Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06370

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,325,456	-		DZA65_RS06365	0.64	+1.1
1,325,589	+		DZA65_RS06365	0.70	+0.0
1,325,590	-		DZA65_RS06365	0.70	-0.8
1,325,925	+		DZA65_RS06365	0.83	-2.9
1,325,925	+		DZA65_RS06365	0.83	+0.0
1,325,926	-		DZA65_RS06365	0.83	-0.2
1,325,926	-		DZA65_RS06365	0.83	+1.1
1,325,999	+		DZA65_RS06365	0.86	-1.9
1,325,999	+		DZA65_RS06365	0.86	-0.2
1,325,999	+		DZA65_RS06365	0.86	-0.9
1,326,000	-		DZA65_RS06365	0.86	+0.4
1,326,025	-		DZA65_RS06365	0.87	+0.4
1,326,048	+		DZA65_RS06365	0.88	-0.8
1,326,049	-		DZA65_RS06365	0.88	-0.4
1,326,093	+				-0.4
1,326,094	-				+0.3
1,326,167	+				-1.6
1,326,265	+				-0.7
1,326,265	+				-0.7
1,326,341	-				+0.7
1,326,341	-				-0.2
1,326,387	-				+0.4
1,326,427	+				-0.4
1,326,481	+				+0.4
1,326,481	+				-0.1
1,326,481	+				-1.4
1,326,481	+				-0.4
1,326,481	+				+0.8
1,326,481	+				-1.2
1,326,481	+				-1.9
1,326,481	+				-0.3
1,326,481	+				+0.5
1,326,482	-				-1.4
1,326,482	-				-0.6
1,326,482	-				+1.2
1,326,482	-				-0.0
1,326,482	-				-1.2
1,326,482	-				-0.8
1,326,482	-				+0.6
1,326,482	-				+0.4
1,326,482	-				+1.0
1,326,505	+				+0.1
1,326,508	+				+1.6
1,326,508	+				-0.3
1,326,508	+				-0.8
1,326,508	+				-0.2
1,326,508	+				-0.2
1,326,508	+				+0.1
1,326,508	+				-2.2
1,326,508	+				+0.0
1,326,508	+				-0.3
1,326,508	+				+0.9
1,326,508	+				+0.7
1,326,508	+				-1.2
1,326,508	+				-0.2
1,326,508	+				-1.0
1,326,508	+				-0.6
1,326,508	+				+0.2
1,326,508	+				+0.3
1,326,508	+				+0.4
1,326,508	+				+1.1
1,326,508	+				+0.9
1,326,508	+				+0.8
1,326,509	-				-0.6
1,326,509	-				-0.6
1,326,509	-				-1.6
1,326,509	-				+0.9
1,326,509	-				+0.3
1,326,509	-				-0.4
1,326,509	-				-0.2
1,326,509	-				+0.2
1,326,509	-				+1.0
1,326,509	-				+1.4
1,326,509	-				+0.2
1,326,556	+				+0.8
1,326,557	-				-0.3
1,326,575	+				-0.3
1,326,575	+				+0.2
1,326,577	+				-0.6
1,326,578	-				-1.9
1,326,578	-				-0.8
1,326,604	+				-0.4
1,326,604	+				-1.6
1,326,604	+				+0.0
1,326,605	-				+0.0
1,326,605	-				+0.7
1,326,605	-				+0.8
1,326,656	-		DZA65_RS06370	0.10	-1.2
1,326,814	+		DZA65_RS06370	0.18	-0.5
1,326,814	+		DZA65_RS06370	0.18	-0.8
1,326,814	+		DZA65_RS06370	0.18	-0.9
