Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,388,876	+		DZA65_RS06700	0.28	-0.2
1,388,877	-		DZA65_RS06700	0.28	+0.8
1,388,899	+		DZA65_RS06700	0.31	+2.0
1,388,899	+		DZA65_RS06700	0.31	+0.2
1,388,899	+		DZA65_RS06700	0.31	-0.8
1,388,900	-		DZA65_RS06700	0.31	-0.2
1,388,900	-		DZA65_RS06700	0.31	-1.0
1,388,900	-		DZA65_RS06700	0.31	-0.4
1,388,900	-		DZA65_RS06700	0.31	-0.9
1,388,903	+		DZA65_RS06700	0.32	+0.1
1,388,903	+		DZA65_RS06700	0.32	+0.2
1,388,903	+		DZA65_RS06700	0.32	-0.2
1,388,904	-		DZA65_RS06700	0.32	-1.8
1,388,904	-		DZA65_RS06700	0.32	-0.8
1,388,904	-		DZA65_RS06700	0.32	+0.7
1,388,975	+		DZA65_RS06700	0.41	-0.2
1,388,975	+		DZA65_RS06700	0.41	+1.1
1,388,975	+		DZA65_RS06700	0.41	+1.1
1,388,975	+		DZA65_RS06700	0.41	-1.8
1,388,975	+		DZA65_RS06700	0.41	-0.2
1,388,976	-		DZA65_RS06700	0.41	-1.2
1,388,976	-		DZA65_RS06700	0.41	-0.2
1,388,976	-		DZA65_RS06700	0.41	+1.1
1,389,011	+		DZA65_RS06700	0.45	+0.4
1,389,089	-		DZA65_RS06700	0.55	+0.5
1,389,110	+		DZA65_RS06700	0.58	+2.0
1,389,111	-		DZA65_RS06700	0.58	+0.8
1,389,137	+		DZA65_RS06700	0.61	+0.6
1,389,138	-		DZA65_RS06700	0.61	+3.2
1,389,155	+		DZA65_RS06700	0.63	+0.0
1,389,182	-		DZA65_RS06700	0.67	-1.4
1,389,197	-		DZA65_RS06700	0.68	-0.5
1,389,229	+		DZA65_RS06700	0.72	+0.6
1,389,229	+		DZA65_RS06700	0.72	-1.0
1,389,229	+		DZA65_RS06700	0.72	-0.3
1,389,229	+		DZA65_RS06700	0.72	-1.4
1,389,230	-		DZA65_RS06700	0.73	-0.9
1,389,230	-		DZA65_RS06700	0.73	+1.1
1,389,230	-		DZA65_RS06700	0.73	-1.4
1,389,230	-		DZA65_RS06700	0.73	+0.1
1,389,230	-		DZA65_RS06700	0.73	+1.9
1,389,239	+		DZA65_RS06700	0.74	-2.2
1,389,239	+		DZA65_RS06700	0.74	-0.4
1,389,239	+		DZA65_RS06700	0.74	-0.6
1,389,239	+		DZA65_RS06700	0.74	-0.8
1,389,239	+		DZA65_RS06700	0.74	+0.1
1,389,240	-		DZA65_RS06700	0.74	-0.6
1,389,242	+		DZA65_RS06700	0.74	-1.6
1,389,242	+		DZA65_RS06700	0.74	+0.4
1,389,242	+		DZA65_RS06700	0.74	-0.3
1,389,242	+		DZA65_RS06700	0.74	-2.4
1,389,243	-		DZA65_RS06700	0.74	-0.2
1,389,283	+		DZA65_RS06700	0.79	-2.2
1,389,283	+		DZA65_RS06700	0.79	-0.6
1,389,283	+		DZA65_RS06700	0.79	-2.4
1,389,284	-		DZA65_RS06700	0.79	+0.1
1,389,304	+		DZA65_RS06700	0.82	+1.8
1,389,304	+		DZA65_RS06700	0.82	-1.4
