Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08615

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,822,271	-		DZA65_RS08610	0.40	+0.6
1,822,271	-		DZA65_RS08610	0.40	-0.3
1,822,411	-		DZA65_RS08610	0.50	-2.8
1,822,515	-		DZA65_RS08610	0.57	+0.5
1,822,565	+		DZA65_RS08610	0.60	+0.5
1,822,566	-		DZA65_RS08610	0.61	-1.5
1,822,567	+				-0.8
1,822,567	+		DZA65_RS08610	0.61	-2.2
1,822,567	+		DZA65_RS08610	0.61	+0.2
1,822,668	-		DZA65_RS08610	0.68	+0.5
1,822,709	+		DZA65_RS08610	0.71	-2.1
1,822,709	+		DZA65_RS08610	0.71	+0.7
1,822,709	+		DZA65_RS08610	0.71	+0.2
1,822,709	+		DZA65_RS08610	0.71	+1.0
1,822,710	-		DZA65_RS08610	0.71	-1.3
1,822,710	-		DZA65_RS08610	0.71	-0.2
1,822,710	-		DZA65_RS08610	0.71	-2.6
1,822,710	-		DZA65_RS08610	0.71	-0.6
1,822,710	-		DZA65_RS08610	0.71	-0.1
1,822,710	-		DZA65_RS08610	0.71	+0.4
1,822,715	+		DZA65_RS08610	0.71	+0.6
1,822,715	+		DZA65_RS08610	0.71	-0.3
1,822,715	+		DZA65_RS08610	0.71	-1.1
1,822,715	+		DZA65_RS08610	0.71	+0.7
1,822,721	+		DZA65_RS08610	0.71	+0.2
1,822,735	-		DZA65_RS08610	0.72	+0.4
1,822,789	+		DZA65_RS08610	0.76	-1.1
1,822,789	+		DZA65_RS08610	0.76	+1.5
1,822,790	-		DZA65_RS08610	0.76	+0.2
1,822,804	-		DZA65_RS08610	0.77	-0.8
1,822,804	-		DZA65_RS08610	0.77	-1.6
1,822,952	+		DZA65_RS08610	0.87	+0.2
1,822,958	-		DZA65_RS08610	0.88	+1.9
1,823,129	+				+1.3
1,823,198	+				+0.2
1,823,221	+				-1.3
1,823,297	+				-0.1
1,823,297	+				-0.3
1,823,297	+				+1.4
1,823,297	+				-0.8
1,823,298	-				-1.1
1,823,298	-				-0.9
1,823,452	+		DZA65_RS08615	0.18	+0.4
1,823,452	+		DZA65_RS08615	0.18	+0.2
1,823,453	-		DZA65_RS08615	0.18	-2.1
1,823,650	-		DZA65_RS08615	0.33	+0.7
1,823,682	+		DZA65_RS08615	0.35	+0.0
1,823,682	+		DZA65_RS08615	0.35	+0.1
1,823,682	+		DZA65_RS08615	0.35	+2.8
1,823,682	+		DZA65_RS08615	0.35	+1.1
1,823,682	+		DZA65_RS08615	0.35	-1.5
1,823,683	-		DZA65_RS08615	0.35	-1.9
1,823,683	-		DZA65_RS08615	0.35	+0.2
1,823,683	-		DZA65_RS08615	0.35	-1.5
1,823,764	-		DZA65_RS08615	0.41	-0.9
1,823,781	+		DZA65_RS08615	0.42	+1.2
1,823,782	-		DZA65_RS08615	0.42	-1.6
1,823,782	-		DZA65_RS08615	0.42	+0.1
1,823,782	-		DZA65_RS08615	0.42	-2.0
1,823,832	+		DZA65_RS08615	0.46	-0.3
1,823,872	+		DZA65_RS08615	0.49	-2.6
1,823,872	+		DZA65_RS08615	0.49	-0.7
1,823,873	-		DZA65_RS08615	0.49	-0.4
1,823,873	-		DZA65_RS08615	0.49	-0.4
1,823,873	-		DZA65_RS08615	0.49	+1.8
1,823,917	-		DZA65_RS08615	0.52	-1.6
1,824,022	-		DZA65_RS08615	0.60	-0.3
1,824,066	+		DZA65_RS08615	0.63	+0.2
1,824,111	+		DZA65_RS08615	0.66	-1.8
1,824,111	+		DZA65_RS08615	0.66	+1.5
1,824,111	+		DZA65_RS08615	0.66	+1.4
