Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07630

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Upstate
				remove
1,587,659	+			+1.4
1,587,659	+			-0.4
1,587,660	-			-2.7
1,587,660	-			-2.0
1,587,660	-			-0.2
1,587,671	+			+0.0
1,587,671	+			+1.0
1,587,671	+			+0.1
1,587,671	+			-0.7
1,587,684	+			-0.1
1,587,684	+			-0.3
1,587,822	+	DZA65_RS07620	0.62	-0.4
1,587,822	+	DZA65_RS07620	0.62	+0.9
1,587,822	+	DZA65_RS07620	0.62	-1.0
1,587,822	+	DZA65_RS07620	0.62	-0.7
1,587,823	-	DZA65_RS07620	0.62	+0.8
1,587,877	+	DZA65_RS07620	0.86	+0.9
1,587,877	+	DZA65_RS07620	0.86	-0.4
1,587,926	+			-2.5
1,588,149	+	DZA65_RS07625	0.32	-1.3
1,588,185	-	DZA65_RS07625	0.37	-1.9
1,588,212	+	DZA65_RS07625	0.41	-0.2
1,588,212	+	DZA65_RS07625	0.41	-0.0
1,588,212	+	DZA65_RS07625	0.41	-1.0
1,588,263	-	DZA65_RS07625	0.48	-1.9
1,588,268	+	DZA65_RS07625	0.49	+0.5
1,588,268	+	DZA65_RS07625	0.49	-1.3
1,588,269	-	DZA65_RS07625	0.49	+0.9
1,588,269	-	DZA65_RS07625	0.49	-2.0
1,588,269	-	DZA65_RS07625	0.49	-0.4
1,588,269	-	DZA65_RS07625	0.49	+1.5
1,588,269	-	DZA65_RS07625	0.49	-0.9
1,588,282	+	DZA65_RS07625	0.51	-1.5
1,588,289	+	DZA65_RS07625	0.52	-1.3
1,588,290	-	DZA65_RS07625	0.52	+0.3
1,588,291	+	DZA65_RS07625	0.52	-0.3
1,588,291	+	DZA65_RS07625	0.52	+0.6
1,588,292	-	DZA65_RS07625	0.52	+2.1
1,588,293	+	DZA65_RS07625	0.52	+1.0
1,588,293	+	DZA65_RS07625	0.52	-0.5
1,588,293	+	DZA65_RS07625	0.52	+1.3
1,588,294	-	DZA65_RS07625	0.52	+0.5
1,588,294	-	DZA65_RS07625	0.52	-0.4
1,588,316	-	DZA65_RS07625	0.56	+1.0
1,588,316	-	DZA65_RS07625	0.56	-0.4
1,588,355	+	DZA65_RS07625	0.61	-0.1
1,588,446	+	DZA65_RS07625	0.74	-0.7
1,588,446	+	DZA65_RS07625	0.74	-1.1
1,588,446	+	DZA65_RS07625	0.74	-1.2
1,588,457	+	DZA65_RS07625	0.75	+0.0
1,588,457	+	DZA65_RS07625	0.75	-1.0
1,588,458	-	DZA65_RS07625	0.75	+0.2
1,588,458	-	DZA65_RS07625	0.75	+0.4
1,588,458	-	DZA65_RS07625	0.75	-1.3
1,588,459	+	DZA65_RS07625	0.75	-1.3
1,588,460	-	DZA65_RS07625	0.76	+0.3
1,588,460	-	DZA65_RS07625	0.76	-0.5
1,588,460	-	DZA65_RS07625	0.76	+0.7
1,588,460	-	DZA65_RS07625	0.76	+0.2
1,588,460	-	DZA65_RS07625	0.76	+0.5
1,588,460	-	DZA65_RS07625	0.76	-0.8
