Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07300

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,517,832	-		DZA65_RS07295	0.21	+1.0
1,517,858	+		DZA65_RS07295	0.24	-0.5
1,517,859	-		DZA65_RS07295	0.24	-0.4
1,517,859	-		DZA65_RS07295	0.24	+0.5
1,517,859	-		DZA65_RS07295	0.24	-1.0
1,517,860	+		DZA65_RS07295	0.24	-0.3
1,517,861	-		DZA65_RS07295	0.24	-0.7
1,517,932	+		DZA65_RS07295	0.32	+0.2
1,517,932	+		DZA65_RS07295	0.32	-1.5
1,517,932	+		DZA65_RS07295	0.32	-1.5
1,517,932	+		DZA65_RS07295	0.32	-0.6
1,517,932	+		DZA65_RS07295	0.32	+1.5
1,517,932	+		DZA65_RS07295	0.32	+0.5
1,517,932	+		DZA65_RS07295	0.32	-0.7
1,517,932	+		DZA65_RS07295	0.32	+0.3
1,517,932	+		DZA65_RS07295	0.32	-2.1
1,517,932	+		DZA65_RS07295	0.32	-0.3
1,517,932	+		DZA65_RS07295	0.32	-0.2
1,517,933	-		DZA65_RS07295	0.32	-0.8
1,517,933	-		DZA65_RS07295	0.32	+1.9
1,517,933	-		DZA65_RS07295	0.32	-1.3
1,517,933	-		DZA65_RS07295	0.32	-0.9
1,517,933	-		DZA65_RS07295	0.32	-0.3
1,517,938	+		DZA65_RS07295	0.33	-1.1
1,517,938	+		DZA65_RS07295	0.33	-0.3
1,517,938	+		DZA65_RS07295	0.33	+0.0
1,517,938	+		DZA65_RS07295	0.33	+0.3
1,517,938	+		DZA65_RS07295	0.33	+0.0
1,517,939	-		DZA65_RS07295	0.33	-0.5
1,517,939	-		DZA65_RS07295	0.33	+0.8
1,517,939	-		DZA65_RS07295	0.33	+1.6
1,517,939	-		DZA65_RS07295	0.33	+0.3
1,518,106	+		DZA65_RS07295	0.52	+0.2
1,518,106	+		DZA65_RS07295	0.52	+0.5
1,518,120	-		DZA65_RS07295	0.53	+0.1
1,518,158	+		DZA65_RS07295	0.57	+0.2
1,518,251	+		DZA65_RS07295	0.68	-0.9
1,518,251	+		DZA65_RS07295	0.68	-1.0
1,518,251	+		DZA65_RS07295	0.68	+1.0
1,518,252	-		DZA65_RS07295	0.68	-0.0
1,518,252	-		DZA65_RS07295	0.68	-0.3
1,518,252	-		DZA65_RS07295	0.68	+0.1
1,518,253	+		DZA65_RS07295	0.68	+0.1
1,518,253	+		DZA65_RS07295	0.68	+0.3
1,518,253	+		DZA65_RS07295	0.68	-0.3
1,518,253	+		DZA65_RS07295	0.68	+0.5
1,518,253	+		DZA65_RS07295	0.68	+0.5
1,518,253	+		DZA65_RS07295	0.68	-1.5
1,518,254	-		DZA65_RS07295	0.68	-0.6
1,518,254	-		DZA65_RS07295	0.68	-0.2
1,518,254	-		DZA65_RS07295	0.68	-1.1
1,518,254	-		DZA65_RS07295	0.68	+0.6
1,518,254	-				+0.3
1,518,254	-		DZA65_RS07295	0.68	-0.8
1,518,274	-		DZA65_RS07295	0.70	+0.2
1,518,274	-		DZA65_RS07295	0.70	+0.9
1,518,376	+		DZA65_RS07295	0.82	+0.5
1,518,376	+		DZA65_RS07295	0.82	-0.4
1,518,376	+		DZA65_RS07295	0.82	+1.3
1,518,376	+		DZA65_RS07295	0.82	-0.1
1,518,377	-		DZA65_RS07295	0.82	-0.9
1,518,445	+		DZA65_RS07295	0.90	-1.8
1,518,453	+				-0.4
1,518,454	-				-1.7
1,518,470	+				-0.9
1,518,470	+				-1.3
1,518,470	+				+0.6
1,518,470	+				-0.1
1,518,476	+				-0.5
1,518,546	+				-0.1
1,518,547	-				-0.1
1,518,554	+				+0.3
1,518,554	+				-0.9
1,518,554	+				-2.0
