Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08230

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,728,984	-				-0.7
1,729,016	-				+0.7
1,729,041	+				+1.6
1,729,042	-				+1.0
1,729,042	-				+3.0
1,729,099	-				-2.3
1,729,099	-				-0.7
1,729,099	-				-1.5
1,729,107	+				-1.9
1,729,108	-				-0.3
1,729,108	-				+0.1
1,729,108	-				+0.3
1,729,109	+				-0.2
1,729,109	+				+1.3
1,729,109	+				-1.4
1,729,109	+				-1.6
1,729,109	+				+1.7
1,729,109	+				-1.1
1,729,109	+				+0.6
1,729,109	+				-0.7
1,729,110	-				+0.5
1,729,110	-				-0.7
1,729,110	-				-0.1
1,729,110	-				-0.4
1,729,110	-				+0.5
1,729,116	+				-1.6
1,729,116	+				-0.3
1,729,117	-				-0.9
1,729,168	+				+1.1
1,729,168	+				-0.3
1,729,168	+				+0.4
1,729,168	+				+0.6
1,729,168	+				-0.9
1,729,168	+				-1.3
1,729,168	+				-1.3
1,729,169	-				+0.3
1,729,169	-				-0.7
1,729,169	-				+0.3
1,729,169	-				-0.7
1,729,169	-				-1.5
1,729,169	-				+0.1
1,729,169	-				-0.6
1,729,169	-				+2.5
1,729,169	-				-0.7
1,729,169	-				-0.3
1,729,243	+				-1.0
1,729,243	+				-0.8
1,729,243	+				-2.1
1,729,243	+				-0.3
1,729,244	-				-1.7
1,729,244	-				-1.1
1,729,244	-				+0.5
1,729,244	-				-0.2
1,729,244	-				-0.3
1,729,245	+				-2.3
1,729,245	+				-0.3
1,729,245	+				+1.0
1,729,245	+				-0.7
1,729,245	+				-0.6
1,729,246	-				-0.5
1,729,246	-				+0.3
1,729,246	-				-1.7
1,729,246	-				-1.0
1,729,246	-				-0.1
1,729,246	-				+0.6
1,729,264	+				+0.7
1,729,264	+				+0.8
1,729,266	+				-0.3
1,729,266	+				+0.3
1,729,266	+				-1.6
1,729,266	+				+1.3
1,729,267	-				-0.0
1,729,267	-				-2.1
1,729,267	-				+0.9
1,729,270	+				-1.9
1,729,270	+				-0.2
1,729,271	-				+1.3
1,729,271	-				+0.1
1,729,282	-				+0.1
1,729,293	-				-1.3
1,729,294	+				-0.6
1,729,450	+		DZA65_RS08225	0.12	-1.7
1,729,450	+		DZA65_RS08225	0.12	-0.8
1,729,451	-		DZA65_RS08225	0.12	+0.8
1,729,503	+				-0.7
1,729,503	+		DZA65_RS08225	0.23	+0.0
1,729,504	-				+2.6
1,729,504	-		DZA65_RS08225	0.23	-0.7
1,729,504	-		DZA65_RS08225	0.23	+0.6
1,729,504	-		DZA65_RS08225	0.23	+1.0
1,729,504	-		DZA65_RS08225	0.23	-1.3
1,729,505	+		DZA65_RS08225	0.23	+0.7
1,729,505	+		DZA65_RS08225	0.23	-0.4
1,729,505	+		DZA65_RS08225	0.23	-1.7
1,729,505	+		DZA65_RS08225	0.23	-0.2
1,729,505	+		DZA65_RS08225	0.23	+0.3
1,729,505	+		DZA65_RS08225	0.23	-1.2
1,729,505	+		DZA65_RS08225	0.23	-1.6
1,729,505	+		DZA65_RS08225	0.23	+0.3
1,729,505	+		DZA65_RS08225	0.23	-0.5
1,729,505	+		DZA65_RS08225	0.23	-0.4
1,729,505	+		DZA65_RS08225	0.23	-0.5
1,729,505	+		DZA65_RS08225	0.23	+1.0
1,729,506	-		DZA65_RS08225	0.23	-1.1
1,729,506	-		DZA65_RS08225	0.23	+0.7
1,729,506	-		DZA65_RS08225	0.23	+0.5
1,729,506	-		DZA65_RS08225	0.23	-0.6
1,729,506	-		DZA65_RS08225	0.23	-1.6
1,729,506	-		DZA65_RS08225	0.23	-0.5
1,729,506	-		DZA65_RS08225	0.23	-1.0
1,729,506	-		DZA65_RS08225	0.23	-0.3
1,729,506	-		DZA65_RS08225	0.23	+1.0
1,729,506	-		DZA65_RS08225	0.23	-0.0
1,729,506	-		DZA65_RS08225	0.23	-0.9