1,389,304	+		DZA65_RS06700	0.82	-1.9
1,389,305	-		DZA65_RS06700	0.82	+0.5
1,389,377	+				-0.8
1,389,378	-				-0.6
1,389,378	-				+0.4
1,389,392	+				-1.1
1,389,395	-				-0.1
1,389,486	+				-0.5
1,389,486	+				+1.4
1,389,486	+				+0.6
1,389,486	+				-0.5
1,389,487	-				-1.9
1,389,487	-				-1.2
1,389,508	+				+0.5
1,389,508	+				+0.2
1,389,508	+				-1.8
1,389,508	+				+0.0
1,389,509	-				-0.9
1,389,509	-				+0.7
1,389,509	-				+0.2
1,389,510	+				-0.4
1,389,510	+				+1.6
1,389,510	+				-0.6
1,389,510	+				+1.2
1,389,510	+				-0.1
1,389,510	+				+1.2
1,389,510	+				-1.4
1,389,510	+				+0.4
1,389,510	+				+0.3
1,389,510	+				-1.2
1,389,511	-				-1.4
1,389,511	-				-1.6
1,389,511	-				+0.4
1,389,511	-				+1.3
1,389,511	-				+0.9
1,389,511	-				-0.4
1,389,511	-				-0.2
1,389,511	-				-0.3
1,389,511	-				+0.8
1,389,511	-				-3.1
1,389,511	-				-0.9
1,389,526	+				-0.9
1,389,526	+				+1.4
1,389,526	+				+1.6
1,389,526	+				+0.3
1,389,526	+				+0.5
1,389,526	+				-1.9
1,389,527	-				+0.2
1,389,527	-				+0.4
1,389,527	-				+0.2
1,389,527	-				+0.0
1,389,527	-				-0.7
1,389,527	-				+0.3
1,389,529	+				+0.9
1,389,529	+				-0.2
1,389,529	+				+1.8
1,389,529	+				+1.5
1,389,529	+				-0.7
1,389,554	+				-0.5
1,389,569	+				-1.9
1,389,570	-				-0.2
1,389,602	-				-3.1
1,389,604	+				-0.2
1,389,617	+				-0.2
1,389,618	-				+0.2
1,389,654	-				-0.5
1,389,657	+				-0.0
1,389,735	+				-0.1
1,389,735	+				-0.2
1,389,735	+				+0.3
1,389,736	-				+0.6
1,389,736	-				+1.9
1,389,736	-				+0.8
1,389,736	-				-0.9
1,389,737	+				-0.3
1,389,737	+				+0.2
1,389,737	+				-1.1
1,389,738	-				-0.3
1,389,740	+				-0.2
1,389,741	-				+1.9
1,389,741	-				+0.5
1,389,792	+				+1.3
1,389,792	+				+0.3
1,389,792	+				-0.0
1,389,793	-				+1.1
1,389,793	-				-0.9
1,389,793	-				-0.9
1,389,803	-				+0.4
1,389,806	+				+1.7
1,389,807	-				+1.0
1,389,807	-				-0.8
1,389,881	-				-0.6
1,389,963	+		DZA65_RS06705	0.12	+0.4
1,389,963	+		DZA65_RS06705	0.12	+0.6
1,389,964	-		DZA65_RS06705	0.12	+1.1
1,389,964	-		DZA65_RS06705	0.12	+0.1
1,389,964	-		DZA65_RS06705	0.12	-0.6
1,389,964	-		DZA65_RS06705	0.12	-0.6
1,389,964	-		DZA65_RS06705	0.12	+0.4
1,389,999	+		DZA65_RS06705	0.14	-1.9
1,389,999	+		DZA65_RS06705	0.14	-1.9
