Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05675

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,166,937	+				-1.4
1,167,003	-				+0.6
1,167,042	+		DZA65_RS05670	0.13	-0.6
1,167,043	-		DZA65_RS05670	0.13	+0.8
1,167,081	+		DZA65_RS05670	0.17	+0.8
1,167,089	+		DZA65_RS05670	0.18	-1.3
1,167,090	-		DZA65_RS05670	0.18	+0.7
1,167,116	+		DZA65_RS05670	0.21	+0.8
1,167,116	+		DZA65_RS05670	0.21	-1.9
1,167,188	-		DZA65_RS05670	0.28	+1.1
1,167,224	+				+1.4
1,167,225	-		DZA65_RS05670	0.31	-0.1
1,167,225	-		DZA65_RS05670	0.31	+0.6
1,167,270	+		DZA65_RS05670	0.35	+0.5
1,167,270	+		DZA65_RS05670	0.35	-0.7
1,167,271	-		DZA65_RS05670	0.36	+0.4
1,167,286	+		DZA65_RS05670	0.37	-1.5
1,167,286	+		DZA65_RS05670	0.37	+0.4
1,167,286	+		DZA65_RS05670	0.37	-2.5
1,167,287	-		DZA65_RS05670	0.37	-0.4
1,167,287	-		DZA65_RS05670	0.37	+1.3
1,167,287	-		DZA65_RS05670	0.37	-1.3
1,167,290	+		DZA65_RS05670	0.37	+1.2
1,167,290	+		DZA65_RS05670	0.37	-0.3
1,167,290	+		DZA65_RS05670	0.37	+0.9
1,167,290	+		DZA65_RS05670	0.37	-0.4
1,167,291	-		DZA65_RS05670	0.38	-0.4
1,167,335	-		DZA65_RS05670	0.42	-0.0
1,167,355	+		DZA65_RS05670	0.44	-0.8
1,167,387	+		DZA65_RS05670	0.47	+0.8
1,167,387	+		DZA65_RS05670	0.47	-0.7
1,167,387	+		DZA65_RS05670	0.47	-0.2
1,167,391	+		DZA65_RS05670	0.47	+0.4
1,167,392	-		DZA65_RS05670	0.47	-0.4
1,167,392	-		DZA65_RS05670	0.47	+0.1
1,167,392	-		DZA65_RS05670	0.47	-0.0
1,167,392	-		DZA65_RS05670	0.47	+2.3
1,167,392	-		DZA65_RS05670	0.47	-0.6
1,167,392	-		DZA65_RS05670	0.47	+0.6
1,167,392	-		DZA65_RS05670	0.47	+1.2
1,167,392	-		DZA65_RS05670	0.47	-0.1
1,167,392	-		DZA65_RS05670	0.47	-0.0
1,167,392	-		DZA65_RS05670	0.47	+1.2
1,167,405	+		DZA65_RS05670	0.49	+0.9
1,167,405	+		DZA65_RS05670	0.49	+0.0
1,167,405	+		DZA65_RS05670	0.49	-0.7
1,167,406	-		DZA65_RS05670	0.49	-0.8
1,167,406	-		DZA65_RS05670	0.49	-0.2
1,167,406	-		DZA65_RS05670	0.49	+0.4
1,167,406	-		DZA65_RS05670	0.49	+1.2
1,167,523	+		DZA65_RS05670	0.60	+0.3
1,167,523	+		DZA65_RS05670	0.60	+0.0
1,167,523	+		DZA65_RS05670	0.60	+1.0
1,167,523	+		DZA65_RS05670	0.60	+1.1
1,167,523	+		DZA65_RS05670	0.60	+0.8
1,167,523	+		DZA65_RS05670	0.60	-0.2
1,167,523	+		DZA65_RS05670	0.60	+1.2
1,167,523	+		DZA65_RS05670	0.60	-0.9
1,167,524	-		DZA65_RS05670	0.60	+0.9
1,167,524	-		DZA65_RS05670	0.60	-1.3
1,167,524	-				+2.2
1,167,524	-		DZA65_RS05670	0.60	+0.1
1,167,524	-		DZA65_RS05670	0.60	-1.2
1,167,524	-		DZA65_RS05670	0.60	+0.2
1,167,524	-		DZA65_RS05670	0.60	+0.3
1,167,524	-		DZA65_RS05670	0.60	-1.9
1,167,524	-		DZA65_RS05670	0.60	+0.7
1,167,524	-		DZA65_RS05670	0.60	-1.6
1,167,524	-		DZA65_RS05670	0.60	+0.3
1,167,524	-		DZA65_RS05670	0.60	-0.8
1,167,524	-		DZA65_RS05670	0.60	+0.6
1,167,525	+		DZA65_RS05670	0.60	-0.1
1,167,556	+		DZA65_RS05670	0.63	-0.3
1,167,717	+		DZA65_RS05670	0.79	-0.3
1,167,717	+		DZA65_RS05670	0.79	+1.2
1,167,718	-		DZA65_RS05670	0.79	-0.1
1,167,753	-		DZA65_RS05670	0.82	+0.5