1,326,814	+		DZA65_RS06370	0.18	-1.9
1,326,814	+		DZA65_RS06370	0.18	+1.2
1,326,815	-		DZA65_RS06370	0.18	-0.5
1,326,815	-		DZA65_RS06370	0.18	-0.8
1,326,815	-		DZA65_RS06370	0.18	+0.7
1,326,815	-		DZA65_RS06370	0.18	+0.2
1,326,815	-		DZA65_RS06370	0.18	+0.1
1,326,941	+		DZA65_RS06370	0.23	-1.9
1,326,942	-		DZA65_RS06370	0.23	+0.4
1,326,960	+		DZA65_RS06370	0.24	-0.6
1,326,960	+		DZA65_RS06370	0.24	-0.6
1,326,960	+		DZA65_RS06370	0.24	-2.4
1,326,961	-		DZA65_RS06370	0.24	+1.4
1,326,961	-		DZA65_RS06370	0.24	+1.0
1,327,015	+		DZA65_RS06370	0.27	+0.2
1,327,015	+		DZA65_RS06370	0.27	+0.1
1,327,015	+		DZA65_RS06370	0.27	-1.2
1,327,016	-		DZA65_RS06370	0.27	+0.0
1,327,016	-		DZA65_RS06370	0.27	-0.2
1,327,016	-		DZA65_RS06370	0.27	+0.8
1,327,051	-		DZA65_RS06370	0.28	+0.6
1,327,051	-		DZA65_RS06370	0.28	-0.4
1,327,051	-		DZA65_RS06370	0.28	-0.2
1,327,058	+		DZA65_RS06370	0.29	+1.1
1,327,058	+		DZA65_RS06370	0.29	+0.8
1,327,059	-		DZA65_RS06370	0.29	-0.4
1,327,093	+		DZA65_RS06370	0.30	+0.2
1,327,094	-		DZA65_RS06370	0.30	-0.5
1,327,102	+		DZA65_RS06370	0.31	+0.1
1,327,102	+		DZA65_RS06370	0.31	-0.0
1,327,103	-		DZA65_RS06370	0.31	+0.3
1,327,103	-		DZA65_RS06370	0.31	-0.2
1,327,103	-		DZA65_RS06370	0.31	-0.7
1,327,129	+		DZA65_RS06370	0.32	+0.8
1,327,129	+		DZA65_RS06370	0.32	-0.2
1,327,129	+				+1.2
1,327,129	+		DZA65_RS06370	0.32	-0.4
1,327,129	+		DZA65_RS06370	0.32	-1.9
1,327,129	+		DZA65_RS06370	0.32	+0.1
1,327,130	-		DZA65_RS06370	0.32	+0.4
1,327,130	-		DZA65_RS06370	0.32	+0.7
1,327,130	-		DZA65_RS06370	0.32	-0.7
1,327,176	-		DZA65_RS06370	0.34	+0.4
1,327,230	+		DZA65_RS06370	0.37	-0.5
1,327,231	-		DZA65_RS06370	0.37	+0.2
1,327,361	-		DZA65_RS06370	0.42	+0.9
1,327,361	-		DZA65_RS06370	0.42	+0.4
1,327,372	+		DZA65_RS06370	0.43	-1.6
1,327,372	+				+0.0
1,327,373	-		DZA65_RS06370	0.43	+0.6
1,327,373	-		DZA65_RS06370	0.43	+0.8
1,327,373	-		DZA65_RS06370	0.43	+1.3
1,327,373	-		DZA65_RS06370	0.43	+0.4
1,327,376	+		DZA65_RS06370	0.43	+0.4
1,327,377	-		DZA65_RS06370	0.43	-1.0
1,327,377	-		DZA65_RS06370	0.43	-0.0
1,327,377	-		DZA65_RS06370	0.43	-0.9
1,327,377	-		DZA65_RS06370	0.43	+0.1
1,327,379	+		DZA65_RS06370	0.43	+1.3
1,327,379	+		DZA65_RS06370	0.43	+2.8
1,327,379	+		DZA65_RS06370	0.43	+0.6