1,389,999	+		DZA65_RS06705	0.14	-0.3
1,389,999	+		DZA65_RS06705	0.14	+0.6
1,389,999	+		DZA65_RS06705	0.14	-0.2
1,389,999	+		DZA65_RS06705	0.14	-0.0
1,389,999	+		DZA65_RS06705	0.14	-0.1
1,389,999	+		DZA65_RS06705	0.14	-1.4
1,389,999	+		DZA65_RS06705	0.14	+0.4
1,390,000	-		DZA65_RS06705	0.14	-0.0
1,390,000	-		DZA65_RS06705	0.14	-0.1
1,390,000	-		DZA65_RS06705	0.14	+0.1
1,390,000	-		DZA65_RS06705	0.14	-1.0
1,390,011	+		DZA65_RS06705	0.15	-1.2
1,390,011	+		DZA65_RS06705	0.15	-3.1
1,390,011	+		DZA65_RS06705	0.15	-0.6
1,390,101	+		DZA65_RS06705	0.21	+0.4
1,390,101	+		DZA65_RS06705	0.21	+0.4
1,390,101	+		DZA65_RS06705	0.21	-0.6
1,390,102	-		DZA65_RS06705	0.21	-0.3
1,390,102	-		DZA65_RS06705	0.21	-0.1
1,390,132	-		DZA65_RS06705	0.23	-0.9
1,390,189	+		DZA65_RS06705	0.27	-0.9
1,390,189	+		DZA65_RS06705	0.27	-1.8
1,390,189	+		DZA65_RS06705	0.27	+1.1
1,390,189	+		DZA65_RS06705	0.27	+0.1
1,390,190	-		DZA65_RS06705	0.27	-0.5
1,390,303	+		DZA65_RS06705	0.35	-2.5
1,390,303	+		DZA65_RS06705	0.35	-0.9
1,390,303	+		DZA65_RS06705	0.35	+0.1
1,390,303	+		DZA65_RS06705	0.35	+2.5
1,390,303	+		DZA65_RS06705	0.35	+2.0
1,390,303	+		DZA65_RS06705	0.35	-0.7
1,390,303	+		DZA65_RS06705	0.35	-0.7
1,390,303	+		DZA65_RS06705	0.35	-0.0
1,390,303	+		DZA65_RS06705	0.35	+0.4
1,390,304	-		DZA65_RS06705	0.35	-0.5
1,390,304	-		DZA65_RS06705	0.35	-1.7
1,390,304	-		DZA65_RS06705	0.35	-0.4
1,390,304	-		DZA65_RS06705	0.35	+0.8
1,390,304	-		DZA65_RS06705	0.35	-0.4
1,390,304	-		DZA65_RS06705	0.35	-0.3
1,390,304	-		DZA65_RS06705	0.35	+1.6
1,390,304	-		DZA65_RS06705	0.35	-0.6
1,390,304	-		DZA65_RS06705	0.35	+0.1
1,390,304	-		DZA65_RS06705	0.35	-2.2
1,390,304	-		DZA65_RS06705	0.35	-0.4
1,390,321	+		DZA65_RS06705	0.36	-0.9
1,390,321	+		DZA65_RS06705	0.36	-0.2
1,390,321	+		DZA65_RS06705	0.36	+0.0
1,390,321	+		DZA65_RS06705	0.36	-0.6
1,390,321	+		DZA65_RS06705	0.36	-1.6
1,390,321	+		DZA65_RS06705	0.36	+1.6
1,390,321	+		DZA65_RS06705	0.36	+0.3
1,390,321	+		DZA65_RS06705	0.36	+0.5
1,390,321	+		DZA65_RS06705	0.36	+0.6
1,390,321	+		DZA65_RS06705	0.36	-1.2
1,390,321	+		DZA65_RS06705	0.36	+0.0
1,390,321	+		DZA65_RS06705	0.36	+1.6
1,390,321	+		DZA65_RS06705	0.36	+0.5
1,390,322	-		DZA65_RS06705	0.36	+0.6
1,390,322	-		DZA65_RS06705	0.36	-1.6