1,824,111	+		DZA65_RS08615	0.66	-0.6
1,824,111	+		DZA65_RS08615	0.66	+0.4
1,824,111	+		DZA65_RS08615	0.66	-1.2
1,824,112	-		DZA65_RS08615	0.67	-2.1
1,824,112	-		DZA65_RS08615	0.67	+0.2
1,824,112	-		DZA65_RS08615	0.67	+0.8
1,824,112	-		DZA65_RS08615	0.67	+1.5
1,824,112	-		DZA65_RS08615	0.67	+0.8
1,824,112	-		DZA65_RS08615	0.67	-0.2
1,824,112	-		DZA65_RS08615	0.67	+0.0
1,824,112	-		DZA65_RS08615	0.67	-1.3
1,824,112	-		DZA65_RS08615	0.67	-0.8
1,824,139	-		DZA65_RS08615	0.68	-1.8
1,824,139	-		DZA65_RS08615	0.68	-0.3
1,824,256	-		DZA65_RS08615	0.77	-0.2
1,824,297	+		DZA65_RS08615	0.80	+0.4
1,824,297	+		DZA65_RS08615	0.80	-2.1
1,824,297	+		DZA65_RS08615	0.80	-0.4
1,824,297	+		DZA65_RS08615	0.80	-0.6
1,824,319	-		DZA65_RS08615	0.82	+2.2
1,824,347	+		DZA65_RS08615	0.84	-0.4
1,824,348	-		DZA65_RS08615	0.84	+0.2
1,824,348	-		DZA65_RS08615	0.84	+0.8
1,824,362	+		DZA65_RS08615	0.85	-0.7
1,824,408	-		DZA65_RS08615	0.88	+0.9
1,824,592	-				-0.4
1,824,607	+				+1.0
1,824,607	+				+0.1
1,824,608	-				-0.3
1,824,805	+		DZA65_RS08620	0.23	-0.1
1,824,805	+		DZA65_RS08620	0.23	+1.2
1,824,805	+		DZA65_RS08620	0.23	-1.2
1,824,805	+		DZA65_RS08620	0.23	-0.2
1,824,805	+		DZA65_RS08620	0.23	-0.8
1,824,805	+		DZA65_RS08620	0.23	-0.3
1,824,806	-		DZA65_RS08620	0.23	+0.6
1,824,806	-		DZA65_RS08620	0.23	-0.3
1,824,806	-		DZA65_RS08620	0.23	+0.5
1,824,808	+		DZA65_RS08620	0.23	-0.5
1,824,808	+		DZA65_RS08620	0.23	+1.9
1,824,808	+		DZA65_RS08620	0.23	-0.0
1,824,808	+		DZA65_RS08620	0.23	-0.3
1,824,809	-		DZA65_RS08620	0.23	-1.3
1,824,809	-		DZA65_RS08620	0.23	-0.2
1,824,809	-		DZA65_RS08620	0.23	-0.9
1,824,865	+		DZA65_RS08620	0.29	+0.6
1,824,898	+		DZA65_RS08620	0.33	+0.7
1,824,898	+		DZA65_RS08620	0.33	+1.1
1,824,899	-		DZA65_RS08620	0.33	-1.0
1,825,075	+		DZA65_RS08620	0.52	-0.5
1,825,076	-		DZA65_RS08620	0.52	+0.8
1,825,076	-		DZA65_RS08620	0.52	+0.6
1,825,076	-		DZA65_RS08620	0.52	-0.6
1,825,076	-		DZA65_RS08620	0.52	+1.2
1,825,076	-		DZA65_RS08620	0.52	-0.0
1,825,076	-		DZA65_RS08620	0.52	-1.3
1,825,076	-		DZA65_RS08620	0.52	-1.6
1,825,076	-		DZA65_RS08620	0.52	-0.5
1,825,078	+		DZA65_RS08620	0.52	+0.2
1,825,078	+		DZA65_RS08620	0.52	-0.8
1,825,079	-		DZA65_RS08620	0.52	-2.1
1,825,174	+		DZA65_RS08620	0.62	-0.5
1,825,174	+		DZA65_RS08620	0.62	-1.9
1,825,175	-		DZA65_RS08620	0.62	-1.1
1,825,175	-		DZA65_RS08620	0.62	-0.5
1,825,175	-		DZA65_RS08620	0.62	-0.3
1,825,262	-		DZA65_RS08620	0.72	+0.8
1,825,262	-		DZA65_RS08620	0.72	+0.9
1,825,264	-		DZA65_RS08620	0.72	+0.1
1,825,280	-		DZA65_RS08620	0.74	-1.2
1,825,547	+				+0.8
1,825,548	-				+0.7