1,588,478	+	DZA65_RS07625	0.78	+0.7
1,588,478	+	DZA65_RS07625	0.78	+1.0
1,588,478	+	DZA65_RS07625	0.78	-0.1
1,588,478	+	DZA65_RS07625	0.78	+0.5
1,588,478	+	DZA65_RS07625	0.78	-1.2
1,588,479	-	DZA65_RS07625	0.78	-0.5
1,588,479	-	DZA65_RS07625	0.78	-1.3
1,588,479	-	DZA65_RS07625	0.78	+0.3
1,588,479	-	DZA65_RS07625	0.78	-0.2
1,588,479	-	DZA65_RS07625	0.78	+0.6
1,588,479	-	DZA65_RS07625	0.78	+0.8
1,588,481	-	DZA65_RS07625	0.79	-0.3
1,588,481	-	DZA65_RS07625	0.79	+1.4
1,588,481	-	DZA65_RS07625	0.79	-0.3
1,588,578	+			+0.8
1,588,579	-			+0.1
1,588,579	-			+1.3
1,588,579	-			-1.0
1,588,599	+			-0.2
1,588,717	+			-0.4
1,588,718	-			-0.1
1,588,718	-			+0.9
1,588,718	-			+0.0
1,588,859	+	DZA65_RS07630	0.10	-2.3
1,588,859	+	DZA65_RS07630	0.10	+0.3
1,588,859	+	DZA65_RS07630	0.10	-1.2
1,588,859	+	DZA65_RS07630	0.10	-0.1
1,588,859	+	DZA65_RS07630	0.10	+1.1
1,588,859	+	DZA65_RS07630	0.10	-0.9
1,588,859	+	DZA65_RS07630	0.10	-0.7
1,588,859	+	DZA65_RS07630	0.10	-3.0
1,588,860	-	DZA65_RS07630	0.10	+0.7
1,588,860	-	DZA65_RS07630	0.10	+1.1
1,588,860	-	DZA65_RS07630	0.10	-0.3
1,588,860	-	DZA65_RS07630	0.10	-2.3
1,588,860	-	DZA65_RS07630	0.10	-1.7
1,588,860	-	DZA65_RS07630	0.10	-1.3
1,588,860	-	DZA65_RS07630	0.10	-0.4
1,588,860	-	DZA65_RS07630	0.10	-1.7
1,588,860	-	DZA65_RS07630	0.10	-0.2
1,588,860	-	DZA65_RS07630	0.10	-1.3
1,588,861	+	DZA65_RS07630	0.10	-2.9
1,588,861	+	DZA65_RS07630	0.10	+0.5
1,588,861	+	DZA65_RS07630	0.10	+0.4
1,588,861	+	DZA65_RS07630	0.10	-1.8
1,588,861	+	DZA65_RS07630	0.10	-0.1
1,588,861	+	DZA65_RS07630	0.10	+1.0
1,588,861	+	DZA65_RS07630	0.10	-0.9
1,588,861	+	DZA65_RS07630	0.10	-0.7
1,588,861	+	DZA65_RS07630	0.10	-1.1
1,588,861	+	DZA65_RS07630	0.10	+1.9
1,588,861	+	DZA65_RS07630	0.10	-1.1
1,588,861	+	DZA65_RS07630	0.10	-0.7
1,588,861	+	DZA65_RS07630	0.10	+0.7
1,588,861	+	DZA65_RS07630	0.10	+1.1
1,588,861	+	DZA65_RS07630	0.10	+0.8
1,588,861	+	DZA65_RS07630	0.10	-0.5
1,588,861	+	DZA65_RS07630	0.10	+0.0
1,588,861	+	DZA65_RS07630	0.10	+1.3
1,588,861	+	DZA65_RS07630	0.10	+0.4
1,588,861	+	DZA65_RS07630	0.10	+0.3
1,588,861	+	DZA65_RS07630	0.10	+1.1
1,588,862	-	DZA65_RS07630	0.10	-0.7