1,390,322	-		DZA65_RS06705	0.36	+0.6
1,390,322	-		DZA65_RS06705	0.36	-0.0
1,390,322	-		DZA65_RS06705	0.36	+1.4
1,390,322	-		DZA65_RS06705	0.36	+1.0
1,390,324	-		DZA65_RS06705	0.36	-0.6
1,390,350	+		DZA65_RS06705	0.38	-0.1
1,390,351	-		DZA65_RS06705	0.38	-0.8
1,390,351	-		DZA65_RS06705	0.38	+0.9
1,390,351	-		DZA65_RS06705	0.38	-0.5
1,390,351	-		DZA65_RS06705	0.38	-0.2
1,390,380	+		DZA65_RS06705	0.40	+0.3
1,390,384	+		DZA65_RS06705	0.41	+0.1
1,390,384	+		DZA65_RS06705	0.41	+1.1
1,390,384	+		DZA65_RS06705	0.41	+2.4
1,390,384	+		DZA65_RS06705	0.41	+0.6
1,390,384	+		DZA65_RS06705	0.41	-0.1
1,390,384	+		DZA65_RS06705	0.41	-0.3
1,390,384	+		DZA65_RS06705	0.41	-0.2
1,390,384	+		DZA65_RS06705	0.41	+0.4
1,390,384	+		DZA65_RS06705	0.41	-0.3
1,390,385	-		DZA65_RS06705	0.41	+0.4
1,390,385	-		DZA65_RS06705	0.41	+0.1
1,390,385	-		DZA65_RS06705	0.41	+0.2
1,390,385	-		DZA65_RS06705	0.41	-0.4
1,390,385	-		DZA65_RS06705	0.41	-0.0
1,390,385	-		DZA65_RS06705	0.41	+0.4
1,390,385	-		DZA65_RS06705	0.41	+0.4
1,390,385	-		DZA65_RS06705	0.41	-0.9
1,390,385	-		DZA65_RS06705	0.41	+0.8
1,390,385	-		DZA65_RS06705	0.41	+0.5
1,390,385	-		DZA65_RS06705	0.41	+3.7
1,390,385	-		DZA65_RS06705	0.41	+0.5
1,390,385	-		DZA65_RS06705	0.41	+0.0
1,390,385	-		DZA65_RS06705	0.41	-1.9
1,390,385	-		DZA65_RS06705	0.41	-0.5
1,390,479	+		DZA65_RS06705	0.47	-0.9
1,390,480	-		DZA65_RS06705	0.47	+1.3
1,390,603	+		DZA65_RS06705	0.55	+2.3
1,390,603	+		DZA65_RS06705	0.55	+0.7
1,390,603	+		DZA65_RS06705	0.55	+0.4
1,390,603	+		DZA65_RS06705	0.55	-0.2
1,390,604	-		DZA65_RS06705	0.55	-1.6
1,390,687	-		DZA65_RS06705	0.61	+1.8
1,390,732	+		DZA65_RS06705	0.64	+0.8
1,390,732	+		DZA65_RS06705	0.64	+1.0
1,390,732	+		DZA65_RS06705	0.64	+0.1
1,390,732	+		DZA65_RS06705	0.64	-0.3
1,390,732	+		DZA65_RS06705	0.64	-0.2
1,390,732	+		DZA65_RS06705	0.64	-0.2
1,390,732	+		DZA65_RS06705	0.64	+2.8
1,390,733	-		DZA65_RS06705	0.64	+0.4
1,390,733	-		DZA65_RS06705	0.64	-0.6
1,390,733	-		DZA65_RS06705	0.64	+0.0
1,390,733	-		DZA65_RS06705	0.64	-1.2
1,390,733	-		DZA65_RS06705	0.64	+1.3
1,390,733	-		DZA65_RS06705	0.64	+1.7
1,390,733	-		DZA65_RS06705	0.64	-0.9
1,390,733	-		DZA65_RS06705	0.64	+0.5
1,390,733	-		DZA65_RS06705	0.64	-0.2
1,390,733	-		DZA65_RS06705	0.64	+0.4
