Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05755

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Upstate
				remove
1,180,164	-	DZA65_RS05745	0.88	+1.4
1,180,202	+			+2.4
1,180,366	+	DZA65_RS05750	0.12	+1.0
1,180,366	+	DZA65_RS05750	0.12	-0.7
1,180,367	-	DZA65_RS05750	0.12	+0.7
1,180,367	-	DZA65_RS05750	0.12	-0.3
1,180,367	-	DZA65_RS05750	0.12	-0.1
1,180,485	-	DZA65_RS05750	0.30	-0.5
1,180,485	-	DZA65_RS05750	0.30	+0.0
1,180,495	+	DZA65_RS05750	0.31	-1.0
1,180,568	+	DZA65_RS05750	0.42	-3.5
1,180,622	+	DZA65_RS05750	0.51	-0.6
1,180,622	+	DZA65_RS05750	0.51	+0.8
1,180,622	+	DZA65_RS05750	0.51	-0.1
1,180,622	+	DZA65_RS05750	0.51	-0.6
1,180,623	-	DZA65_RS05750	0.51	+1.4
1,180,623	-	DZA65_RS05750	0.51	+0.1
1,180,623	-	DZA65_RS05750	0.51	-0.9
1,180,623	-	DZA65_RS05750	0.51	-1.0
1,180,623	-	DZA65_RS05750	0.51	+0.1
1,180,626	+	DZA65_RS05750	0.51	-2.6
1,180,626	+	DZA65_RS05750	0.51	-1.0
1,180,626	+	DZA65_RS05750	0.51	-0.8
1,180,627	-	DZA65_RS05750	0.51	+0.7
1,180,774	+			-0.2
1,180,774	+	DZA65_RS05750	0.74	+0.3
1,180,774	+	DZA65_RS05750	0.74	-1.6
1,180,774	+	DZA65_RS05750	0.74	+0.8
1,180,774	+	DZA65_RS05750	0.74	+0.2
1,180,775	-	DZA65_RS05750	0.74	-0.3
1,180,775	-	DZA65_RS05750	0.74	-0.8
1,180,775	-	DZA65_RS05750	0.74	-0.8
1,180,775	-	DZA65_RS05750	0.74	-0.3
1,180,775	-	DZA65_RS05750	0.74	+1.1
1,180,780	+	DZA65_RS05750	0.75	-0.4
1,180,780	+	DZA65_RS05750	0.75	-0.5
1,180,780	+	DZA65_RS05750	0.75	+0.9
1,180,780	+	DZA65_RS05750	0.75	-0.6
1,180,780	+	DZA65_RS05750	0.75	-0.9
1,180,780	+	DZA65_RS05750	0.75	-0.8
1,180,780	+	DZA65_RS05750	0.75	+0.1
1,180,780	+	DZA65_RS05750	0.75	+1.8
1,180,780	+	DZA65_RS05750	0.75	-0.6
1,180,780	+	DZA65_RS05750	0.75	+1.2
1,180,781	-	DZA65_RS05750	0.75	-3.2
1,180,781	-	DZA65_RS05750	0.75	-0.0
1,180,781	-	DZA65_RS05750	0.75	-0.4
1,180,781	-	DZA65_RS05750	0.75	-2.2
1,180,781	-	DZA65_RS05750	0.75	+0.4
1,180,781	-	DZA65_RS05750	0.75	+0.8
1,180,781	-	DZA65_RS05750	0.75	-0.6
1,180,781	-	DZA65_RS05750	0.75	-0.4
1,180,781	-	DZA65_RS05750	0.75	-0.3
1,180,781	-	DZA65_RS05750	0.75	-2.9
1,180,781	-	DZA65_RS05750	0.75	+2.0
1,180,781	-	DZA65_RS05750	0.75	+0.4
1,180,807	+	DZA65_RS05750	0.79	+0.1
1,180,807	+	DZA65_RS05750	0.79	+0.3
1,180,807	+	DZA65_RS05750	0.79	+1.5
1,180,807	+	DZA65_RS05750	0.79	+0.0
1,180,808	-	DZA65_RS05750	0.79	-2.7
1,180,808	-	DZA65_RS05750	0.79	+0.9
1,180,808	-	DZA65_RS05750	0.79	+0.4
1,180,808	-	DZA65_RS05750	0.79	-0.4
1,180,810	+	DZA65_RS05750	0.79	-0.3
1,180,810	+	DZA65_RS05750	0.79	+0.8
1,180,810	+	DZA65_RS05750	0.79	-0.7
1,180,811	-	DZA65_RS05750	0.79	-2.2