1,327,388	+		DZA65_RS06370	0.44	+0.3
1,327,389	-		DZA65_RS06370	0.44	+1.3
1,327,409	+		DZA65_RS06370	0.45	+0.6
1,327,409	+		DZA65_RS06370	0.45	-0.8
1,327,409	+		DZA65_RS06370	0.45	+0.0
1,327,410	-		DZA65_RS06370	0.45	+0.5
1,327,410	-		DZA65_RS06370	0.45	-0.3
1,327,410	-		DZA65_RS06370	0.45	-0.1
1,327,410	-		DZA65_RS06370	0.45	-1.0
1,327,410	-		DZA65_RS06370	0.45	+1.0
1,327,410	-		DZA65_RS06370	0.45	+0.3
1,327,410	-		DZA65_RS06370	0.45	-2.2
1,327,410	-		DZA65_RS06370	0.45	+0.8
1,327,410	-		DZA65_RS06370	0.45	+0.1
1,327,412	+		DZA65_RS06370	0.45	+0.4
1,327,560	+		DZA65_RS06370	0.51	+1.6
1,327,560	+		DZA65_RS06370	0.51	+1.1
1,327,561	-		DZA65_RS06370	0.52	+0.5
1,327,577	+		DZA65_RS06370	0.52	-0.7
1,327,578	-		DZA65_RS06370	0.52	-0.0
1,327,609	+		DZA65_RS06370	0.54	+0.7
1,327,609	+		DZA65_RS06370	0.54	-1.4
1,327,609	+		DZA65_RS06370	0.54	+0.6
1,327,609	+		DZA65_RS06370	0.54	-1.3
1,327,609	+		DZA65_RS06370	0.54	-0.3
1,327,609	+		DZA65_RS06370	0.54	-0.7
1,327,610	-		DZA65_RS06370	0.54	+0.0
1,327,610	-		DZA65_RS06370	0.54	+1.5
1,327,610	-		DZA65_RS06370	0.54	+0.3
1,327,624	+		DZA65_RS06370	0.54	+2.2
1,327,630	+		DZA65_RS06370	0.55	-0.9
1,327,630	+		DZA65_RS06370	0.55	-0.3
1,327,630	+		DZA65_RS06370	0.55	+0.2
1,327,630	+		DZA65_RS06370	0.55	-0.3
1,327,631	-		DZA65_RS06370	0.55	+0.3
1,327,631	-		DZA65_RS06370	0.55	+0.2
1,327,631	-		DZA65_RS06370	0.55	+0.9
1,327,631	-		DZA65_RS06370	0.55	-0.6
1,327,714	+		DZA65_RS06370	0.58	+0.9
1,327,714	+		DZA65_RS06370	0.58	+0.4
1,327,714	+		DZA65_RS06370	0.58	+0.8
1,327,714	+		DZA65_RS06370	0.58	+0.7
1,327,714	+		DZA65_RS06370	0.58	+0.1
1,327,714	+		DZA65_RS06370	0.58	-0.4
1,327,715	-		DZA65_RS06370	0.59	-0.0
1,327,715	-		DZA65_RS06370	0.59	-1.4
1,327,715	-		DZA65_RS06370	0.59	+0.3
1,327,715	-		DZA65_RS06370	0.59	-0.9
1,327,804	+		DZA65_RS06370	0.63	+0.8
1,327,804	+		DZA65_RS06370	0.63	+0.2
1,327,804	+		DZA65_RS06370	0.63	-0.1
1,327,804	+		DZA65_RS06370	0.63	+0.1
1,327,805	-		DZA65_RS06370	0.63	-1.8
1,327,819	+		DZA65_RS06370	0.63	+0.4
1,327,820	-		DZA65_RS06370	0.63	-2.2
1,327,831	-		DZA65_RS06370	0.64	+0.6
1,327,831	-		DZA65_RS06370	0.64	+0.8
1,327,850	-		DZA65_RS06370	0.65	+0.1
1,328,093	-		DZA65_RS06370	0.76	+2.1
1,328,093	-		DZA65_RS06370	0.76	+0.1
1,328,094	+		DZA65_RS06370	0.76	-0.3