1,390,733	-		DZA65_RS06705	0.64	-1.0
1,390,733	-		DZA65_RS06705	0.64	-0.0
1,390,766	+		DZA65_RS06705	0.66	-0.0
1,390,770	+		DZA65_RS06705	0.67	-0.1
1,390,827	+		DZA65_RS06705	0.71	-0.5
1,390,827	+		DZA65_RS06705	0.71	-0.3
1,390,828	-		DZA65_RS06705	0.71	+0.7
1,390,839	+		DZA65_RS06705	0.71	+1.0
1,390,839	+		DZA65_RS06705	0.71	-0.7
1,390,839	+		DZA65_RS06705	0.71	-0.2
1,390,840	-		DZA65_RS06705	0.71	+0.0
1,390,840	-		DZA65_RS06705	0.71	+0.4
1,390,845	+		DZA65_RS06705	0.72	+1.7
1,390,867	+		DZA65_RS06705	0.73	+0.8
1,390,867	+		DZA65_RS06705	0.73	+0.4
1,390,867	+		DZA65_RS06705	0.73	+1.4
1,390,867	+		DZA65_RS06705	0.73	-0.0
1,390,867	+		DZA65_RS06705	0.73	-1.1
1,390,867	+		DZA65_RS06705	0.73	+0.4
1,390,867	+		DZA65_RS06705	0.73	-0.6
1,390,867	+		DZA65_RS06705	0.73	-1.2
1,390,867	+		DZA65_RS06705	0.73	-1.9
1,390,868	-		DZA65_RS06705	0.73	-1.8
1,390,868	-		DZA65_RS06705	0.73	+0.4
1,390,868	-		DZA65_RS06705	0.73	-0.8
1,390,868	-		DZA65_RS06705	0.73	-0.2
1,390,868	-		DZA65_RS06705	0.73	+2.0
1,390,906	+		DZA65_RS06705	0.76	+1.1
1,390,906	+		DZA65_RS06705	0.76	+1.0
1,390,906	+		DZA65_RS06705	0.76	+1.6
1,390,906	+		DZA65_RS06705	0.76	+1.2
1,390,906	+		DZA65_RS06705	0.76	+1.0
1,390,906	+		DZA65_RS06705	0.76	-1.0
1,390,906	+		DZA65_RS06705	0.76	+0.6
1,390,906	+		DZA65_RS06705	0.76	-0.0
1,390,907	-		DZA65_RS06705	0.76	+2.0
1,390,907	-		DZA65_RS06705	0.76	-0.2
1,390,907	-		DZA65_RS06705	0.76	+0.6
1,390,907	-		DZA65_RS06705	0.76	+0.7
1,390,907	-		DZA65_RS06705	0.76	-0.9
1,390,907	-		DZA65_RS06705	0.76	+1.0
1,390,907	-		DZA65_RS06705	0.76	+0.3
1,390,907	-		DZA65_RS06705	0.76	-1.2
1,390,907	-		DZA65_RS06705	0.76	-0.7
1,390,907	-		DZA65_RS06705	0.76	-0.6
1,390,907	-		DZA65_RS06705	0.76	+0.9
1,391,065	-		DZA65_RS06705	0.87	+0.7
1,391,148	+				-1.3
1,391,237	+				+0.1
1,391,302	+				-0.3
1,391,302	+				+1.2
1,391,302	+				-1.9
1,391,302	+				-0.1
1,391,302	+				-0.8
1,391,302	+				-0.3
1,391,302	+				+0.5
1,391,303	-				-2.6
1,391,303	-				+1.3
1,391,303	-				+0.0
1,391,306	+				+0.9
1,391,306	+				-0.3
1,391,306	+				+0.8
1,391,306	+				+0.4
1,391,307	-				-0.8
1,391,307	-				-0.4
1,391,307	-				-1.9
1,391,312	+				-0.3
1,391,312	+				-2.2
1,391,313	-				+2.5
1,391,333	-				+1.2