,868,556	-		DZA65_RS08850	0.21	-1.2
1,868,556	-		DZA65_RS08850	0.21	+0.8
1,868,569	+		DZA65_RS08850	0.23	-0.1
1,868,595	+		DZA65_RS08850	0.28	-0.4
1,868,622	-		DZA65_RS08850	0.32	-0.9
1,868,631	+		DZA65_RS08850	0.34	+0.6
1,868,631	+		DZA65_RS08850	0.34	+1.6
1,868,632	-		DZA65_RS08850	0.34	+0.4
1,868,685	+		DZA65_RS08850	0.43	-0.0
1,868,685	+		DZA65_RS08850	0.43	-0.2
1,868,686	-		DZA65_RS08850	0.43	+1.4
1,868,826	+		DZA65_RS08850	0.67	+1.1