1,518,555	-				+1.7
1,518,555	-				-2.0
1,518,555	-				+0.3
1,518,555	-				-0.5
1,518,555	-				+0.1
1,518,555	-				-0.3
1,518,555	-				-1.3
1,518,555	-				-1.2
1,518,555	-				-0.5
1,518,555	-				+0.5
1,518,555	-				+1.3
1,518,557	+				-1.3
1,518,557	+				+0.3
1,518,557	+				+1.0
1,518,582	+				+0.3
1,518,583	-				+0.1
1,518,640	+				-1.9
1,518,640	+				-0.7
1,518,641	-				-1.4
1,518,641	-				+1.1
1,518,661	+				-1.3
1,518,709	+				-0.3
1,518,709	+				-0.4
1,518,712	+				+0.3
1,518,712	+				+1.2
1,518,712	+				-0.4
1,518,712	+				+1.2
1,518,713	-				-1.7
1,518,788	+				+0.3
1,518,817	+				+1.2
1,518,817	+				+1.3
1,518,817	+				+0.1
1,518,818	-				-3.1
1,518,818	-				-0.7
1,518,893	-				-2.5
1,518,895	+				-0.3
1,518,895	+				-1.5
1,518,895	+				+0.6
1,518,895	+				+0.3
1,518,905	-				+0.7
1,518,923	+		DZA65_RS07300	0.11	-0.6
1,518,923	+		DZA65_RS07300	0.11	+0.7
1,518,923	+		DZA65_RS07300	0.11	+0.8
1,518,923	+		DZA65_RS07300	0.11	-0.3
1,518,924	-		DZA65_RS07300	0.11	-0.7
1,518,924	-		DZA65_RS07300	0.11	+0.5
1,518,924	-		DZA65_RS07300	0.11	+0.1
1,518,924	-		DZA65_RS07300	0.11	+0.7
1,518,932	+		DZA65_RS07300	0.12	-0.5
1,518,945	-		DZA65_RS07300	0.13	-0.1
1,518,962	+		DZA65_RS07300	0.15	-0.1
1,518,989	+		DZA65_RS07300	0.18	-0.1
1,518,989	+		DZA65_RS07300	0.18	+0.3
1,518,989	+		DZA65_RS07300	0.18	+1.5
1,519,015	-		DZA65_RS07300	0.21	-0.8
1,519,040	+		DZA65_RS07300	0.24	+0.2
1,519,044	+		DZA65_RS07300	0.24	+0.2
1,519,044	+		DZA65_RS07300	0.24	+0.3
1,519,045	-		DZA65_RS07300	0.25	+1.2
1,519,045	-		DZA65_RS07300	0.25	-0.2
1,519,074	+		DZA65_RS07300	0.28	-0.5
1,519,074	+		DZA65_RS07300	0.28	-0.5
1,519,074	+		DZA65_RS07300	0.28	+2.1
1,519,075	-		DZA65_RS07300	0.28	-2.3
1,519,096	-		DZA65_RS07300	0.30	-0.5
1,519,110	+		DZA65_RS07300	0.32	+1.0
1,519,149	-		DZA65_RS07300	0.36	+2.4
1,519,198	+		DZA65_RS07300	0.42	+1.0
1,519,199	-		DZA65_RS07300	0.42	-0.1
1,519,318	-		DZA65_RS07300	0.55	-0.7
1,519,346	+		DZA65_RS07300	0.58	-0.7
1,519,346	+		DZA65_RS07300	0.58	-2.0
1,519,347	-		DZA65_RS07300	0.58	+0.7
1,519,396	-		DZA65_RS07300	0.64	-0.9
1,519,396	-		DZA65_RS07300	0.64	+0.5
1,519,396	-		DZA65_RS07300	0.64	+0.0
1,519,396	-		DZA65_RS07300	0.64	-2.1
1,519,432	-		DZA65_RS07300	0.68	+0.2
1,519,605	+		DZA65_RS07300	0.87	-0.7
1,519,606	-		DZA65_RS07300	0.87	-1.1
1,519,677	+				+0.3
1,519,677	+				-0.3
1,519,678	-				-0.0
1,519,738	+				+0.3
1,519,759	+				+0.2
1,519,760	-				+0.3
1,519,783	-				-0.2
1,519,800	+				+0.1
1,519,801	-				+1.1
1,519,855	+				+0.1
1,519,856	-				-0.3
1,519,856	-				+0.5
1,519,856	-				-0.3
1,519,856	-				-0.7
1,519,912	-				+1.3
1,519,921	-				+0.7
1,520,008	+		DZA65_RS07305	0.12	-1.1
