Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05805

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,193,665	+		DZA65_RS05800	0.77	-0.1
1,193,666	-		DZA65_RS05800	0.77	+2.9
1,193,666	-		DZA65_RS05800	0.77	-0.6
1,193,666	-		DZA65_RS05800	0.77	-0.6
1,193,670	+		DZA65_RS05800	0.77	-0.7
1,193,670	+				+1.2
1,193,698	+		DZA65_RS05800	0.78	-0.1
1,193,698	+		DZA65_RS05800	0.78	-0.9
1,193,698	+		DZA65_RS05800	0.78	-0.3
1,193,698	+		DZA65_RS05800	0.78	-0.6
1,193,699	-		DZA65_RS05800	0.78	+0.4
1,193,699	-		DZA65_RS05800	0.78	+0.8
1,193,699	-		DZA65_RS05800	0.78	-1.9
1,193,699	-		DZA65_RS05800	0.78	+0.7
1,193,699	-		DZA65_RS05800	0.78	-0.9
1,193,699	-		DZA65_RS05800	0.78	-0.4
1,193,699	-		DZA65_RS05800	0.78	-3.8
1,193,699	-		DZA65_RS05800	0.78	+0.8
1,193,768	+		DZA65_RS05800	0.80	-0.2
1,193,769	-		DZA65_RS05800	0.80	-0.2
1,193,769	-		DZA65_RS05800	0.80	-2.4
1,193,769	-		DZA65_RS05800	0.80	-0.3
1,193,969	+		DZA65_RS05800	0.85	-1.3
1,193,969	+		DZA65_RS05800	0.85	-2.4
1,193,969	+		DZA65_RS05800	0.85	-0.9
1,193,969	+				+3.9
1,193,970	-		DZA65_RS05800	0.85	-0.3
1,194,348	-				+0.0
1,194,348	-				+0.0
1,194,826	+		DZA65_RS05805	0.26	-0.3
1,194,826	+		DZA65_RS05805	0.26	-1.2
1,194,827	-		DZA65_RS05805	0.26	-1.0
1,194,876	+		DZA65_RS05805	0.30	-0.1
1,194,876	+		DZA65_RS05805	0.30	-0.1
1,194,876	+		DZA65_RS05805	0.30	-1.2
1,194,877	-		DZA65_RS05805	0.30	-0.1
1,194,955	+		DZA65_RS05805	0.36	-0.4
1,194,955	+		DZA65_RS05805	0.36	+0.4
1,194,955	+		DZA65_RS05805	0.36	+0.2
1,194,955	+		DZA65_RS05805	0.36	+1.7
1,194,955	+		DZA65_RS05805	0.36	+0.4
1,194,956	-		DZA65_RS05805	0.36	-1.3
1,194,956	-		DZA65_RS05805	0.36	-2.2
1,194,956	-		DZA65_RS05805	0.36	-0.1
1,194,956	-		DZA65_RS05805	0.36	-0.6
1,194,956	-		DZA65_RS05805	0.36	-2.0
1,194,956	-		DZA65_RS05805	0.36	-1.9
1,195,013	-		DZA65_RS05805	0.41	+1.7
1,195,055	+		DZA65_RS05805	0.44	+0.8
1,195,056	-		DZA65_RS05805	0.45	+4.3
1,195,073	-		DZA65_RS05805	0.46	+2.2
1,195,073	-		DZA65_RS05805	0.46	+1.4
1,195,073	-		DZA65_RS05805	0.46	-1.3
1,195,123	+		DZA65_RS05805	0.50	-0.8
1,195,123	+		DZA65_RS05805	0.50	-1.1
1,195,123	+		DZA65_RS05805	0.50	-0.9
1,195,123	+		DZA65_RS05805	0.50	+0.4
1,195,123	+		DZA65_RS05805	0.50	-0.7
1,195,124	-		DZA65_RS05805	0.50	-0.4