1,328,094	+		DZA65_RS06370	0.76	+2.4
1,328,095	-				-0.3
1,328,095	-		DZA65_RS06370	0.76	-0.3
1,328,278	+		DZA65_RS06370	0.84	+1.2
1,328,278	+		DZA65_RS06370	0.84	+0.1
1,328,278	+		DZA65_RS06370	0.84	+0.4
1,328,278	+		DZA65_RS06370	0.84	-0.7
1,328,278	+		DZA65_RS06370	0.84	+1.3
1,328,278	+		DZA65_RS06370	0.84	-0.2
1,328,278	+		DZA65_RS06370	0.84	-1.6
1,328,278	+		DZA65_RS06370	0.84	-0.4
1,328,278	+		DZA65_RS06370	0.84	+1.0
1,328,278	+		DZA65_RS06370	0.84	+0.1
1,328,278	+		DZA65_RS06370	0.84	-0.4
1,328,278	+		DZA65_RS06370	0.84	-0.8
1,328,278	+		DZA65_RS06370	0.84	+1.3
1,328,278	+		DZA65_RS06370	0.84	-1.2
1,328,279	-		DZA65_RS06370	0.84	-0.7
1,328,279	-		DZA65_RS06370	0.84	+3.0
1,328,279	-		DZA65_RS06370	0.84	+1.2
1,328,279	-		DZA65_RS06370	0.84	-0.7
1,328,279	-		DZA65_RS06370	0.84	+0.7
1,328,279	-		DZA65_RS06370	0.84	-1.4
1,328,279	-		DZA65_RS06370	0.84	-0.3
1,328,279	-		DZA65_RS06370	0.84	-0.6
1,328,279	-		DZA65_RS06370	0.84	-0.3
1,328,279	-		DZA65_RS06370	0.84	+0.8
1,328,279	-		DZA65_RS06370	0.84	+0.0
1,328,353	-		DZA65_RS06370	0.88	-1.6
1,328,353	-		DZA65_RS06370	0.88	-0.0
1,328,513	+				-0.8
1,328,525	+				+1.3
1,328,526	-				-0.4
1,328,526	-				-0.7
1,328,528	+				+0.4
1,328,528	+				+0.3
1,328,529	-				-0.2
1,328,529	-				+0.3
1,328,529	-				-0.3
1,328,529	-				-0.2
1,328,529	-				+0.3
1,328,540	+				-0.1
1,328,540	+				-0.6
1,328,540	+				+0.2
1,328,541	-				-0.4
1,328,541	-				-0.2
1,328,541	-				+0.7
1,328,543	+				+0.4
1,328,544	-				-1.6
1,328,555	+				-0.9
1,328,555	+				+0.2
1,328,555	+				-0.6
1,328,556	-				-0.6
1,328,556	-				+0.3
1,328,559	-				+0.8
1,328,622	-				+0.3
1,328,622	-				+0.7
1,328,622	-				+0.7
1,328,645	+				+0.3
1,328,645	+				+1.5
1,328,645	+				-0.1
1,328,692	+				-1.2
1,328,692	+				-2.2
1,328,693	-				-0.6
1,328,784	-		DZA65_RS06375	0.15	+0.9
1,328,784	-		DZA65_RS06375	0.15	+0.4
1,328,963	+		DZA65_RS06375	0.31	+0.2
1,328,963	+		DZA65_RS06375	0.31	-1.0
1,328,963	+		DZA65_RS06375	0.31	-1.8
1,328,963	+		DZA65_RS06375	0.31	+0.4
1,328,963	+		DZA65_RS06375	0.31	-0.0
1,328,964	-		DZA65_RS06375	0.31	+1.2
1,328,964	-		DZA65_RS06375	0.31	-1.7
1,328,964	-		DZA65_RS06375	0.31	+0.4
1,328,964	-		DZA65_RS06375	0.31	-0.6
1,328,964	-		DZA65_RS06375	0.31	-1.4