1,729,506	-		DZA65_RS08225	0.23	+0.3
1,729,506	-		DZA65_RS08225	0.23	-1.1
1,729,506	-		DZA65_RS08225	0.23	+0.3
1,729,506	-		DZA65_RS08225	0.23	-1.3
1,729,506	-		DZA65_RS08225	0.23	-1.2
1,729,506	-		DZA65_RS08225	0.23	-1.2
1,729,506	-		DZA65_RS08225	0.23	-1.9
1,729,506	-		DZA65_RS08225	0.23	+0.7
1,729,506	-		DZA65_RS08225	0.23	-1.3
1,729,507	+		DZA65_RS08225	0.23	+1.3
1,729,507	+		DZA65_RS08225	0.23	-1.7
1,729,507	+		DZA65_RS08225	0.23	-1.7
1,729,507	+		DZA65_RS08225	0.23	-0.5
1,729,507	+		DZA65_RS08225	0.23	-1.1
1,729,507	+		DZA65_RS08225	0.23	+0.3
1,729,507	+		DZA65_RS08225	0.23	-0.2
1,729,508	-		DZA65_RS08225	0.24	+0.3
1,729,508	-		DZA65_RS08225	0.24	-0.7
1,729,508	-		DZA65_RS08225	0.24	-0.5
1,729,508	-		DZA65_RS08225	0.24	-2.3
1,729,508	-		DZA65_RS08225	0.24	-0.5
1,729,508	-		DZA65_RS08225	0.24	+0.3
1,729,560	+		DZA65_RS08225	0.34	+0.3
1,729,584	+		DZA65_RS08225	0.39	-1.7
1,729,714	+		DZA65_RS08225	0.66	+1.3
1,729,715	-		DZA65_RS08225	0.66	+0.1
1,729,715	-		DZA65_RS08225	0.66	+0.6
1,729,715	-		DZA65_RS08225	0.66	-0.2
1,729,769	-		DZA65_RS08225	0.77	-0.3
1,729,769	-		DZA65_RS08225	0.77	+0.5
1,729,854	+				-0.1
1,729,854	+				-0.2
1,729,855	-				-1.2
1,729,929	+				+0.3
1,729,929	+				+1.3
1,729,929	+				+0.1
1,729,932	+				+1.5
1,729,932	+				+0.3
1,729,932	+				+0.3
1,729,932	+				-0.4
1,729,932	+				-0.0
1,729,933	-				-0.7
1,729,966	+				-3.6
1,729,967	-				-0.7
1,729,991	+				-0.5
1,729,991	+				+0.3
1,729,992	-				-1.0
1,729,992	-				+0.3
1,730,097	-		DZA65_RS08230	0.16	-1.1
1,730,109	+		DZA65_RS08230	0.17	+0.4
1,730,110	-		DZA65_RS08230	0.17	+2.1
1,730,110	-		DZA65_RS08230	0.17	+1.0
1,730,110	-		DZA65_RS08230	0.17	-0.1
1,730,148	-		DZA65_RS08230	0.21	+1.3
1,730,171	+		DZA65_RS08230	0.24	-0.1
1,730,171	+		DZA65_RS08230	0.24	-1.0
1,730,171	+		DZA65_RS08230	0.24	-1.6
1,730,185	+		DZA65_RS08230	0.25	+0.7
1,730,185	+		DZA65_RS08230	0.25	+0.6
1,730,186	-		DZA65_RS08230	0.25	-0.3
1,730,317	-		DZA65_RS08230	0.39	-0.1
1,730,359	-		DZA65_RS08230	0.44	-0.3
1,730,494	+		DZA65_RS08230	0.58	+0.3
1,730,561	+		DZA65_RS08230	0.65	+0.1
1,730,561	+		DZA65_RS08230	0.65	+0.1
1,730,562	-		DZA65_RS08230	0.65	-1.5
1,730,587	+		DZA65_RS08230	0.68	+0.3
1,730,670	+		DZA65_RS08230	0.77	+1.8
1,730,671	-		DZA65_RS08230	0.77	+1.5
1,730,677	+		DZA65_RS08230	0.78	+0.3
1,730,678	-		DZA65_RS08230	0.78	+0.7
1,730,678	-		DZA65_RS08230	0.78	-0.9
1,730,678	-		DZA65_RS08230	0.78	-0.9
1,730,682	+		DZA65_RS08230	0.78	+0.8
1,730,682	+		DZA65_RS08230	0.78	+1.3
1,730,885	+				-0.9
1,730,886	-				-2.2
1,730,888	+				-1.3
1,730,888	+				-1.0
1,730,889	-				-0.9
1,730,889	-				+0.9
1,730,889	-				-1.4
1,730,898	-				-0.4
1,730,898	-				-0.4
1,730,943	+				-2.1
1,730,943	+				-1.9
1,730,943	+				-1.3
1,730,943	+				-0.6
1,730,944	-				-0.7
1,730,959	+				-1.0
1,730,974	+				+1.0
1,730,974	+				+0.1
1,730,974	+				-0.5
1,730,974	+				-1.0
1,730,975	-				-0.4
1,730,975	-				-1.1
1,730,975	-				+1.0
