Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05430

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,115,391	+		DZA65_RS05420	0.50	-0.1
1,115,404	+		DZA65_RS05420	0.54	+1.0
1,115,404	+		DZA65_RS05420	0.54	+0.5
1,115,404	+		DZA65_RS05420	0.54	+0.1
1,115,405	-		DZA65_RS05420	0.54	+1.9
1,115,405	-		DZA65_RS05420	0.54	+1.5
1,115,405	-		DZA65_RS05420	0.54	+0.7
1,115,405	-		DZA65_RS05420	0.54	+0.4
1,115,463	-		DZA65_RS05420	0.72	+0.6
1,115,569	+				-1.1
1,115,570	-				-0.9
1,115,570	-				-0.3
1,115,693	+		DZA65_RS05425	0.18	+3.6
1,115,693	+		DZA65_RS05425	0.18	+0.3
1,115,693	+		DZA65_RS05425	0.18	-0.3
1,115,693	+		DZA65_RS05425	0.18	+0.7
1,115,693	+		DZA65_RS05425	0.18	+2.3
1,115,694	-		DZA65_RS05425	0.18	+0.1
1,115,694	-		DZA65_RS05425	0.18	+0.4
1,115,694	-		DZA65_RS05425	0.18	-0.9
1,115,694	-		DZA65_RS05425	0.18	-0.4
1,115,694	-		DZA65_RS05425	0.18	-0.5
1,115,694	-		DZA65_RS05425	0.18	-0.8
1,115,694	-		DZA65_RS05425	0.18	+1.5
1,115,694	-		DZA65_RS05425	0.18	+0.7
1,115,694	-		DZA65_RS05425	0.18	-0.3
1,115,697	+		DZA65_RS05425	0.18	+0.7
1,115,702	+		DZA65_RS05425	0.19	-0.0
1,115,702	+				+1.0
1,115,702	+		DZA65_RS05425	0.19	+0.7
1,115,702	+		DZA65_RS05425	0.19	-0.8
1,115,703	-		DZA65_RS05425	0.19	+1.2
1,115,768	+		DZA65_RS05425	0.27	-0.3
1,115,809	+		DZA65_RS05425	0.32	-0.7
1,115,809	+		DZA65_RS05425	0.32	-1.0
1,115,809	+		DZA65_RS05425	0.32	-1.6
1,115,810	-		DZA65_RS05425	0.33	-0.1
1,115,810	-		DZA65_RS05425	0.33	-0.4
1,115,830	+		DZA65_RS05425	0.35	+0.2
1,115,830	+		DZA65_RS05425	0.35	+0.9
1,115,830	+		DZA65_RS05425	0.35	+1.0
1,115,857	+		DZA65_RS05425	0.39	-0.6
1,115,893	-		DZA65_RS05425	0.43	-0.0
1,115,896	+		DZA65_RS05425	0.44	-0.6
1,115,896	+		DZA65_RS05425	0.44	+0.2
1,115,896	+		DZA65_RS05425	0.44	-0.6
1,115,897	-		DZA65_RS05425	0.44	-1.1
1,115,897	-		DZA65_RS05425	0.44	-0.4
1,115,897	-		DZA65_RS05425	0.44	-0.4
1,115,897	-		DZA65_RS05425	0.44	-0.3
1,115,897	-		DZA65_RS05425	0.44	+1.3
1,116,054	+		DZA65_RS05425	0.64	-0.0
1,116,054	+		DZA65_RS05425	0.64	-1.5
1,116,054	+		DZA65_RS05425	0.64	-0.6
1,116,054	+		DZA65_RS05425	0.64	-0.3
1,116,054	+		DZA65_RS05425	0.64	-0.3
1,116,054	+				-0.6
1,116,055	-		DZA65_RS05425	0.64	-1.0
1,116,055	-		DZA65_RS05425	0.64	+1.9
1,116,055	-		DZA65_RS05425	0.64	+0.2
1,116,055	-		DZA65_RS05425	0.64	+2.3
1,116,242	+		DZA65_RS05425	0.88	+0.7
1,116,242	+		DZA65_RS05425	0.88	+0.7
1,116,242	+		DZA65_RS05425	0.88	+0.4
1,116,243	-		DZA65_RS05425	0.88	+0.0
1,116,243	-		DZA65_RS05425	0.88	+0.8
1,116,243	-		DZA65_RS05425	0.88	-2.9
1,116,243	-		DZA65_RS05425	0.88	-0.6
1,116,243	-		DZA65_RS05425	0.88	+1.3
1,116,243	-		DZA65_RS05425	0.88	-0.1
1,116,243	-		DZA65_RS05425	0.88	-1.1
1,116,337	+				+0.1
1,116,337	+				-1.7
1,116,338	-				+0.1
1,116,338	-				-0.9
1,116,338	-				-0.3
1,116,338	-				-1.9
1,116,392	-				-1.3
1,116,392	-				+0.9
1,116,392	-				-0.0
1,116,455	+		DZA65_RS05430	0.21	-0.3
1,116,456	-		DZA65_RS05430	0.22	+0.7
1,116,480	-		DZA65_RS05430	0.27	+1.4
1,116,480	-		DZA65_RS05430	0.27	+0.9
1,116,496	+		DZA65_RS05430	0.30	+1.4
1,116,496	+		DZA65_RS05430	0.30	-0.6
1,116,496	+		DZA65_RS05430	0.30	+0.9
1,116,497	-		DZA65_RS05430	0.31	-1.1