1,329,011	+		DZA65_RS06375	0.35	-0.8
1,329,012	-		DZA65_RS06375	0.35	-0.8
1,329,012	-		DZA65_RS06375	0.35	+0.8
1,329,013	+		DZA65_RS06375	0.35	+0.0
1,329,013	+		DZA65_RS06375	0.35	+1.3
1,329,013	+		DZA65_RS06375	0.35	-0.8
1,329,013	+		DZA65_RS06375	0.35	+0.1
1,329,013	+		DZA65_RS06375	0.35	-1.2
1,329,014	-		DZA65_RS06375	0.35	-1.3
1,329,159	-		DZA65_RS06375	0.49	+1.0
1,329,178	+		DZA65_RS06375	0.50	-1.0
1,329,179	-		DZA65_RS06375	0.50	+0.2
1,329,179	-		DZA65_RS06375	0.50	-0.2
1,329,179	-		DZA65_RS06375	0.50	+1.8
1,329,179	-		DZA65_RS06375	0.50	-0.3
1,329,200	+		DZA65_RS06375	0.52	-2.6
1,329,200	+		DZA65_RS06375	0.52	-0.6
1,329,201	-		DZA65_RS06375	0.52	+0.4
1,329,210	+		DZA65_RS06375	0.53	+0.4
1,329,210	+		DZA65_RS06375	0.53	+1.8
1,329,211	-		DZA65_RS06375	0.53	+0.8
1,329,305	+		DZA65_RS06375	0.62	+1.2
1,329,305	+		DZA65_RS06375	0.62	+2.0
1,329,305	+		DZA65_RS06375	0.62	+0.7
1,329,305	+		DZA65_RS06375	0.62	-0.1
1,329,305	+		DZA65_RS06375	0.62	+0.9
1,329,305	+		DZA65_RS06375	0.62	+0.1
1,329,305	+				-0.2
1,329,305	+		DZA65_RS06375	0.62	+1.2
1,329,305	+		DZA65_RS06375	0.62	-0.3
1,329,305	+		DZA65_RS06375	0.62	+0.0
1,329,305	+		DZA65_RS06375	0.62	+0.4
1,329,305	+		DZA65_RS06375	0.62	-0.7
1,329,305	+		DZA65_RS06375	0.62	-3.9
1,329,305	+		DZA65_RS06375	0.62	+2.4
1,329,305	+		DZA65_RS06375	0.62	+1.0
1,329,305	+		DZA65_RS06375	0.62	-2.3
1,329,305	+		DZA65_RS06375	0.62	-0.4
1,329,305	+		DZA65_RS06375	0.62	+0.2
1,329,305	+		DZA65_RS06375	0.62	+0.4
1,329,305	+		DZA65_RS06375	0.62	+0.1
1,329,305	+		DZA65_RS06375	0.62	-1.1
1,329,305	+		DZA65_RS06375	0.62	-0.4
1,329,305	+		DZA65_RS06375	0.62	+0.1
1,329,306	-		DZA65_RS06375	0.62	+1.6
1,329,306	-		DZA65_RS06375	0.62	+0.1
1,329,306	-		DZA65_RS06375	0.62	+0.1
1,329,306	-		DZA65_RS06375	0.62	+0.4
1,329,306	-		DZA65_RS06375	0.62	-0.6
1,329,306	-		DZA65_RS06375	0.62	+0.9
1,329,306	-		DZA65_RS06375	0.62	+0.1
1,329,306	-		DZA65_RS06375	0.62	-1.6
1,329,306	-		DZA65_RS06375	0.62	-0.2
1,329,306	-		DZA65_RS06375	0.62	+0.7
1,329,306	-		DZA65_RS06375	0.62	-0.6
1,329,306	-		DZA65_RS06375	0.62	-2.3
1,329,306	-		DZA65_RS06375	0.62	-0.9
1,329,306	-		DZA65_RS06375	0.62	-0.1
1,329,306	-		DZA65_RS06375	0.62	-2.2
1,329,306	-		DZA65_RS06375	0.62	+0.2
1,329,306	-		DZA65_RS06375	0.62	+0.8