1,588,862	-	DZA65_RS07630	0.10	+0.9
1,588,862	-	DZA65_RS07630	0.10	+0.0
1,588,862	-	DZA65_RS07630	0.10	-0.0
1,588,862	-	DZA65_RS07630	0.10	+0.0
1,588,862	-	DZA65_RS07630	0.10	+0.0
1,588,862	-	DZA65_RS07630	0.10	-0.0
1,588,862	-	DZA65_RS07630	0.10	-2.0
1,588,862	-	DZA65_RS07630	0.10	-0.7
1,588,862	-	DZA65_RS07630	0.10	+1.6
1,588,862	-	DZA65_RS07630	0.10	-1.2
1,588,862	-	DZA65_RS07630	0.10	-0.6
1,588,862	-	DZA65_RS07630	0.10	-0.3
1,588,862	-	DZA65_RS07630	0.10	+1.0
1,588,862	-			+0.3
1,588,862	-	DZA65_RS07630	0.10	-0.1
1,588,862	-	DZA65_RS07630	0.10	+0.1
1,588,862	-	DZA65_RS07630	0.10	-0.4
1,588,862	-	DZA65_RS07630	0.10	+0.2
1,588,862	-	DZA65_RS07630	0.10	-0.4
1,588,897	+	DZA65_RS07630	0.12	+0.3
1,588,897	+	DZA65_RS07630	0.12	+0.3
1,588,897	+	DZA65_RS07630	0.12	+0.6
1,588,897	+			+0.3
1,588,898	-	DZA65_RS07630	0.12	-1.3
1,588,898	-	DZA65_RS07630	0.12	-0.2
1,588,898	-	DZA65_RS07630	0.12	-0.5
1,588,898	-	DZA65_RS07630	0.12	-1.5
1,588,898	-	DZA65_RS07630	0.12	+1.7
1,588,927	-	DZA65_RS07630	0.14	-0.2
1,588,930	+	DZA65_RS07630	0.14	+1.8
1,588,930	+	DZA65_RS07630	0.14	-0.3
1,588,930	+	DZA65_RS07630	0.14	-0.2
1,588,988	+	DZA65_RS07630	0.17	-1.0
1,589,082	-	DZA65_RS07630	0.22	+1.9
1,589,191	+	DZA65_RS07630	0.27	-0.0
1,589,191	+	DZA65_RS07630	0.27	-2.3
1,589,192	-	DZA65_RS07630	0.27	-1.3
1,589,405	+			-1.3
1,589,541	+	DZA65_RS07630	0.45	-0.4
1,589,541	+	DZA65_RS07630	0.45	-1.3
1,589,541	+	DZA65_RS07630	0.45	-0.5
1,589,541	+	DZA65_RS07630	0.45	+1.5
1,589,541	+	DZA65_RS07630	0.45	-1.7
1,589,541	+	DZA65_RS07630	0.45	-0.3
1,589,541	+	DZA65_RS07630	0.45	-0.5
1,589,542	-	DZA65_RS07630	0.45	-0.4
1,589,542	-	DZA65_RS07630	0.45	-0.9
1,589,545	+	DZA65_RS07630	0.45	+0.2
1,589,545	+	DZA65_RS07630	0.45	+1.6
1,589,545	+	DZA65_RS07630	0.45	+1.9
1,589,545	+	DZA65_RS07630	0.45	-1.0
1,589,545	+	DZA65_RS07630	0.45	-2.0
1,589,545	+	DZA65_RS07630	0.45	+0.7
1,589,545	+	DZA65_RS07630	0.45	-2.0
1,589,545	+	DZA65_RS07630	0.45	+1.0
1,589,546	-	DZA65_RS07630	0.45	-1.2
1,589,546	-	DZA65_RS07630	0.45	+0.8
1,589,546	-	DZA65_RS07630	0.45	-0.4
1,589,560	+	DZA65_RS07630	0.46	-0.3
1,589,560	+	DZA65_RS07630	0.46	-0.8
