Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07855

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,637,045	-				+0.3
1,637,045	-				+2.0
1,637,071	+				-0.4
1,637,071	+				-1.2
1,637,071	+				+0.3
1,637,071	+				-1.7
1,637,071	+				-0.1
1,637,071	+				-0.5
1,637,071	+				-1.3
1,637,072	-				+1.1
1,637,072	-				-2.6
1,637,072	-				+0.3
1,637,072	-				-0.3
1,637,072	-				-0.2
1,637,072	-				+0.4
1,637,072	-				+2.1
1,637,072	-				+0.4
1,637,072	-				-2.5
1,637,073	+				+1.3
1,637,074	-				-2.0
1,637,285	+		DZA65_RS07850	0.23	-2.0
1,637,285	+		DZA65_RS07850	0.23	-0.3
1,637,285	+		DZA65_RS07850	0.23	+0.9
1,637,286	-		DZA65_RS07850	0.23	+1.3
1,637,286	-		DZA65_RS07850	0.23	-0.1
1,637,286	-		DZA65_RS07850	0.23	+0.7
1,637,362	+		DZA65_RS07850	0.31	-0.5
1,637,363	-		DZA65_RS07850	0.31	-2.3
1,637,692	+		DZA65_RS07850	0.66	-0.0
1,637,692	+		DZA65_RS07850	0.66	+1.9
1,637,692	+		DZA65_RS07850	0.66	-0.4
1,637,692	+		DZA65_RS07850	0.66	-1.2
1,637,693	-		DZA65_RS07850	0.66	+0.4
1,637,869	+		DZA65_RS07850	0.84	+0.3
1,637,938	-				+0.7
1,638,010	+				-1.0
1,638,010	+				+0.3
1,638,010	+				-0.1
1,638,010	+				-0.3
1,638,010	+				-0.3
1,638,011	-				-0.5
1,638,011	-				-0.1
1,638,011	-				-1.7
1,638,011	-				+0.6
1,638,011	-				-0.1
1,638,032	-				+1.3
1,638,042	-				+0.2
1,638,042	-				-0.0
1,638,076	+				+1.3
1,638,076	+				+0.6
1,638,076	+				-1.3
1,638,076	+				-0.0
1,638,076	+				-0.7
1,638,076	+				+0.0
1,638,076	+				-0.5
1,638,076	+				+0.1
1,638,076	+				-0.4
1,638,076	+				-0.2
1,638,077	-				+0.6
1,638,077	-				+0.1
1,638,077	-				+0.2
1,638,077	-				-1.7
1,638,085	+				-2.5
1,638,085	+				+0.0
1,638,085	+				-0.1
1,638,085	+				+1.9
1,638,085	+				+0.4
1,638,085	+				+1.8
1,638,086	-				+0.3
1,638,086	-				-0.1
1,638,086	-				-0.0
1,638,086	-				-2.1
1,638,086	-				-0.5
1,638,178	-				-0.8
1,638,259	-		DZA65_RS07855	0.11	-2.3
1,638,265	+		DZA65_RS07855	0.12	-0.1
1,638,265	+		DZA65_RS07855	0.12	-1.5
1,638,266	-		DZA65_RS07855	0.12	-0.0
1,638,334	+		DZA65_RS07855	0.15	-0.1
1,638,403	+		DZA65_RS07855	0.18	-2.5
1,638,403	+		DZA65_RS07855	0.18	-1.1
1,638,403	+		DZA65_RS07855	0.18	-0.6
1,638,404	-		DZA65_RS07855	0.18	+0.9
1,638,527	+		DZA65_RS07855	0.24	+0.2
1,638,616	-		DZA65_RS07855	0.29	+0.3
1,638,616	-		DZA65_RS07855	0.29	-1.0
1,638,820	+		DZA65_RS07855	0.39	-0.9
1,638,820	+		DZA65_RS07855	0.39	+0.7
1,638,821	-		DZA65_RS07855	0.39	-1.0
1,638,824	+		DZA65_RS07855	0.39	-0.3
1,638,825	-		DZA65_RS07855	0.39	+0.3
1,638,825	-		DZA65_RS07855	0.39	-0.6
1,638,825	-		DZA65_RS07855	0.39	+0.7
1,638,825	-		DZA65_RS07855	0.39	-1.3
1,638,961	+		DZA65_RS07855	0.46	+0.7
1,638,961	+		DZA65_RS07855	0.46	-0.1
1,638,961	+		DZA65_RS07855	0.46	-0.5
1,638,965	+		DZA65_RS07855	0.46	-0.9
1,638,965	+		DZA65_RS07855	0.46	+0.6
1,638,965	+		DZA65_RS07855	0.46	+0.6
