Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05750

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05745 and DZA65_RS05750 are separated by 12 nucleotidesDZA65_RS05750 and DZA65_RS05755 are separated by 130 nucleotides DZA65_RS05745: DZA65_RS05745 - LysR family transcriptional regulator, at 1,179,336 to 1,180,277 _RS05745 DZA65_RS05750: DZA65_RS05750 - HAD family hydrolase, at 1,180,290 to 1,180,946 _RS05750 DZA65_RS05755: DZA65_RS05755 - alpha/beta fold hydrolase, at 1,181,077 to 1,182,276 _RS05755 Position (kb) 1180 1181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1179.296 kb on + strandat 1179.341 kb on + strandat 1179.342 kb on - strandat 1179.342 kb on - strandat 1179.357 kb on + strandat 1179.357 kb on + strandat 1179.377 kb on + strandat 1179.428 kb on + strandat 1179.431 kb on + strand, within DZA65_RS05745at 1179.431 kb on + strand, within DZA65_RS05745at 1179.724 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.074 kb on + strand, within DZA65_RS05745at 1180.164 kb on - strand, within DZA65_RS05745at 1180.202 kb on + strandat 1180.366 kb on + strand, within DZA65_RS05750at 1180.366 kb on + strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.485 kb on - strand, within DZA65_RS05750at 1180.485 kb on - strand, within DZA65_RS05750at 1180.495 kb on + strand, within DZA65_RS05750at 1180.568 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.627 kb on - strand, within DZA65_RS05750at 1180.774 kb on + strandat 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.839 kb on + strand, within DZA65_RS05750at 1180.839 kb on + strand, within DZA65_RS05750at 1180.938 kb on + strandat 1180.939 kb on - strandat 1181.013 kb on + strandat 1181.013 kb on + strandat 1181.013 kb on + strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.168 kb on + strandat 1181.168 kb on + strandat 1181.169 kb on - strandat 1181.169 kb on - strandat 1181.204 kb on + strand, within DZA65_RS05755at 1181.269 kb on + strand, within DZA65_RS05755at 1181.269 kb on + strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755at 1181.291 kb on + strand, within DZA65_RS05755at 1181.291 kb on + strand, within DZA65_RS05755at 1181.292 kb on - strand, within DZA65_RS05755at 1181.292 kb on - strand, within DZA65_RS05755at 1181.292 kb on - strand, within DZA65_RS05755at 1181.292 kb on - strand, within DZA65_RS05755at 1181.523 kb on + strand, within DZA65_RS05755at 1181.524 kb on - strand, within DZA65_RS05755at 1181.524 kb on - strand, within DZA65_RS05755at 1181.525 kb on + strand, within DZA65_RS05755at 1181.570 kb on + strand, within DZA65_RS05755at 1181.570 kb on + strand, within DZA65_RS05755at 1181.570 kb on + strand, within DZA65_RS05755at 1181.570 kb on + strand, within DZA65_RS05755at 1181.570 kb on + strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.571 kb on - strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.573 kb on + strand, within DZA65_RS05755at 1181.574 kb on - strand, within DZA65_RS05755at 1181.574 kb on - strand, within DZA65_RS05755at 1181.607 kb on - strand, within DZA65_RS05755at 1181.762 kb on + strand, within DZA65_RS05755at 1181.762 kb on + strand, within DZA65_RS05755at 1181.763 kb on - strand, within DZA65_RS05755at 1181.804 kb on + strand, within DZA65_RS05755at 1181.804 kb on + strand, within DZA65_RS05755at 1181.804 kb on + strand, within DZA65_RS05755at 1181.804 kb on + strand, within DZA65_RS05755at 