1,589,561	-	DZA65_RS07630	0.46	+0.0
1,589,561	-	DZA65_RS07630	0.46	-0.5
1,589,561	-	DZA65_RS07630	0.46	+0.8
1,589,562	+	DZA65_RS07630	0.46	+1.5
1,589,562	+	DZA65_RS07630	0.46	-0.4
1,589,562	+	DZA65_RS07630	0.46	-0.5
1,589,562	+	DZA65_RS07630	0.46	-2.3
1,589,563	-	DZA65_RS07630	0.46	-1.0
1,589,563	-	DZA65_RS07630	0.46	+0.0
1,589,563	-	DZA65_RS07630	0.46	-1.0
1,589,602	+	DZA65_RS07630	0.48	+0.0
1,589,609	+	DZA65_RS07630	0.48	-1.3
1,589,610	-	DZA65_RS07630	0.48	+2.5
1,589,691	-	DZA65_RS07630	0.53	+0.3
1,589,705	-	DZA65_RS07630	0.53	-1.2
1,589,761	+	DZA65_RS07630	0.56	-0.2
1,589,761	+	DZA65_RS07630	0.56	-0.2
1,589,761	+	DZA65_RS07630	0.56	+0.3
1,589,762	-	DZA65_RS07630	0.56	-0.1
1,589,762	-	DZA65_RS07630	0.56	+1.0
1,589,762	-	DZA65_RS07630	0.56	+0.3
1,589,782	+	DZA65_RS07630	0.57	-0.8
1,589,782	+	DZA65_RS07630	0.57	-0.2
1,589,782	+	DZA65_RS07630	0.57	-1.3
1,589,782	+	DZA65_RS07630	0.57	-1.3
1,589,782	+	DZA65_RS07630	0.57	-0.4
1,589,803	+	DZA65_RS07630	0.58	-1.7
1,589,803	+	DZA65_RS07630	0.58	+0.1
1,589,803	+	DZA65_RS07630	0.58	-1.4
1,589,804	-	DZA65_RS07630	0.58	+0.7
1,589,804	-	DZA65_RS07630	0.58	+0.1
1,589,804	-	DZA65_RS07630	0.58	+0.8
1,589,804	-	DZA65_RS07630	0.58	-0.2
1,589,825	+	DZA65_RS07630	0.59	-0.5
1,589,826	-	DZA65_RS07630	0.59	-1.9
1,589,826	-	DZA65_RS07630	0.59	-0.5
1,589,827	+	DZA65_RS07630	0.59	+0.2
1,589,827	+	DZA65_RS07630	0.59	+0.1
1,589,827	+	DZA65_RS07630	0.59	+0.9
1,589,827	+	DZA65_RS07630	0.59	-0.8
1,589,827	+	DZA65_RS07630	0.59	+0.3
1,589,827	+	DZA65_RS07630	0.59	+0.3
1,589,827	+	DZA65_RS07630	0.59	-0.0
1,589,827	+	DZA65_RS07630	0.59	+0.3
1,589,827	+	DZA65_RS07630	0.59	+0.1
1,589,828	-	DZA65_RS07630	0.59	+1.0
1,589,828	-	DZA65_RS07630	0.59	+0.8
1,589,828	-	DZA65_RS07630	0.59	-0.5
1,589,828	-	DZA65_RS07630	0.59	+1.3
1,589,828	-	DZA65_RS07630	0.59	-1.7
1,589,960	-	DZA65_RS07630	0.66	-0.7
1,590,019	+	DZA65_RS07630	0.69	+1.7
1,590,020	-	DZA65_RS07630	0.69	+1.2
1,590,050	+	DZA65_RS07630	0.71	-0.7
1,590,079	+	DZA65_RS07630	0.72	+1.7
1,590,079	+	DZA65_RS07630	0.72	-2.0
1,590,079	+	DZA65_RS07630	0.72	-0.6
1,590,080	-	DZA65_RS07630	0.72	+0.5
1,590,102	-	DZA65_RS07630	0.73	-0.4
