Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06300

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS06295 and DZA65_RS06300 overlap by 1 nucleotidesDZA65_RS06300 and DZA65_RS06305 overlap by 17 nucleotidesDZA65_RS06305 and DZA65_RS06310 overlap by 1 nucleotides DZA65_RS06295: DZA65_RS06295 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 1,311,382 to 1,313,058 _RS06295 DZA65_RS06300: DZA65_RS06300 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,313,058 to 1,313,849 _RS06300 DZA65_RS06305: DZA65_RS06305 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,313,833 to 1,314,690 _RS06305 DZA65_RS06310: DZA65_RS06310 - o-succinylbenzoate synthase, at 1,314,690 to 1,315,658 _RS06310 Position (kb) 1313 1314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.268 kb on + strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.269 kb on - strand, within DZA65_RS06295at 1312.300 kb on + strand, within DZA65_RS06295at 1312.615 kb on + strand, within DZA65_RS06295at 1312.616 kb on - strand, within DZA65_RS06295at 1312.726 kb on + strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.727 kb on - strand, within DZA65_RS06295at 1312.818 kb on - strand, within DZA65_RS06295at 1312.820 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strand, within DZA65_RS06295at 1312.852 kb on + strandat 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.853 kb on - strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.857 kb on + strand, within DZA65_RS06295at 1312.858 kb on - strand, within DZA65_RS06295at 1312.858 kb on - strand, within DZA65_RS06295at 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.977 kb on + strandat 1312.978 kb on - strandat 1312.978 kb on - strandat 1312.978 kb on - strandat 1313.161 kb on - strand, within DZA65_RS06300at 1313.161 kb on - strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.334 kb on + strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.335 kb on - strand, within DZA65_RS06300at 1313.481 kb on - strand, within DZA65_RS06300at 1313.500 kb on - strand, within DZA65_RS06300at 1313.557 kb on + strand, within DZA65_RS06300at 1313.558 kb on - strand, within DZA65_RS06300at 1313.558 kb on - strand, within DZA65_RS06300at 1313.611 kb on + strand, within DZA65_RS06300at 1313.611 kb on + strand, within DZA65_RS06300at 1313.612 kb on - strand, within DZA65_RS06300at 1313.612 kb on - strand, within DZA65_RS06300at 1313.650 kb on + strand, within DZA65_RS06300at 1313.651 kb on - strand, within DZA65_RS06300at 1313.667 kb on + strand, within DZA65_RS06300at 1313.781 kb on + strandat 1313.782 kb on - strandat 1313.832 kb on + strandat 1313.833 kb on - strandat 1313.833 kb on - strandat 1313.861 kb on - strandat 1313.911 kb on + strandat 1313.990 kb on + strand, within DZA65_RS06305at 1314.340 kb on + strand, within DZA65_RS06305at 1314.340 kb on + strand, within DZA65_RS06305at 1314.340 kb on + strand, within DZA65_RS06305at 1314.340 kb on + strandat 1314.340 kb on + strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.341 kb on - strand, within DZA65_RS06305at 1314.400 kb on + strand, within DZA65_RS06305at 1314.400 kb on + strand, within DZA65_RS06305at 1314.400 kb on + strand, within DZA65_RS06305at 1314.401 kb on - strand, within DZA65_RS06305at 1314.401 kb on - strand, within DZA65_RS06305at 1314.401 kb on - strand, within DZA65_RS06305at 1314.401 kb on - strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.604 kb on + strand, within DZA65_RS06305at 1314.605 kb on - strandat 1314.605 kb on - strandat 1314.605 kb on - strandat 1314.605 kb on - strandat 1314.714 kb on + strandat 1314.750 kb on - strandat 1314.782 kb on + strandat 1314.783 kb on - strandat 1314.783 kb on - strandat 1314.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,312,268 + DZA65_RS06295 0.53 -2.6
1,312,268 + DZA65_RS06295 0.53 +0.6