1181.805 kb on - strand, within DZA65_RS05755at 1181.805 kb on - strand, within DZA65_RS05755at 1181.805 kb on - strand, within DZA65_RS05755at 1181.805 kb on - strand, within DZA65_RS05755at 1181.886 kb on + strand, within DZA65_RS05755at 1181.886 kb on + strand, within DZA65_RS05755at 1181.887 kb on - strand, within DZA65_RS05755at 1181.887 kb on - strand, within DZA65_RS05755at 1181.887 kb on - strand, within DZA65_RS05755at 1181.917 kb on + strand, within DZA65_RS05755at 1181.918 kb on - strand, within DZA65_RS05755at 1181.936 kb on + strand, within DZA65_RS05755at 1181.936 kb on + strand, within DZA65_RS05755at 1181.937 kb on - strand, within DZA65_RS05755at 1181.937 kb on - strand, within DZA65_RS05755at 1181.937 kb on - strand, within DZA65_RS05755

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,179,296 + +0.1
1,179,341 + +0.0
1,179,342 - -1.1
1,179,342 - +0.4
1,179,357 + +0.1
1,179,357 + -0.4
1,179,377 + +0.4
1,179,428 + +1.2
1,179,431 + DZA65_RS05745 0.10 -0.2
1,179,431 + DZA65_RS05745 0.10 +0.7
1,179,724 + DZA65_RS05745 0.41 -1.2
1,180,014 + DZA65_RS05745 0.72 -0.1
1,180,014 + DZA65_RS05745 0.72 -0.2
1,180,014 + DZA65_RS05745 0.72 -1.6
1,180,015 - DZA65_RS05745 0.72 -1.0
1,180,015 - DZA65_RS05745 0.72 -0.2
1,180,017 + DZA65_RS05745 0.72 +0.3
1,180,017 + DZA65_RS05745 0.72 -1.8
1,180,018 - DZA65_RS05745 0.72 -0.7
1,180,018 - DZA65_RS05745 0.72 +0.2
1,180,018 - DZA65_RS05745 0.72 -0.9
1,180,018 - DZA65_RS05745 0.72 +0.4
1,180,018 - DZA65_RS05745 0.72 +0.8
1,180,074 + DZA65_RS05745 0.78 +0.0
1,180,164 - DZA65_RS05745 0.88 +1.4
1,180,202 + +2.4
1,180,366 + DZA65_RS05750 0.12 +1.0
1,180,366 + DZA65_RS05750 0.12 -0.7
1,180,367 - DZA65_RS05750 0.12 +0.7
1,180,367 - DZA65_RS05750 0.12 -0.3
1,180,367 - DZA65_RS05750 0.12 -0.1
1,180,485 - DZA65_RS05750 0.30 -0.5
1,180,485 - DZA65_RS05750 0.30 +0.0
1,180,495 + DZA65_RS05750 0.31 -1.0
1,180,568 + DZA65_RS05750 0.42 -3.5
1,180,622 + DZA65_RS05750 0.51 -0.6
1,180,622 + DZA65_RS05750 0.51 +0.8
1,180,622 + DZA65_RS05750 0.51 -0.1
1,180,622 + DZA65_RS05750 0.51 -0.6
1,180,623 - DZA65_RS05750 0.51 +1.4
1,180,623 - DZA65_RS05750 0.51 +0.1
1,180,623 - DZA65_RS05750 0.51 -0.9
1,180,623 - DZA65_RS05750 0.51 -1.0
1,180,623 - DZA65_RS05750 0.51 +0.1
1,180,626 + DZA65_RS05750 0.51 -2.6
1,180,626 + DZA65_RS05750 0.51 -1.0
1,180,626 + DZA65_RS05750 0.51 -0.8
1,180,627 - DZA65_RS05750 0.51 +0.7
1,180,774 + -0.2
1,180,774 + DZA65_RS05750 0.74 +0.3
1,180,774 + DZA65_RS05750 0.74 -1.6
1,180,774 + DZA65_RS05750 0.74 +0.8
1,180,774 + DZA65_RS05750 0.74 +0.2
1,180,775 - DZA65_RS05750 0.74 -0.3
1,180,775 - DZA65_RS05750 0.74 -0.8
1,180,775 - DZA65_RS05750 0.74 -0.8
1,180,775 - DZA65_RS05750 0.74 -0.3
1,180,775 - DZA65_RS05750 0.74 +1.1
1,180,780 + DZA65_RS05750 0.75 -0.4
1,180,780 + DZA65_RS05750 0.75 -0.5
1,180,780 + DZA65_RS05750 0.75 +0.9
1,180,780 + DZA65_RS05750 0.75 -0.6
1,180,780 + DZA65_RS05750 0.75 -0.9
1,180,780 + DZA65_RS05750 0.75 -0.8
1,180,780 + DZA65_RS05750 0.75 +0.1
1,180,780 + DZA65_RS05750 0.75 +1.8
1,180,780 + DZA65_RS05750 0.75 -0.6
1,180,780 + DZA65_RS05750 0.75 +1.2
1,180,781 - DZA65_RS05750 0.75 -3.2
1,180,781 - DZA65_RS05750 0.75 -0.0
1,180,781 - DZA65_RS05750 0.75 -0.4
1,180,781 - DZA65_RS05750 0.75 -2.2
1,180,781 - DZA65_RS05750 0.75 +0.4
1,180,781 - DZA65_RS05750 0.75 +0.8
1,180,781 - DZA65_RS05750 0.75 -0.6
1,180,781 - DZA65_RS05750 0.75 -0.4
1,180,781 - DZA65_RS05750 0.75 -0.3