1,590,102	-	DZA65_RS07630	0.73	+0.3
1,590,103	+	DZA65_RS07630	0.73	+0.5
1,590,103	+	DZA65_RS07630	0.73	-0.3
1,590,103	+	DZA65_RS07630	0.73	-0.6
1,590,103	+	DZA65_RS07630	0.73	-2.5
1,590,103	+	DZA65_RS07630	0.73	+0.1
1,590,103	+	DZA65_RS07630	0.73	-0.3
1,590,103	+	DZA65_RS07630	0.73	+0.9
1,590,103	+	DZA65_RS07630	0.73	-0.4
1,590,103	+	DZA65_RS07630	0.73	+0.7
1,590,103	+	DZA65_RS07630	0.73	-0.5
1,590,103	+	DZA65_RS07630	0.73	+0.3
1,590,103	+	DZA65_RS07630	0.73	+1.4
1,590,103	+	DZA65_RS07630	0.73	+1.0
1,590,104	-	DZA65_RS07630	0.74	-1.7
1,590,104	-	DZA65_RS07630	0.74	-1.2
1,590,104	-	DZA65_RS07630	0.74	-0.7
1,590,104	-	DZA65_RS07630	0.74	+0.3
1,590,104	-	DZA65_RS07630	0.74	-1.0
1,590,104	-	DZA65_RS07630	0.74	-0.3
1,590,104	-	DZA65_RS07630	0.74	-1.0
1,590,104	-	DZA65_RS07630	0.74	-1.4
1,590,104	-	DZA65_RS07630	0.74	+0.5
1,590,104	-	DZA65_RS07630	0.74	+0.1
1,590,104	-	DZA65_RS07630	0.74	+2.3
1,590,104	-	DZA65_RS07630	0.74	-1.4
1,590,104	-	DZA65_RS07630	0.74	-1.0
1,590,104	-	DZA65_RS07630	0.74	-0.2
1,590,104	-	DZA65_RS07630	0.74	-0.6
1,590,128	-	DZA65_RS07630	0.75	-0.4
1,590,283	+	DZA65_RS07630	0.83	-2.2
1,590,283	+	DZA65_RS07630	0.83	-0.3
1,590,283	+	DZA65_RS07630	0.83	-2.9
1,590,283	+	DZA65_RS07630	0.83	-0.3
1,590,283	+	DZA65_RS07630	0.83	-0.9
1,590,283	+	DZA65_RS07630	0.83	-0.7
1,590,283	+	DZA65_RS07630	0.83	-1.7
1,590,283	+	DZA65_RS07630	0.83	-0.7
1,590,283	+	DZA65_RS07630	0.83	-0.1
1,590,283	+	DZA65_RS07630	0.83	-0.0
1,590,283	+	DZA65_RS07630	0.83	+0.3
1,590,283	+	DZA65_RS07630	0.83	+1.1
1,590,283	+	DZA65_RS07630	0.83	-0.8
1,590,283	+	DZA65_RS07630	0.83	-1.3
1,590,283	+	DZA65_RS07630	0.83	-2.5
1,590,283	+	DZA65_RS07630	0.83	-0.7
1,590,283	+	DZA65_RS07630	0.83	-0.0
1,590,284	-	DZA65_RS07630	0.83	+1.6
1,590,284	-	DZA65_RS07630	0.83	+0.3
1,590,284	-	DZA65_RS07630	0.83	-0.7
1,590,284	-	DZA65_RS07630	0.83	-0.3
1,590,284	-	DZA65_RS07630	0.83	+0.6
1,590,284	-	DZA65_RS07630	0.83	-1.3
1,590,284	-	DZA65_RS07630	0.83	-0.7
1,590,284	-	DZA65_RS07630	0.83	+1.0
1,590,284	-	DZA65_RS07630	0.83	+0.3
1,590,284	-	DZA65_RS07630	0.83	-0.7
1,590,284	-	DZA65_RS07630	0.83	+0.4
1,590,284	-	DZA65_RS07630	0.83	+0.3