1,195,124	-		DZA65_RS05805	0.50	-0.7
1,195,127	+		DZA65_RS05805	0.50	-0.3
1,195,333	-		DZA65_RS05805	0.67	-1.0
1,195,333	-		DZA65_RS05805	0.67	-1.4
1,195,392	+		DZA65_RS05805	0.72	-1.7
1,195,393	-		DZA65_RS05805	0.72	+1.6
1,195,552	+		DZA65_RS05805	0.85	-1.2
1,195,553	-		DZA65_RS05805	0.85	+1.0
1,195,553	-		DZA65_RS05805	0.85	+0.8
1,195,553	-		DZA65_RS05805	0.85	-0.5
1,195,553	-		DZA65_RS05805	0.85	-0.9
1,195,553	-		DZA65_RS05805	0.85	-1.9
1,195,567	+		DZA65_RS05805	0.86	-0.2
1,195,567	+		DZA65_RS05805	0.86	-0.6
1,195,568	-		DZA65_RS05805	0.86	-0.9
1,195,568	-		DZA65_RS05805	0.86	-1.8
1,195,605	+		DZA65_RS05805	0.89	-0.3
1,195,605	+		DZA65_RS05805	0.89	-0.2
1,195,605	+		DZA65_RS05805	0.89	-1.7
1,195,606	-		DZA65_RS05805	0.89	+0.0
1,195,606	-		DZA65_RS05805	0.89	-0.1
1,195,608	+		DZA65_RS05805	0.89	-0.0
1,195,608	+		DZA65_RS05805	0.89	-1.2
1,195,608	+		DZA65_RS05805	0.89	-0.3
1,195,608	+		DZA65_RS05805	0.89	-0.1
1,195,609	-		DZA65_RS05805	0.89	-2.9
1,195,609	-		DZA65_RS05805	0.89	-1.1
1,195,609	-		DZA65_RS05805	0.89	+0.4
1,195,693	+				+0.1
1,195,693	+				-1.6
1,195,694	-				-0.1
1,195,694	-				-1.4
1,195,694	-				+0.3
1,195,730	+				-1.2
1,195,730	+				-0.8
1,195,731	-				+0.0
1,195,731	-				-1.4
1,195,731	-				-0.2
1,195,733	+				-0.6
1,195,784	+				-0.9
1,195,784	+				-0.9
1,195,784	+				-0.3
1,195,784	+				+0.4
1,195,784	+				-0.4
1,195,784	+				-0.8
1,195,784	+				+0.4
1,195,784	+				+2.4
1,195,784	+				-1.4
1,195,784	+				-1.4
1,195,785	-				+2.0
1,195,785	-				-2.2
1,195,785	-				-0.4
1,195,785	-				+2.0
1,195,785	-				-0.6
1,195,785	-				-0.7
1,195,785	-				+0.6
1,195,806	+				-1.7
1,195,806	+				-0.9
1,195,806	+				-0.4
1,195,807	-				-0.6
1,195,832	+				-2.2
1,195,832	+				-0.2
1,195,832	+				-0.2
1,195,832	+				-1.6
1,195,832	+				+0.6
1,195,832	+				+0.8
1,195,832	+				+1.8
1,195,832	+				+0.1
1,195,832	+				-0.3
1,195,833	-				-0.6
1,195,833	-				-0.0
1,195,833	-				-0.5
1,195,833	-				+0.4
1,195,833	-				-1.0
1,195,833	-				-0.0
1,195,833	-				+0.2
1,195,874	-				-0.9
1,195,874	-				+2.0
1,195,874	-				+0.4
1,195,886	+				-0.7
1,195,901	-				+0.8
1,195,901	-				-1.3
1,195,903	+				+0.3
1,195,903	+				-0.6
1,195,903	+				+0.3
1,195,903	+				+1.6
1,195,903	+				-0.6
1,195,903	+				-0.3
1,195,903	+				+1.4