1,180,811	-	DZA65_RS05750	0.79	-0.6
1,180,811	-	DZA65_RS05750	0.79	+0.3
1,180,811	-	DZA65_RS05750	0.79	+0.0
1,180,811	-	DZA65_RS05750	0.79	-1.6
1,180,811	-	DZA65_RS05750	0.79	+2.0
1,180,811	-	DZA65_RS05750	0.79	+1.0
1,180,811	-	DZA65_RS05750	0.79	-1.9
1,180,839	+	DZA65_RS05750	0.84	-2.6
1,180,839	+	DZA65_RS05750	0.84	+0.4
1,180,938	+			-1.9
1,180,939	-			-0.3
1,181,013	+			-0.9
1,181,013	+			-0.5
1,181,013	+			-0.6
1,181,014	-			+0.4
1,181,014	-			-0.3
1,181,014	-			-1.3
1,181,014	-			-1.6
1,181,051	+			+0.3
1,181,051	+			-0.2
1,181,051	+			-0.2
1,181,051	+			+0.2
1,181,051	+			+2.0
1,181,052	-			+1.1
1,181,052	-			+0.0
1,181,052	-			+2.9
1,181,052	-			+1.2
1,181,168	+			-0.2
1,181,168	+			+1.7
1,181,169	-			-0.1
1,181,169	-			+0.3
1,181,204	+	DZA65_RS05755	0.11	-1.1
1,181,269	+	DZA65_RS05755	0.16	-0.7
1,181,269	+	DZA65_RS05755	0.16	+0.4
1,181,270	-	DZA65_RS05755	0.16	+0.1
1,181,270	-	DZA65_RS05755	0.16	-0.3
1,181,270	-	DZA65_RS05755	0.16	-0.3
1,181,291	+	DZA65_RS05755	0.18	+0.4
1,181,291	+	DZA65_RS05755	0.18	-0.6
1,181,292	-	DZA65_RS05755	0.18	+0.5
1,181,292	-	DZA65_RS05755	0.18	+0.0
1,181,292	-	DZA65_RS05755	0.18	-0.4
1,181,292	-	DZA65_RS05755	0.18	-3.0
1,181,523	+	DZA65_RS05755	0.37	-1.6
1,181,524	-	DZA65_RS05755	0.37	-0.2
1,181,524	-	DZA65_RS05755	0.37	-1.9
1,181,525	+	DZA65_RS05755	0.37	-1.4
1,181,570	+	DZA65_RS05755	0.41	-2.4
1,181,570	+	DZA65_RS05755	0.41	-0.1
1,181,570	+	DZA65_RS05755	0.41	-0.2
1,181,570	+	DZA65_RS05755	0.41	-0.5
1,181,570	+	DZA65_RS05755	0.41	+0.4
1,181,571	-	DZA65_RS05755	0.41	-1.8
1,181,571	-	DZA65_RS05755	0.41	-0.7
1,181,571	-	DZA65_RS05755	0.41	-0.4
1,181,571	-	DZA65_RS05755	0.41	-1.4
1,181,571	-	DZA65_RS05755	0.41	-0.2
1,181,571	-	DZA65_RS05755	0.41	-1.9
1,181,573	+	DZA65_RS05755	0.41	+0.9
1,181,573	+	DZA65_RS05755	0.41	-0.7
1,181,573	+	DZA65_RS05755	0.41	-1.6
1,181,573	+	DZA65_RS05755	0.41	+0.4
1,181,573	+	DZA65_RS05755	0.41	-0.7
1,181,573	+	DZA65_RS05755	0.41	-0.6
1,181,574	-	DZA65_RS05755	0.41	-0.1
1,181,574	-	DZA65_RS05755	0.41	+0.2
1,181,607	-	DZA65_RS05755	0.44	-1.6
1,181,762	+	DZA65_RS05755	0.57	+0.4
1,181,762	+	DZA65_RS05755	0.57	-0.6
1,181,763	-	DZA65_RS05755	0.57	+0.9
1,181,804	+	DZA65_RS05755	0.61	-0.3
1,181,804	+	DZA65_RS05755	0.61	-0.3
1,181,804	+	DZA65_RS05755	0.61	-0.1
1,181,804	+	DZA65_RS05755	0.61	-1.6
1,181,805	-	DZA65_RS05755	0.61	+0.4
1,181,805	-	DZA65_RS05755	0.61	+0.7
1,181,805	-	DZA65_RS05755	0.61	-1.3
1,181,805	-	DZA65_RS05755	0.61	-1.0
1,181,886	+	DZA65_RS05755	0.67	+1.9
1,181,886	+	DZA65_RS05755	0.67	+1.4