1,590,284	-	DZA65_RS07630	0.83	-0.7
1,590,309	+	DZA65_RS07630	0.84	-0.7
1,590,309	+	DZA65_RS07630	0.84	-0.6
1,590,339	-			+0.3
1,590,352	+	DZA65_RS07630	0.86	-0.1
1,590,352	+	DZA65_RS07630	0.86	+0.3
1,590,353	-	DZA65_RS07630	0.86	-0.5
1,590,385	+	DZA65_RS07630	0.88	-0.6
1,590,385	+	DZA65_RS07630	0.88	+0.3
1,590,416	+	DZA65_RS07630	0.89	+0.2
1,590,416	+	DZA65_RS07630	0.89	-0.9
1,590,508	+			-0.6
1,590,508	+			+1.3
1,590,508	+			+0.3
1,590,508	+			-0.1
1,590,520	+			-0.9
1,590,582	-			+0.9
1,590,608	+			+0.5
1,590,608	+			+0.7
1,590,609	-			-1.2
1,590,609	-			-0.1
1,590,691	-	DZA65_RS07635	0.21	-0.0
1,590,741	-	DZA65_RS07635	0.39	-1.3
1,590,741	-	DZA65_RS07635	0.39	-0.6
1,590,832	-	DZA65_RS07635	0.72	+0.4
1,590,890	-			-0.5
1,590,897	+			+0.2
1,590,898	-			+0.6
1,590,941	+			-1.5
1,590,941	+			-2.4
1,590,941	+			+0.8
1,590,942	-			-0.5
1,590,942	-			-1.1
1,590,942	-			-0.5
1,590,942	-			-1.9
1,591,066	+	DZA65_RS07640	0.21	-1.0
1,591,067	-	DZA65_RS07640	0.21	+0.6
1,591,067	-	DZA65_RS07640	0.21	+0.2
1,591,069	+	DZA65_RS07640	0.22	-0.6
1,591,069	+			-0.3
1,591,069	+	DZA65_RS07640	0.22	-1.9
1,591,070	-	DZA65_RS07640	0.22	+0.8
1,591,070	-			-1.0
1,591,104	+	DZA65_RS07640	0.27	+0.0
1,591,105	-	DZA65_RS07640	0.27	+0.8
1,591,112	-	DZA65_RS07640	0.28	-0.2
1,591,122	+	DZA65_RS07640	0.30	-0.7
1,591,123	-	DZA65_RS07640	0.30	-0.8
1,591,123	-	DZA65_RS07640	0.30	-1.3
1,591,123	-	DZA65_RS07640	0.30	-0.0
1,591,123	-	DZA65_RS07640	0.30	-1.0
1,591,171	+	DZA65_RS07640	0.37	-0.1
1,591,171	+	DZA65_RS07640	0.37	+1.3
1,591,179	+	DZA65_RS07640	0.39	+0.6
1,591,180	-	DZA65_RS07640	0.39	+2.6
1,591,182	+	DZA65_RS07640	0.39	+0.5
1,591,182	+	DZA65_RS07640	0.39	-2.3
1,591,183	-	DZA65_RS07640	0.39	-0.1
1,591,271	+	DZA65_RS07640	0.53	+0.5
1,591,272	-	DZA65_RS07640	0.53	+0.9
1,591,272	-	DZA65_RS07640	0.53	-0.4
1,591,297	-	DZA65_RS07640	0.57	+1.9
1,591,375	+	DZA65_RS07640	0.69	+0.6
1,591,376	-	DZA65_RS07640	0.69	+0.5
1,591,414	+	DZA65_RS07640	0.75	-1.4
1,591,470	+	DZA65_RS07640	0.83	+0.5
1,591,471	-	DZA65_RS07640	0.84	-1.3
1,591,478	-	DZA65_RS07640	0.85	+0.5
1,591,604	-			-1.3

Or see this region's nucleotide sequence