1,312,268 + DZA65_RS06295 0.53 -0.6
1,312,268 + DZA65_RS06295 0.53 +0.8
1,312,269 - DZA65_RS06295 0.53 -1.6
1,312,269 - DZA65_RS06295 0.53 +0.4
1,312,269 - DZA65_RS06295 0.53 -1.0
1,312,269 - DZA65_RS06295 0.53 -0.3
1,312,300 + DZA65_RS06295 0.55 +0.3
1,312,615 + DZA65_RS06295 0.74 -0.1
1,312,616 - DZA65_RS06295 0.74 -1.7
1,312,726 + DZA65_RS06295 0.80 +0.8
1,312,727 - DZA65_RS06295 0.80 -0.2
1,312,727 - DZA65_RS06295 0.80 +1.4
1,312,727 - DZA65_RS06295 0.80 +0.1
1,312,727 - DZA65_RS06295 0.80 -0.6
1,312,818 - DZA65_RS06295 0.86 -1.6
1,312,820 + DZA65_RS06295 0.86 +0.8
1,312,852 + DZA65_RS06295 0.88 -0.9
1,312,852 + DZA65_RS06295 0.88 -1.4
1,312,852 + DZA65_RS06295 0.88 +1.2
1,312,852 + DZA65_RS06295 0.88 +0.4
1,312,852 + DZA65_RS06295 0.88 +1.3
1,312,852 + DZA65_RS06295 0.88 -1.4
1,312,852 + DZA65_RS06295 0.88 -0.4
1,312,852 + DZA65_RS06295 0.88 +0.1
1,312,852 + DZA65_RS06295 0.88 -0.8
1,312,852 + +0.4
1,312,853 - DZA65_RS06295 0.88 -0.9
1,312,853 - DZA65_RS06295 0.88 +0.7
1,312,853 - DZA65_RS06295 0.88 -0.8
1,312,853 - DZA65_RS06295 0.88 +0.2
1,312,853 - DZA65_RS06295 0.88 -0.4
1,312,853 - DZA65_RS06295 0.88 -0.7
1,312,853 - DZA65_RS06295 0.88 -0.2
1,312,853 - DZA65_RS06295 0.88 +0.2
1,312,853 - DZA65_RS06295 0.88 +0.2
1,312,853 - DZA65_RS06295 0.88 -0.6
1,312,853 - DZA65_RS06295 0.88 -1.6
1,312,853 - DZA65_RS06295 0.88 -2.4
1,312,857 + DZA65_RS06295 0.88 +0.4
1,312,857 + DZA65_RS06295 0.88 -0.8
1,312,857 + DZA65_RS06295 0.88 +2.0
1,312,858 - DZA65_RS06295 0.88 -1.2
1,312,858 - DZA65_RS06295 0.88 -0.1
1,312,977 + -0.3
1,312,977 + +1.1
1,312,977 + -0.6
1,312,977 + -1.2
1,312,977 + -0.2
1,312,977 + +1.0
1,312,978 - +0.3
1,312,978 - -0.6
1,312,978 - -0.6
1,313,161 - DZA65_RS06300 0.13 -1.0
1,313,161 - DZA65_RS06300 0.13 +0.8
1,313,334 + DZA65_RS06300 0.35 -0.4
1,313,334 + DZA65_RS06300 0.35 -0.6
1,313,334 + DZA65_RS06300 0.35 +0.2
1,313,334 + DZA65_RS06300 0.35 +0.4
1,313,334 + DZA65_RS06300 0.35 -1.3
1,313,335 - DZA65_RS06300 0.35 -0.3
1,313,335 - DZA65_RS06300 0.35 +1.2
1,313,335 - DZA65_RS06300 0.35 -2.9
1,313,335 - DZA65_RS06300 0.35 -1.7
1,313,335 - DZA65_RS06300 0.35 -0.7
1,313,335 - DZA65_RS06300 0.35 +1.1
1,313,335 - DZA65_RS06300 0.35 -0.2
1,313,481 - DZA65_RS06300 0.53 +0.0
1,313,500 - DZA65_RS06300 0.56 +0.4
1,313,557 + DZA65_RS06300 0.63 +1.4
1,313,558 - DZA65_RS06300 0.63 -0.0
1,313,558 - DZA65_RS06300 0.63 -1.1
1,313,611 + DZA65_RS06300 0.70 +0.8
1,313,611 + DZA65_RS06300 0.70 +0.4
1,313,612 - DZA65_RS06300 0.70 +1.1
1,313,612 - DZA65_RS06300 0.70 -1.7
1,313,650 + DZA65_RS06300 0.75 -0.4
1,313,651 - DZA65_RS06300 0.75 +0.8
1,313,667 + DZA65_RS06300 0.77 +0.0
1,313,781 + -1.1
1,313,782 - -0.2
1,313,832 + +0.4
1,313,833 - -1.4
1,313,833 - -1.2
1,313,861 - +1.1
1,313,911 + +0.0
1,313,990 + DZA65_RS06305 0.18 -1.3
1,314,340 + DZA65_RS06305 0.59 -0.6
1,314,340 + DZA65_RS06305 0.59 -1.3
1,314,340 + DZA65_RS06305 0.59 +1.8
1,314,340 + +0.0
1,314,340 + DZA65_RS06305 0.59 -0.3
1,314,341 - DZA65_RS06305 0.59 +0.3
1,314,341 - DZA65_RS06305 0.59 +0.0
1,314,341 - DZA65_RS06305 0.59 -1.2
1,314,341 - DZA65_RS06305 0.59 -1.2
1,314,341 - DZA65_RS06305 0.59 +0.8
1,314,341 - DZA65_RS06305 0.59 -0.9
1,314,341 - DZA65_RS06305 0.59 -0.9
1,314,400 + DZA65_RS06305 0.66 -1.2
1,314,400 + DZA65_RS06305 0.66 -1.2
1,314,400 + DZA65_RS06305 0.66 -0.6
1,314,401 - DZA65_RS06305 0.66 +4.0
1,314,401 - DZA65_RS06305 0.66 +1.8
1,314,401 - DZA65_RS06305 0.66 -0.3
1,314,401 - DZA65_RS06305 0.66 -0.3
1,314,604 + DZA65_RS06305 0.90 -0.2
1,314,604 + DZA65_RS06305 0.90 -0.3
1,314,604 + DZA65_RS06305 0.90 -1.2
1,314,604 + DZA65_RS06305 0.90 +0.4
1,314,604 + DZA65_RS06305 0.90 -0.1
1,314,604 + DZA65_RS06305 0.90 +0.2
1,314,605 - -0.2
1,314,605 - -0.2
1,314,605 - -0.5
1,314,605 - -2.7
1,314,714 + -0.9
1,314,750 - -1.6
1,314,782 + -1.6
1,314,783 - +0.9
1,314,783 - -1.4
1,314,783 - -0.9

Or see this region's nucleotide sequence