1,195,903	+				-0.6
1,195,903	+				-0.5
1,195,903	+				-1.0
1,195,904	-				-0.6
1,195,904	-				+0.5
1,195,904	-				-0.0
1,195,904	-				+1.6
1,195,904	-				+0.3
1,195,904	-				+1.9
1,195,904	-				-0.0
1,195,904	-				+0.8
1,195,904	-				+1.0
1,195,904	-				-0.6
1,195,904	-				-2.4
1,195,904	-				+0.2
1,195,904	-				+1.3
1,195,909	+				+0.8
1,195,909	+				-0.6
1,195,909	+				-1.2
1,195,910	-				+2.2
1,196,069	-				-1.5
1,196,079	+				-1.8
1,196,079	+				+1.3
1,196,092	+				+0.5
1,196,093	-				-0.6
1,196,093	-				-1.3
1,196,093	-				+0.4
1,196,093	-				-1.4
1,196,093	-				-0.1
1,196,093	-				-0.2
1,196,093	-				+0.7
1,196,149	+				+0.2
1,196,149	+				-0.6
1,196,149	+				-1.1
1,196,149	+				-0.8
1,196,150	-				+0.9
1,196,150	-				-0.2
1,196,150	-				+0.8
1,196,150	-				+0.2
1,196,150	-				-0.4
1,196,240	+		DZA65_RS05810	0.15	-0.7
1,196,273	+				-0.2
1,196,365	+		DZA65_RS05810	0.33	+0.9
1,196,366	-		DZA65_RS05810	0.33	-1.2
1,196,441	+		DZA65_RS05810	0.44	+0.5
1,196,441	+		DZA65_RS05810	0.44	+2.0
1,196,441	+		DZA65_RS05810	0.44	+0.1
1,196,441	+		DZA65_RS05810	0.44	+0.3
1,196,441	+		DZA65_RS05810	0.44	+0.4
1,196,441	+		DZA65_RS05810	0.44	-0.9
1,196,442	-		DZA65_RS05810	0.44	-0.3
1,196,442	-		DZA65_RS05810	0.44	+0.7
1,196,442	-		DZA65_RS05810	0.44	+0.8
1,196,442	-		DZA65_RS05810	0.44	+1.8
1,196,442	-		DZA65_RS05810	0.44	+0.2
1,196,442	-		DZA65_RS05810	0.44	+0.4
1,196,442	-		DZA65_RS05810	0.44	-1.9
1,196,442	-		DZA65_RS05810	0.44	+0.7
1,196,442	-		DZA65_RS05810	0.44	-1.6
1,196,442	-		DZA65_RS05810	0.44	+0.3
1,196,442	-		DZA65_RS05810	0.44	+1.1
1,196,635	+		DZA65_RS05810	0.72	-1.2
1,196,655	+		DZA65_RS05810	0.75	-1.6
1,196,655	+		DZA65_RS05810	0.75	+0.4
1,196,655	+		DZA65_RS05810	0.75	-1.3
1,196,655	+		DZA65_RS05810	0.75	-0.2
1,196,655	+		DZA65_RS05810	0.75	+0.0
1,196,655	+		DZA65_RS05810	0.75	-0.6
1,196,655	+		DZA65_RS05810	0.75	+0.3
1,196,656	-		DZA65_RS05810	0.75	+1.3
1,196,656	-		DZA65_RS05810	0.75	+0.2
1,196,656	-		DZA65_RS05810	0.75	+0.8
1,196,656	-		DZA65_RS05810	0.75	+1.3
1,196,657	+		DZA65_RS05810	0.75	-0.8
1,196,657	+				-1.6
1,196,657	+		DZA65_RS05810	0.75	+0.2
1,196,657	+		DZA65_RS05810	0.75	-0.4
1,196,657	+		DZA65_RS05810	0.75	+1.0
1,196,657	+		DZA65_RS05810	0.75	+0.1
1,196,657	+		DZA65_RS05810	0.75	-1.6