1,180,781 - DZA65_RS05750 0.75 -2.9
1,180,781 - DZA65_RS05750 0.75 +2.0
1,180,781 - DZA65_RS05750 0.75 +0.4
1,180,807 + DZA65_RS05750 0.79 +0.1
1,180,807 + DZA65_RS05750 0.79 +0.3
1,180,807 + DZA65_RS05750 0.79 +1.5
1,180,807 + DZA65_RS05750 0.79 +0.0
1,180,808 - DZA65_RS05750 0.79 -2.7
1,180,808 - DZA65_RS05750 0.79 +0.9
1,180,808 - DZA65_RS05750 0.79 +0.4
1,180,808 - DZA65_RS05750 0.79 -0.4
1,180,810 + DZA65_RS05750 0.79 -0.3
1,180,810 + DZA65_RS05750 0.79 +0.8
1,180,810 + DZA65_RS05750 0.79 -0.7
1,180,811 - DZA65_RS05750 0.79 -2.2
1,180,811 - DZA65_RS05750 0.79 -0.6
1,180,811 - DZA65_RS05750 0.79 +0.3
1,180,811 - DZA65_RS05750 0.79 +0.0
1,180,811 - DZA65_RS05750 0.79 -1.6
1,180,811 - DZA65_RS05750 0.79 +2.0
1,180,811 - DZA65_RS05750 0.79 +1.0
1,180,811 - DZA65_RS05750 0.79 -1.9
1,180,839 + DZA65_RS05750 0.84 -2.6
1,180,839 + DZA65_RS05750 0.84 +0.4
1,180,938 + -1.9
1,180,939 - -0.3
1,181,013 + -0.9
1,181,013 + -0.5
1,181,013 + -0.6
1,181,014 - +0.4
1,181,014 - -0.3
1,181,014 - -1.3
1,181,014 - -1.6
1,181,051 + +0.3
1,181,051 + -0.2
1,181,051 + -0.2
1,181,051 + +0.2
1,181,051 + +2.0
1,181,052 - +1.1
1,181,052 - +0.0
1,181,052 - +2.9
1,181,052 - +1.2
1,181,168 + -0.2
1,181,168 + +1.7
1,181,169 - -0.1
1,181,169 - +0.3
1,181,204 + DZA65_RS05755 0.11 -1.1
1,181,269 + DZA65_RS05755 0.16 -0.7
1,181,269 + DZA65_RS05755 0.16 +0.4
1,181,270 - DZA65_RS05755 0.16 +0.1
1,181,270 - DZA65_RS05755 0.16 -0.3
1,181,270 - DZA65_RS05755 0.16 -0.3
1,181,291 + DZA65_RS05755 0.18 +0.4
1,181,291 + DZA65_RS05755 0.18 -0.6
1,181,292 - DZA65_RS05755 0.18 +0.5
1,181,292 - DZA65_RS05755 0.18 +0.0
1,181,292 - DZA65_RS05755 0.18 -0.4
1,181,292 - DZA65_RS05755 0.18 -3.0
1,181,523 + DZA65_RS05755 0.37 -1.6
1,181,524 - DZA65_RS05755 0.37 -0.2
1,181,524 - DZA65_RS05755 0.37 -1.9
1,181,525 + DZA65_RS05755 0.37 -1.4
1,181,570 + DZA65_RS05755 0.41 -2.4
1,181,570 + DZA65_RS05755 0.41 -0.1
1,181,570 + DZA65_RS05755 0.41 -0.2
1,181,570 + DZA65_RS05755 0.41 -0.5
1,181,570 + DZA65_RS05755 0.41 +0.4
1,181,571 - DZA65_RS05755 0.41 -1.8
1,181,571 - DZA65_RS05755 0.41 -0.7
1,181,571 - DZA65_RS05755 0.41 -0.4
1,181,571 - DZA65_RS05755 0.41 -1.4
1,181,571 - DZA65_RS05755 0.41 -0.2
1,181,571 - DZA65_RS05755 0.41 -1.9
1,181,573 + DZA65_RS05755 0.41 +0.9
1,181,573 + DZA65_RS05755 0.41 -0.7
1,181,573 + DZA65_RS05755 0.41 -1.6
1,181,573 + DZA65_RS05755 0.41 +0.4
1,181,573 + DZA65_RS05755 0.41 -0.7
1,181,573 + DZA65_RS05755 0.41 -0.6
1,181,574 - DZA65_RS05755 0.41 -0.1
1,181,574 - DZA65_RS05755 0.41 +0.2
1,181,607 - DZA65_RS05755 0.44 -1.6
1,181,762 + DZA65_RS05755 0.57 +0.4
1,181,762 + DZA65_RS05755 0.57 -0.6
1,181,763 - DZA65_RS05755 0.57 +0.9
1,181,804 + DZA65_RS05755 0.61 -0.3
1,181,804 + DZA65_RS05755 0.61 -0.3
1,181,804 + DZA65_RS05755 0.61 -0.1
1,181,804 + DZA65_RS05755 0.61 -1.6
1,181,805 - DZA65_RS05755 0.61 +0.4
1,181,805 - DZA65_RS05755 0.61 +0.7
1,181,805 - DZA65_RS05755 0.61 -1.3
1,181,805 - DZA65_RS05755 0.61 -1.0
1,181,886 + DZA65_RS05755 0.67 +1.9
1,181,886 + DZA65_RS05755 0.67 +1.4
1,181,887 - DZA65_RS05755 0.68 +0.8
1,181,887 - DZA65_RS05755 0.68 -0.1
1,181,887 - DZA65_RS05755 0.68 -1.6
1,181,917 + DZA65_RS05755 0.70 +0.7
1,181,918 - DZA65_RS05755 0.70 +0.8
1,181,936 + DZA65_RS05755 0.72 +0.4
1,181,936 + DZA65_RS05755 0.72 +0.3
1,181,937 - DZA65_RS05755 0.72 +1.4
1,181,937 - DZA65_RS05755 0.72 -0.3
1,181,937 - DZA65_RS05755 0.72 -1.7

Or see this region's nucleotide sequence