1,167,807	+		DZA65_RS05670	0.88	+0.6
1,167,812	-		DZA65_RS05670	0.88	-0.2
1,167,812	-		DZA65_RS05670	0.88	-0.4
1,167,812	-		DZA65_RS05670	0.88	+1.2
1,167,883	+				-0.6
1,167,883	+				+0.4
1,167,883	+				+1.5
1,167,884	-				-0.6
1,167,884	-				+0.4
1,167,884	-				-1.4
1,167,884	-				-0.2
1,167,888	+				-0.0
1,167,888	+				+0.1
1,167,889	-				-0.4
1,167,892	-				-0.6
1,167,931	+				-0.2
1,167,932	-				+0.7
1,167,936	+				-0.2
1,167,936	+				+0.5
1,167,936	+				-0.3
1,167,936	+				-1.3
1,167,936	+				-0.2
1,167,936	+				-1.4
1,167,937	-				+0.8
1,167,937	-				+0.1
1,167,937	-				-1.9
1,167,937	-				-0.8
1,167,937	-				-1.0
1,167,937	-				-0.4
1,167,937	-				-1.8
1,167,937	-				+0.2
1,167,937	-				-0.6
1,167,937	-				+0.1
1,167,944	+				-0.6
1,167,948	+				+1.0
1,167,949	-				-1.2
1,167,949	-				+2.3
1,167,949	-				-0.4
1,167,987	+				+1.4
1,167,988	-				-1.9
1,168,034	+		DZA65_RS05675	0.14	+0.2
1,168,035	-		DZA65_RS05675	0.14	-1.4
1,168,169	-		DZA65_RS05675	0.34	-1.9
1,168,201	+		DZA65_RS05675	0.38	-1.2
1,168,201	+		DZA65_RS05675	0.38	-2.0
1,168,202	-				+2.0
1,168,202	-		DZA65_RS05675	0.39	+0.4
1,168,202	-		DZA65_RS05675	0.39	-0.3
1,168,202	-		DZA65_RS05675	0.39	-0.1
1,168,202	-		DZA65_RS05675	0.39	-1.2
1,168,269	+		DZA65_RS05675	0.48	-0.8
1,168,293	+		DZA65_RS05675	0.52	+0.3
1,168,293	+		DZA65_RS05675	0.52	+1.2
1,168,294	-		DZA65_RS05675	0.52	+0.4
1,168,334	+		DZA65_RS05675	0.58	-0.7
1,168,334	+		DZA65_RS05675	0.58	-0.2
1,168,334	+		DZA65_RS05675	0.58	+0.0
1,168,334	+		DZA65_RS05675	0.58	-0.7
1,168,335	-		DZA65_RS05675	0.58	+0.2
1,168,335	-		DZA65_RS05675	0.58	+0.0
1,168,336	+		DZA65_RS05675	0.58	+0.7
1,168,337	-		DZA65_RS05675	0.58	-0.0
1,168,337	-		DZA65_RS05675	0.58	-1.2
1,168,337	-		DZA65_RS05675	0.58	-0.8
1,168,371	+		DZA65_RS05675	0.63	-0.3
1,168,374	+		DZA65_RS05675	0.64	-0.4
1,168,375	-		DZA65_RS05675	0.64	-0.4
1,168,429	+		DZA65_RS05675	0.72	+0.3
1,168,429	+		DZA65_RS05675	0.72	-0.7
1,168,429	+		DZA65_RS05675	0.72	-0.9
1,168,429	+		DZA65_RS05675	0.72	+0.2
1,168,430	-		DZA65_RS05675	0.72	-0.9
1,168,430	-		DZA65_RS05675	0.72	-2.4
1,168,430	-		DZA65_RS05675	0.72	+0.7
1,168,430	-		DZA65_RS05675	0.72	+1.2
1,168,430	-		DZA65_RS05675	0.72	+0.7
1,168,430	-		DZA65_RS05675	0.72	+0.4
1,168,430	-		DZA65_RS05675	0.72	-1.4
1,168,440	+		DZA65_RS05675	0.73	+0.0
1,168,441	-		DZA65_RS05675	0.73	-0.6
1,168,441	-		DZA65_RS05675	0.73	-0.8
1,168,441	-		DZA65_RS05675	0.73	+0.2
1,168,489	+		DZA65_RS05675	0.80	+0.0
1,168,489	+		DZA65_RS05675	0.80	-0.4
1,168,490	-		DZA65_RS05675	0.80	-0.5
1,168,490	-		DZA65_RS05675	0.80	-1.2
1,168,573	-				-0.6
1,168,681	+				-0.2
1,168,681	+				-0.6
1,168,681	+				-0.9
1,168,682	-				-2.6
1,168,699	+				-0.1
1,168,741	+				+0.5
1,168,744	+				+0.1
1,168,745	-				-0.6
1,168,782	-				-0.7
1,168,807	-				-0.6
1,168,807	-				-0.4
1,168,807	-				-0.2
1,168,810	-				-1.5
1,168,832	+				-0.1
1,168,880	-				+0.8