1,181,887	-	DZA65_RS05755	0.68	+0.8
1,181,887	-	DZA65_RS05755	0.68	-0.1
1,181,887	-	DZA65_RS05755	0.68	-1.6
1,181,917	+	DZA65_RS05755	0.70	+0.7
1,181,918	-	DZA65_RS05755	0.70	+0.8
1,181,936	+	DZA65_RS05755	0.72	+0.4
1,181,936	+	DZA65_RS05755	0.72	+0.3
1,181,937	-	DZA65_RS05755	0.72	+1.4
1,181,937	-	DZA65_RS05755	0.72	-0.3
1,181,937	-	DZA65_RS05755	0.72	-1.7
1,182,001	+	DZA65_RS05755	0.77	-2.0
1,182,001	+	DZA65_RS05755	0.77	-0.2
1,182,001	+	DZA65_RS05755	0.77	-0.1
1,182,001	+	DZA65_RS05755	0.77	-0.2
1,182,001	+	DZA65_RS05755	0.77	+0.1
1,182,002	-	DZA65_RS05755	0.77	-1.9
1,182,002	-	DZA65_RS05755	0.77	+0.1
1,182,002	-	DZA65_RS05755	0.77	-0.6
1,182,002	-	DZA65_RS05755	0.77	+0.1
1,182,002	-	DZA65_RS05755	0.77	+0.1
1,182,002	-	DZA65_RS05755	0.77	-0.5
1,182,054	+	DZA65_RS05755	0.81	-1.0
1,182,055	-	DZA65_RS05755	0.81	-0.8
1,182,055	-	DZA65_RS05755	0.81	+0.2
1,182,110	-	DZA65_RS05755	0.86	+0.3
1,182,135	-	DZA65_RS05755	0.88	-0.4
1,182,233	-			+0.6
1,182,270	-			-0.4
1,182,276	+			+0.8
1,182,277	-			+0.2
1,182,277	-			+1.2
1,182,311	+			-0.7
1,182,311	+			-0.3
1,182,312	-			+1.2
1,182,319	+			-0.4
1,182,419	+			+0.4
1,182,419	+			-0.1
1,182,419	+			+2.0
1,182,420	-			-0.6
1,182,422	+			+1.0
1,182,422	+			-0.4
1,182,422	+			-0.8
1,182,433	-			+0.3
1,182,475	+			+0.7
1,182,475	+			+0.4
1,182,475	+			-0.8
1,182,475	+			-1.9
1,182,475	+			+0.4
1,182,475	+			+0.8
1,182,476	-			-1.4
1,182,476	-			+1.1
1,182,476	-			-0.2
1,182,476	-			-1.7
1,182,476	-			-0.8
1,182,480	+			+1.8
1,182,481	-			-1.0
1,182,517	+			+0.2
1,182,545	-			+0.3
1,182,668	+			-1.3
1,182,668	+			-0.2
1,182,669	-			+1.0
1,182,669	-			+0.3
1,182,684	+			+0.4
1,182,684	+			-0.0
1,182,684	+			-0.4
1,182,685	-			-1.2
1,182,685	-			+0.8
1,182,687	-			-0.4
1,182,728	+			-0.0
1,182,931	+	DZA65_RS05760	0.20	-0.2
1,182,931	+	DZA65_RS05760	0.20	+0.4
1,183,065	-	DZA65_RS05760	0.33	-1.4
1,183,145	+	DZA65_RS05760	0.40	+0.1
1,183,145	+	DZA65_RS05760	0.40	+1.0
1,183,145	+	DZA65_RS05760	0.40	-0.2
1,183,145	+	DZA65_RS05760	0.40	+0.7
1,183,145	+	DZA65_RS05760	0.40	-0.3
1,183,146	-	DZA65_RS05760	0.40	+0.4
1,183,146	-	DZA65_RS05760	0.40	+0.6
1,183,146	-	DZA65_RS05760	0.40	-0.0
1,183,146	-	DZA65_RS05760	0.40	+0.1
1,183,146	-	DZA65_RS05760	0.40	+0.2
1,183,146	-	DZA65_RS05760	0.40	+1.0
1,183,146	-	DZA65_RS05760	0.40	+0.1
1,183,146	-	DZA65_RS05760	0.40	+0.2
1,183,146	-	DZA65_RS05760	0.40	+0.4
1,183,173	-	DZA65_RS05760	0.42	+1.0
1,183,212	+	DZA65_RS05760	0.46	+1.3
1,183,214	+	DZA65_RS05760	0.46	-0.3
1,183,215	-	DZA65_RS05760	0.46	-0.1

Or see this region's nucleotide sequence