1,520,008	+		DZA65_RS07305	0.12	-0.3
1,520,009	-		DZA65_RS07305	0.12	-1.7
1,520,009	-		DZA65_RS07305	0.12	+0.3
1,520,009	-		DZA65_RS07305	0.12	-1.3
1,520,009	-		DZA65_RS07305	0.12	+1.3
1,520,009	-		DZA65_RS07305	0.12	+0.6
1,520,009	-		DZA65_RS07305	0.12	+1.0
1,520,055	+		DZA65_RS07305	0.16	-0.2
1,520,055	+		DZA65_RS07305	0.16	-2.5
1,520,055	+		DZA65_RS07305	0.16	+0.7
1,520,055	+		DZA65_RS07305	0.16	-1.4
1,520,055	+		DZA65_RS07305	0.16	+0.9
1,520,055	+		DZA65_RS07305	0.16	-0.1
1,520,055	+		DZA65_RS07305	0.16	+1.9
1,520,055	+		DZA65_RS07305	0.16	+0.2
1,520,055	+		DZA65_RS07305	0.16	+0.7
1,520,055	+		DZA65_RS07305	0.16	-1.5
1,520,055	+		DZA65_RS07305	0.16	-0.2
1,520,055	+		DZA65_RS07305	0.16	-1.5
1,520,056	-		DZA65_RS07305	0.16	-0.7
1,520,056	-		DZA65_RS07305	0.16	-0.7
1,520,056	-				-1.3
1,520,056	-		DZA65_RS07305	0.16	-0.0
1,520,056	-		DZA65_RS07305	0.16	-0.0
1,520,056	-		DZA65_RS07305	0.16	-0.4
1,520,056	-		DZA65_RS07305	0.16	+0.0
1,520,056	-		DZA65_RS07305	0.16	-1.5
1,520,056	-		DZA65_RS07305	0.16	+0.6
1,520,056	-		DZA65_RS07305	0.16	+1.1
1,520,056	-		DZA65_RS07305	0.16	+0.5
1,520,056	-		DZA65_RS07305	0.16	+0.5
1,520,104	+		DZA65_RS07305	0.20	-0.3
1,520,105	-		DZA65_RS07305	0.20	-0.9
1,520,105	-		DZA65_RS07305	0.20	-0.3
1,520,327	+		DZA65_RS07305	0.39	-0.3
1,520,327	+		DZA65_RS07305	0.39	+0.0
1,520,328	-		DZA65_RS07305	0.39	+0.3
1,520,328	-		DZA65_RS07305	0.39	+0.4
1,520,328	-		DZA65_RS07305	0.39	+0.8
1,520,328	-		DZA65_RS07305	0.39	-2.0
1,520,561	-		DZA65_RS07305	0.60	+0.0
1,520,565	+		DZA65_RS07305	0.60	-0.7
1,520,565	+		DZA65_RS07305	0.60	-0.3
1,520,565	+		DZA65_RS07305	0.60	-0.9
1,520,566	-		DZA65_RS07305	0.60	-0.5
1,520,653	+		DZA65_RS07305	0.68	-0.1
1,520,653	+		DZA65_RS07305	0.68	-1.3
1,520,653	+		DZA65_RS07305	0.68	+0.3
1,520,653	+		DZA65_RS07305	0.68	-0.2
1,520,653	+		DZA65_RS07305	0.68	-1.0
1,520,653	+		DZA65_RS07305	0.68	+0.3
1,520,653	+		DZA65_RS07305	0.68	+0.4
1,520,654	-		DZA65_RS07305	0.68	+0.6
1,520,654	-		DZA65_RS07305	0.68	+0.3
1,520,654	-		DZA65_RS07305	0.68	-0.5
1,520,654	-		DZA65_RS07305	0.68	+0.6
1,520,655	+		DZA65_RS07305	0.68	-1.1
1,520,655	+		DZA65_RS07305	0.68	-0.5
1,520,655	+		DZA65_RS07305	0.68	-0.2
1,520,655	+		DZA65_RS07305	0.68	+1.8
1,520,655	+		DZA65_RS07305	0.68	-2.0
1,520,655	+		DZA65_RS07305	0.68	+0.7
1,520,655	+		DZA65_RS07305	0.68	-0.3
1,520,655	+		DZA65_RS07305	0.68	+0.4
1,520,655	+		DZA65_RS07305	0.68	+0.8
1,520,656	-		DZA65_RS07305	0.68	+0.1
1,520,656	-		DZA65_RS07305	0.68	+2.0
1,520,656	-		DZA65_RS07305	0.68	+0.0
1,520,656	-		DZA65_RS07305	0.68	-3.5
1,520,656	-		DZA65_RS07305	0.68	-1.7
1,520,656	-		DZA65_RS07305	0.68	-2.0
1,520,672	-		DZA65_RS07305	0.69	-0.9