1,168,922	-				+1.9
1,168,922	-				+0.3
1,168,922	-				+0.4
1,168,955	+				+0.9
1,168,956	-				+0.0
1,168,961	+				-1.9
1,168,962	-				+1.3
1,168,975	+				-0.4
1,168,976	-				-0.6
1,168,982	-				+0.2
1,168,982	-				-0.3
1,168,982	-				+0.0
1,169,016	+				-0.6
1,169,017	-				-0.1
1,169,082	+				-0.9
1,169,170	+		DZA65_RS05680	0.11	+0.2
1,169,170	+		DZA65_RS05680	0.11	-0.3
1,169,170	+		DZA65_RS05680	0.11	+0.0
1,169,179	+		DZA65_RS05680	0.11	+1.0
1,169,179	+		DZA65_RS05680	0.11	+0.6
1,169,262	+		DZA65_RS05680	0.16	-3.4
1,169,262	+		DZA65_RS05680	0.16	-1.2
1,169,262	+		DZA65_RS05680	0.16	-0.7
1,169,263	-		DZA65_RS05680	0.16	+1.1
1,169,264	+		DZA65_RS05680	0.16	-0.3
1,169,264	+		DZA65_RS05680	0.16	-0.2
1,169,264	+		DZA65_RS05680	0.16	-0.6
1,169,264	+		DZA65_RS05680	0.16	-0.8
1,169,264	+		DZA65_RS05680	0.16	-0.5
1,169,264	+		DZA65_RS05680	0.16	+0.6
1,169,265	-		DZA65_RS05680	0.16	+2.3
1,169,311	+		DZA65_RS05680	0.19	+2.4
1,169,312	-		DZA65_RS05680	0.19	+1.2
1,169,312	-		DZA65_RS05680	0.19	-1.9
1,169,318	-		DZA65_RS05680	0.19	+0.1
1,169,318	-		DZA65_RS05680	0.19	-1.2
1,169,351	+		DZA65_RS05680	0.21	-1.2
1,169,351	+		DZA65_RS05680	0.21	-2.5
1,169,352	-		DZA65_RS05680	0.21	+1.6
1,169,352	-		DZA65_RS05680	0.21	+0.3
1,169,353	+		DZA65_RS05680	0.21	+0.4
1,169,353	+		DZA65_RS05680	0.21	+0.2
1,169,353	+		DZA65_RS05680	0.21	-0.4
1,169,354	-		DZA65_RS05680	0.21	-0.6
1,169,354	-		DZA65_RS05680	0.21	-2.0
1,169,365	-		DZA65_RS05680	0.22	+0.6
1,169,387	+		DZA65_RS05680	0.23	+0.8
1,169,387	+		DZA65_RS05680	0.23	+0.0
1,169,387	+		DZA65_RS05680	0.23	-0.9
1,169,387	+		DZA65_RS05680	0.23	+1.2
1,169,387	+		DZA65_RS05680	0.23	-0.2
1,169,387	+		DZA65_RS05680	0.23	+1.1
1,169,387	+				-0.6
1,169,387	+		DZA65_RS05680	0.23	+0.4
1,169,389	+		DZA65_RS05680	0.23	+0.2
1,169,389	+		DZA65_RS05680	0.23	+1.1
1,169,389	+		DZA65_RS05680	0.23	-1.7
1,169,390	-		DZA65_RS05680	0.23	+0.8
1,169,390	-		DZA65_RS05680	0.23	+2.0
1,169,480	+		DZA65_RS05680	0.28	+0.2
1,169,481	-		DZA65_RS05680	0.28	-0.9
1,169,481	-		DZA65_RS05680	0.28	+0.2
1,169,500	+				+1.4
1,169,501	-		DZA65_RS05680	0.29	+0.8
1,169,558	+		DZA65_RS05680	0.33	-1.6
1,169,558	+		DZA65_RS05680	0.33	-2.4
1,169,558	+		DZA65_RS05680	0.33	+0.7
1,169,558	+		DZA65_RS05680	0.33	+2.2
1,169,558	+		DZA65_RS05680	0.33	+0.0
1,169,558	+		DZA65_RS05680	0.33	-0.6
1,169,558	+		DZA65_RS05680	0.33	-1.0
1,169,559	-		DZA65_RS05680	0.33	-1.6
1,169,559	-		DZA65_RS05680	0.33	-1.4
1,169,559	-		DZA65_RS05680	0.33	+0.8
1,169,559	-		DZA65_RS05680	0.33	-0.3
1,169,559	-		DZA65_RS05680	0.33	-0.3
1,169,559	-		DZA65_RS05680	0.33	+0.0
1,169,564	+		DZA65_RS05680	0.33	-0.1
1,169,565	-		DZA65_RS05680	0.33	-0.2
1,169,565	-		DZA65_RS05680	0.33	+0.7
1,169,602	+		DZA65_RS05680	0.35	-1.6
1,169,603	-		DZA65_RS05680	0.35	-0.3
1,169,603	-		DZA65_RS05680	0.35	-0.1
1,169,612	+		DZA65_RS05680	0.36	+1.0
1,169,612	+		DZA65_RS05680	0.36	+0.6
1,169,613	-		DZA65_RS05680	0.36	-1.3