1,116,558	+		DZA65_RS05430	0.44	-0.2
1,116,558	+		DZA65_RS05430	0.44	+0.4
1,116,559	-		DZA65_RS05430	0.44	+0.5
1,116,571	+		DZA65_RS05430	0.47	-0.6
1,116,571	+		DZA65_RS05430	0.47	-0.3
1,116,571	+		DZA65_RS05430	0.47	+0.7
1,116,572	-		DZA65_RS05430	0.47	-1.7
1,116,572	-		DZA65_RS05430	0.47	+1.3
1,116,572	-		DZA65_RS05430	0.47	-0.6
1,116,611	+		DZA65_RS05430	0.56	+0.2
1,116,611	+		DZA65_RS05430	0.56	-1.1
1,116,612	-		DZA65_RS05430	0.56	+1.4
1,116,612	-		DZA65_RS05430	0.56	-0.1
1,116,612	-		DZA65_RS05430	0.56	+0.1
1,116,646	+		DZA65_RS05430	0.64	-1.1
1,116,646	+		DZA65_RS05430	0.64	-2.7
1,116,647	-		DZA65_RS05430	0.64	+0.4
1,116,652	-		DZA65_RS05430	0.65	-0.6
1,116,804	+				+0.1
1,116,804	+				+1.2
1,116,805	-				-1.1
1,116,805	-				+0.7
1,116,805	-				-0.2
1,116,808	+				+0.7
1,116,808	+				-1.6
1,116,808	+				+0.2
1,116,808	+				-1.4
1,116,808	+				-0.4
1,116,808	+				-0.4
1,116,808	+				+0.1
1,116,809	-				-3.5
1,116,809	-				-0.4
1,116,809	-				+0.4
1,116,809	-				+0.7
1,116,809	-				-0.0
1,116,809	-				-0.6
1,116,809	-				+0.0
1,116,819	+				+1.4
1,116,819	+				+2.8
1,116,819	+				-0.6
1,116,819	+				+0.9
1,116,819	+				-0.1
1,116,819	+				+1.4
1,116,819	+				+1.8
1,116,819	+				+1.3
1,116,819	+				+0.4
1,116,820	-				-0.8
1,116,820	-				-1.1
1,116,820	-				-2.9
1,116,820	-				-0.2
1,116,820	-				+0.7
1,116,820	-				-0.6
1,116,820	-				-0.2
1,116,858	+				+0.4
1,116,858	+				+0.9
1,116,858	+				-0.9
1,116,858	+				-0.3
1,116,858	+				+1.4
1,116,859	-				+0.4
1,116,859	-				+0.2
1,116,859	-				-0.4
1,116,859	-				+0.6
1,116,865	+				-0.6
1,116,895	-				-3.3
1,116,895	-				-1.9
1,117,090	+		DZA65_RS05435	0.40	+0.4
1,117,091	-		DZA65_RS05435	0.40	+0.3
1,117,091	-		DZA65_RS05435	0.40	+0.4
1,117,091	-		DZA65_RS05435	0.40	+0.2
1,117,126	+		DZA65_RS05435	0.49	-0.6
1,117,126	+		DZA65_RS05435	0.49	+0.8
1,117,127	-				+2.4
1,117,127	-		DZA65_RS05435	0.49	+0.3
1,117,175	-		DZA65_RS05435	0.62	-0.1
1,117,193	+		DZA65_RS05435	0.66	+0.3
1,117,194	-		DZA65_RS05435	0.67	-1.0
1,117,238	+		DZA65_RS05435	0.78	-0.6
1,117,266	-		DZA65_RS05435	0.85	+1.4
1,117,266	-		DZA65_RS05435	0.85	-0.4
1,117,267	+		DZA65_RS05435	0.86	+0.4
1,117,267	+		DZA65_RS05435	0.86	+0.4
1,117,268	-		DZA65_RS05435	0.86	-1.6
1,117,277	+		DZA65_RS05435	0.88	-1.4
1,117,278	-		DZA65_RS05435	0.88	+1.4
1,117,318	+				+0.4
1,117,318	+				-0.9
1,117,318	+				+0.6
1,117,322	+				+0.7
1,117,322	+				-0.6
1,117,322	+				-2.6
1,117,322	+				-0.3
1,117,322	+				-1.9
1,117,322	+				-0.8
1,117,322	+				+0.9
1,117,322	+				-0.1
1,117,322	+				+0.3
1,117,322	+				+0.4
1,117,322	+				-2.7
1,117,322	+				-0.9
1,117,322	+				-1.6
1,117,322	+				-0.4
1,117,323	-				+0.6
1,117,323	-				+1.5
1,117,323	-				+2.3
1,117,323	-				-0.8
1,117,323	-				+0.1
1,117,342	+				+1.1
1,117,392	-				-1.1
1,117,431	+				+0.3
1,117,432	-				-2.6
1,117,432	-				+0.0
1,117,458	+				-1.7
1,117,464	+				-0.4
1,117,464	+				+0.2
1,117,464	+				-0.6
1,117,464	+				+0.9
1,117,465	-				-0.4
1,117,465	-				+0.9
1,117,467	+				-1.0
1,117,467	+				+0.9
1,117,467	+				+0.4
1,117,467	+				-0.1
1,117,467	+				+0.4
1,117,467	+				-1.2
1,117,468	-				+1.1
1,117,468	-				-0.1