1,196,657	+		DZA65_RS05810	0.75	-0.2
1,196,657	+		DZA65_RS05810	0.75	+0.0
1,196,657	+		DZA65_RS05810	0.75	-0.5
1,196,657	+		DZA65_RS05810	0.75	+0.1
1,196,657	+		DZA65_RS05810	0.75	-0.2
1,196,657	+		DZA65_RS05810	0.75	+0.8
1,196,657	+		DZA65_RS05810	0.75	-0.9
1,196,657	+		DZA65_RS05810	0.75	+0.1
1,196,657	+		DZA65_RS05810	0.75	-0.1
1,196,657	+		DZA65_RS05810	0.75	+1.4
1,196,658	-		DZA65_RS05810	0.75	+0.7
1,196,658	-		DZA65_RS05810	0.75	+2.7
1,196,658	-		DZA65_RS05810	0.75	-0.9
1,196,658	-		DZA65_RS05810	0.75	-0.6
1,196,658	-		DZA65_RS05810	0.75	-2.2
1,196,658	-		DZA65_RS05810	0.75	+1.0
1,196,658	-		DZA65_RS05810	0.75	+1.2
1,196,658	-		DZA65_RS05810	0.75	+1.2
1,196,658	-		DZA65_RS05810	0.75	-1.4
1,196,658	-				-0.6
1,196,658	-		DZA65_RS05810	0.75	-0.2
1,196,658	-		DZA65_RS05810	0.75	+1.3
1,196,658	-		DZA65_RS05810	0.75	-0.3
1,196,658	-		DZA65_RS05810	0.75	-0.6
1,196,658	-		DZA65_RS05810	0.75	+0.2
1,196,659	+		DZA65_RS05810	0.76	+0.7
1,196,659	+		DZA65_RS05810	0.76	+0.4
1,196,659	+				+1.4
1,196,659	+		DZA65_RS05810	0.76	+0.7
1,196,659	+		DZA65_RS05810	0.76	-0.1
1,196,659	+		DZA65_RS05810	0.76	-0.9
1,196,659	+		DZA65_RS05810	0.76	-1.4
1,196,660	-		DZA65_RS05810	0.76	-1.6
1,196,660	-		DZA65_RS05810	0.76	-1.4
1,196,660	-		DZA65_RS05810	0.76	-1.7
1,196,660	-		DZA65_RS05810	0.76	-0.3
1,196,660	-		DZA65_RS05810	0.76	+0.2
1,196,660	-		DZA65_RS05810	0.76	+0.3
1,196,660	-		DZA65_RS05810	0.76	-1.4
1,196,660	-		DZA65_RS05810	0.76	-2.2
1,196,660	-		DZA65_RS05810	0.76	-0.2
1,196,660	-		DZA65_RS05810	0.76	-0.4
1,196,660	-		DZA65_RS05810	0.76	+1.4
1,196,660	-		DZA65_RS05810	0.76	-0.6
1,196,660	-		DZA65_RS05810	0.76	-2.6
1,196,685	+		DZA65_RS05810	0.79	-0.2
1,196,685	+		DZA65_RS05810	0.79	-2.2
1,196,685	+		DZA65_RS05810	0.79	+0.0
1,196,685	+		DZA65_RS05810	0.79	-0.7
1,196,695	+		DZA65_RS05810	0.81	-0.2
1,196,696	-		DZA65_RS05810	0.81	-0.2
1,196,702	+		DZA65_RS05810	0.82	-0.3
1,196,702	+		DZA65_RS05810	0.82	+0.4
1,196,702	+		DZA65_RS05810	0.82	-0.6
1,196,702	+		DZA65_RS05810	0.82	+0.8
1,196,703	-		DZA65_RS05810	0.82	-0.6
1,196,703	-		DZA65_RS05810	0.82	-1.6
1,196,703	-		DZA65_RS05810	0.82	-0.0
1,196,703	-		DZA65_RS05810	0.82	-0.5
1,196,703	-		DZA65_RS05810	0.82	-2.2
1,196,703	-		DZA65_RS05810	0.82	-1.6