1,730,999	+				+0.3
1,731,000	-				-0.7
1,731,005	+				+0.3
1,731,024	+				+1.8
1,731,024	+				-0.6
1,731,025	-				-1.4
1,731,025	-				-2.3
1,731,025	-				+0.1
1,731,025	-				+1.3
1,731,025	-				-0.5
1,731,025	-				+1.1
1,731,027	+				+0.3
1,731,027	+				+0.3
1,731,028	-				-0.4
1,731,038	+		DZA65_RS08235	0.10	-0.9
1,731,038	+		DZA65_RS08235	0.10	-1.6
1,731,044	+		DZA65_RS08235	0.11	+0.4
1,731,044	+		DZA65_RS08235	0.11	+0.7
1,731,045	-		DZA65_RS08235	0.12	-0.1
1,731,045	-		DZA65_RS08235	0.12	-1.9
1,731,045	-		DZA65_RS08235	0.12	-0.2
1,731,045	-		DZA65_RS08235	0.12	-0.7
1,731,065	+		DZA65_RS08235	0.15	+0.8
1,731,065	+		DZA65_RS08235	0.15	-0.3
1,731,065	+		DZA65_RS08235	0.15	-0.3
1,731,065	+		DZA65_RS08235	0.15	+0.4
1,731,066	-		DZA65_RS08235	0.15	-0.3
1,731,066	-		DZA65_RS08235	0.15	-0.7
1,731,066	-		DZA65_RS08235	0.15	-1.3
1,731,068	+		DZA65_RS08235	0.15	+0.4
1,731,068	+		DZA65_RS08235	0.15	-0.7
1,731,068	+		DZA65_RS08235	0.15	-0.5
1,731,069	-		DZA65_RS08235	0.15	+0.7
1,731,069	-		DZA65_RS08235	0.15	-0.6
1,731,069	-		DZA65_RS08235	0.15	-0.0
1,731,075	+		DZA65_RS08235	0.16	+0.3
1,731,076	-		DZA65_RS08235	0.17	-2.3
1,731,168	+		DZA65_RS08235	0.31	-0.4
1,731,168	+		DZA65_RS08235	0.31	+0.5
1,731,168	+		DZA65_RS08235	0.31	+0.8
1,731,169	-		DZA65_RS08235	0.31	-0.4
1,731,173	+		DZA65_RS08235	0.32	-1.6
1,731,173	+		DZA65_RS08235	0.32	+0.8
1,731,173	+		DZA65_RS08235	0.32	+0.3
1,731,173	+		DZA65_RS08235	0.32	+0.0
1,731,174	-		DZA65_RS08235	0.32	-0.7
1,731,174	-		DZA65_RS08235	0.32	-0.3
1,731,174	-		DZA65_RS08235	0.32	-1.1
1,731,174	-		DZA65_RS08235	0.32	-0.4
1,731,177	+		DZA65_RS08235	0.33	+1.5
1,731,177	+		DZA65_RS08235	0.33	-1.2
1,731,178	-		DZA65_RS08235	0.33	-2.1
1,731,178	-		DZA65_RS08235	0.33	-0.1
1,731,211	+		DZA65_RS08235	0.38	+0.3
1,731,340	+		DZA65_RS08235	0.59	-0.5
1,731,341	-		DZA65_RS08235	0.59	-1.3
1,731,350	+		DZA65_RS08235	0.60	-2.1
1,731,439	+		DZA65_RS08235	0.75	-0.2
1,731,445	+		DZA65_RS08235	0.76	-0.5
1,731,445	+		DZA65_RS08235	0.76	+0.5
1,731,445	+		DZA65_RS08235	0.76	-0.5
1,731,445	+		DZA65_RS08235	0.76	+0.1
1,731,446	-		DZA65_RS08235	0.76	-2.3
1,731,446	-		DZA65_RS08235	0.76	-0.7
1,731,446	-		DZA65_RS08235	0.76	+0.7
1,731,458	+		DZA65_RS08235	0.78	-0.0
1,731,458	+		DZA65_RS08235	0.78	-2.1
1,731,459	-		DZA65_RS08235	0.78	-0.1
1,731,459	-		DZA65_RS08235	0.78	+0.6
1,731,470	+		DZA65_RS08235	0.80	-1.3
1,731,471	-		DZA65_RS08235	0.80	-0.1
1,731,505	+		DZA65_RS08235	0.85	+0.3
1,731,592	-				-0.4
1,731,598	+				-1.6
1,731,604	+				-2.1
1,731,604	+				-0.6
1,731,670	-				+0.6
1,731,735	-				-0.0
1,731,745	-				+1.3
1,731,752	+				-0.1
1,731,765	-				-1.1
1,731,784	+				-1.6
1,731,784	+				-0.2
1,731,784	+				+0.3
1,731,784	+				-0.5
1,731,784	+				+1.3
1,731,784	+				-0.1
1,731,785	-				+0.7
1,731,785	-				+0.1
1,731,785	-				-1.3
1,731,785	-				+0.5
1,731,785	-				-0.2
1,731,785	-				+0.9
1,731,785	-				+2.4
1,731,798	+				-0.9
1,731,853	+				-1.7