1,329,306	-		DZA65_RS06375	0.62	+1.0
1,329,309	+		DZA65_RS06375	0.62	+0.3
1,329,309	+		DZA65_RS06375	0.62	-0.6
1,329,309	+		DZA65_RS06375	0.62	-1.9
1,329,309	+		DZA65_RS06375	0.62	-0.2
1,329,309	+		DZA65_RS06375	0.62	+0.6
1,329,309	+		DZA65_RS06375	0.62	+0.4
1,329,309	+		DZA65_RS06375	0.62	-0.8
1,329,309	+		DZA65_RS06375	0.62	+0.6
1,329,309	+		DZA65_RS06375	0.62	-0.3
1,329,309	+		DZA65_RS06375	0.62	-1.0
1,329,310	-		DZA65_RS06375	0.62	+0.4
1,329,310	-		DZA65_RS06375	0.62	+0.0
1,329,310	-		DZA65_RS06375	0.62	+0.9
1,329,310	-		DZA65_RS06375	0.62	+2.0
1,329,310	-		DZA65_RS06375	0.62	+1.0
1,329,310	-		DZA65_RS06375	0.62	+0.1
1,329,310	-		DZA65_RS06375	0.62	-1.4
1,329,310	-		DZA65_RS06375	0.62	+0.2
1,329,310	-		DZA65_RS06375	0.62	-1.1
1,329,310	-		DZA65_RS06375	0.62	-1.2
1,329,310	-		DZA65_RS06375	0.62	+0.4
1,329,311	+		DZA65_RS06375	0.62	-0.2
1,329,311	+		DZA65_RS06375	0.62	-0.1
1,329,311	+		DZA65_RS06375	0.62	-0.6
1,329,311	+		DZA65_RS06375	0.62	-0.2
1,329,312	-		DZA65_RS06375	0.62	+0.7
1,329,312	-		DZA65_RS06375	0.62	+0.1
1,329,312	-		DZA65_RS06375	0.62	-0.2
1,329,312	-		DZA65_RS06375	0.62	+0.8
1,329,312	-		DZA65_RS06375	0.62	-1.8
1,329,403	+		DZA65_RS06375	0.71	+0.4
1,329,491	+		DZA65_RS06375	0.78	+0.7
1,329,492	-		DZA65_RS06375	0.79	-1.6
1,329,492	-		DZA65_RS06375	0.79	-0.0
1,329,585	+		DZA65_RS06375	0.87	+1.3
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1,329,585	+		DZA65_RS06375	0.87	-0.1
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1,329,585	+		DZA65_RS06375	0.87	+1.8
1,329,585	+		DZA65_RS06375	0.87	-1.3
1,329,585	+		DZA65_RS06375	0.87	-0.8
1,329,585	+		DZA65_RS06375	0.87	+0.1
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1,329,585	+		DZA65_RS06375	0.87	+0.6
1,329,585	+		DZA65_RS06375	0.87	+0.2
1,329,585	+		DZA65_RS06375	0.87	+0.3
1,329,585	+		DZA65_RS06375	0.87	-2.0
1,329,586	-		DZA65_RS06375	0.87	+0.6
1,329,586	-		DZA65_RS06375	0.87	+0.4
1,329,586	-		DZA65_RS06375	0.87	-0.4
1,329,587	+		DZA65_RS06375	0.87	+2.0
1,329,587	+		DZA65_RS06375	0.87	+0.0
1,329,587	+		DZA65_RS06375	0.87	+0.6
1,329,592	+		DZA65_RS06375	0.88	-0.9
1,329,592	+		DZA65_RS06375	0.88	+1.0
1,329,593	-		DZA65_RS06375	0.88	+0.1
1,329,593	-		DZA65_RS06375	0.88	-2.4
1,329,593	-		DZA65_RS06375	0.88	-0.5