1,638,965	+		DZA65_RS07855	0.46	-0.9
1,638,965	+		DZA65_RS07855	0.46	-0.0
1,638,965	+		DZA65_RS07855	0.46	+0.1
1,638,965	+		DZA65_RS07855	0.46	-1.1
1,638,965	+		DZA65_RS07855	0.46	-1.3
1,638,966	-		DZA65_RS07855	0.46	-1.8
1,638,966	-		DZA65_RS07855	0.46	-0.3
1,638,966	-		DZA65_RS07855	0.46	+0.6
1,638,966	-		DZA65_RS07855	0.46	-1.0
1,638,966	-		DZA65_RS07855	0.46	-0.4
1,638,966	-		DZA65_RS07855	0.46	-0.9
1,638,966	-		DZA65_RS07855	0.46	-0.4
1,638,966	-		DZA65_RS07855	0.46	+1.4
1,638,966	-		DZA65_RS07855	0.46	-0.9
1,638,966	-		DZA65_RS07855	0.46	-1.4
1,639,024	+		DZA65_RS07855	0.49	+0.1
1,639,024	+		DZA65_RS07855	0.49	-1.9
1,639,025	-		DZA65_RS07855	0.49	+0.4
1,639,025	-		DZA65_RS07855	0.49	-0.0
1,639,135	+		DZA65_RS07855	0.54	+1.4
1,639,136	-		DZA65_RS07855	0.54	-0.4
1,639,174	+		DZA65_RS07855	0.56	+1.7
1,639,294	-		DZA65_RS07855	0.62	-1.7
1,639,489	+		DZA65_RS07855	0.72	-0.5
1,639,546	+		DZA65_RS07855	0.74	-0.7
1,639,546	+		DZA65_RS07855	0.74	+0.8
1,639,547	-		DZA65_RS07855	0.74	-0.0
1,639,547	-		DZA65_RS07855	0.74	-0.1
1,639,547	-		DZA65_RS07855	0.74	-1.0
1,639,547	-		DZA65_RS07855	0.74	+0.0
1,639,601	-		DZA65_RS07855	0.77	-0.3
1,639,601	-		DZA65_RS07855	0.77	-2.5
1,639,639	+		DZA65_RS07855	0.79	-2.3
1,639,639	+		DZA65_RS07855	0.79	+1.9
1,639,639	+		DZA65_RS07855	0.79	-0.6
1,639,742	-		DZA65_RS07855	0.84	-1.3
1,639,753	+		DZA65_RS07855	0.84	-0.5
1,639,753	+		DZA65_RS07855	0.84	+0.4
1,639,754	-		DZA65_RS07855	0.85	+1.6
1,639,754	-		DZA65_RS07855	0.85	-0.1
1,639,784	+		DZA65_RS07855	0.86	-0.1
1,639,785	-		DZA65_RS07855	0.86	+0.5
1,639,785	-		DZA65_RS07855	0.86	+0.5
1,639,796	+		DZA65_RS07855	0.87	-0.7
1,639,796	+		DZA65_RS07855	0.87	+0.3
1,639,948	-				-0.7
1,639,983	+				-0.1
1,639,983	+				-0.3
1,639,983	+				+0.7
1,639,983	+				-2.7
1,639,984	-				-0.9
1,639,984	-				-0.2
1,639,984	-				+1.6
1,639,984	-				-0.1
1,639,984	-				-0.9
1,639,984	-				-0.3
1,639,984	-				+0.4
1,639,984	-				+0.8
1,640,008	+				+0.9
1,640,008	+				-0.7
1,640,009	-				-1.2
1,640,009	-				-1.2
1,640,069	+				-0.3
1,640,070	-				+0.2
1,640,187	+		DZA65_RS07860	0.19	+0.3
1,640,187	+		DZA65_RS07860	0.19	-0.1
1,640,187	+		DZA65_RS07860	0.19	-0.7
1,640,187	+		DZA65_RS07860	0.19	-1.0
1,640,188	-		DZA65_RS07860	0.19	+1.0
1,640,387	-		DZA65_RS07860	0.51	-2.0
1,640,626	+		DZA65_RS07860	0.89	-1.3
1,640,626	+		DZA65_RS07860	0.89	-0.4
1,640,626	+		DZA65_RS07860	0.89	+1.2
1,640,627	-		DZA65_RS07860	0.89	-0.0
1,640,656	+				-2.2
1,640,693	-				+2.5
1,640,713	+				+0.3
1,640,713	+				-0.5
1,640,713	+				-0.5
1,640,739	+				-0.5
1,640,740	-				+1.3
1,640,740	-				-0.3
1,640,740	-				-2.5
1,640,740	-				-0.1
1,640,843	+				+0.3
1,640,844	-				-2.7
1,640,866	+				-0.7
1,640,867	-				-0.3
1,640,871	-				-0.7
1,640,991	+				-1.0
1,640,993	+				-0.1
1,641,009	-				-0.5
1,641,056	+				+1.0