Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05215

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,070,660	-		DZA65_RS05210	0.35	+0.0
1,070,660	-		DZA65_RS05210	0.35	-2.1
1,070,698	+		DZA65_RS05210	0.37	+0.8
1,070,698	+		DZA65_RS05210	0.37	-0.1
1,070,699	-		DZA65_RS05210	0.37	-0.3
1,070,772	-		DZA65_RS05210	0.42	-0.5
1,070,772	-		DZA65_RS05210	0.42	-0.8
1,070,772	-		DZA65_RS05210	0.42	-0.7
1,070,772	-		DZA65_RS05210	0.42	+0.8
1,070,772	-		DZA65_RS05210	0.42	-0.6
1,070,774	+		DZA65_RS05210	0.42	-1.1
1,070,774	+		DZA65_RS05210	0.42	+1.2
1,070,775	-		DZA65_RS05210	0.42	+0.3
1,070,783	+		DZA65_RS05210	0.43	-1.1
1,070,784	-		DZA65_RS05210	0.43	-0.1
1,070,836	-		DZA65_RS05210	0.47	+0.1
1,070,874	+		DZA65_RS05210	0.49	+0.8
1,070,905	-		DZA65_RS05210	0.51	+1.9
1,070,905	-				+0.5
1,070,905	-		DZA65_RS05210	0.51	-0.2
1,070,905	-		DZA65_RS05210	0.51	-0.4
1,070,907	+		DZA65_RS05210	0.51	-0.2
1,070,907	+		DZA65_RS05210	0.51	+2.6
1,070,907	+		DZA65_RS05210	0.51	-1.1
1,070,907	+		DZA65_RS05210	0.51	+0.5
1,070,908	-		DZA65_RS05210	0.51	-1.0
1,070,908	-		DZA65_RS05210	0.51	+1.8
1,070,910	+		DZA65_RS05210	0.51	+0.2
1,070,910	+		DZA65_RS05210	0.51	-0.4
1,070,910	+		DZA65_RS05210	0.51	+0.0
1,070,910	+		DZA65_RS05210	0.51	+0.3
1,070,910	+		DZA65_RS05210	0.51	+0.9
1,070,910	+		DZA65_RS05210	0.51	+0.9
1,070,911	-		DZA65_RS05210	0.51	+0.6
1,070,911	-		DZA65_RS05210	0.51	-0.5
1,070,911	-		DZA65_RS05210	0.51	+0.8
1,070,911	-		DZA65_RS05210	0.51	-1.1
1,070,911	-		DZA65_RS05210	0.51	+0.2
1,070,911	-		DZA65_RS05210	0.51	-0.1
1,070,911	-		DZA65_RS05210	0.51	+0.0
1,070,911	-		DZA65_RS05210	0.51	+0.5
1,070,911	-		DZA65_RS05210	0.51	+0.8
1,070,911	-		DZA65_RS05210	0.51	+0.5
1,070,912	+		DZA65_RS05210	0.52	-2.5
1,070,912	+		DZA65_RS05210	0.52	+0.8
1,070,912	+		DZA65_RS05210	0.52	+0.3
1,070,913	-		DZA65_RS05210	0.52	-1.4
1,070,913	-		DZA65_RS05210	0.52	+0.0
1,070,951	+		DZA65_RS05210	0.54	-2.0
1,070,951	+		DZA65_RS05210	0.54	-1.3
1,070,952	-		DZA65_RS05210	0.54	+1.3
1,070,952	-		DZA65_RS05210	0.54	-1.4
1,070,952	-		DZA65_RS05210	0.54	+0.9
1,070,964	-		DZA65_RS05210	0.55	+0.6
1,070,964	-		DZA65_RS05210	0.55	-1.9
1,070,964	-		DZA65_RS05210	0.55	+1.5
1,070,996	-		DZA65_RS05210	0.57	+0.2
1,071,001	-		DZA65_RS05210	0.57	+0.1
1,071,075	+		DZA65_RS05210	0.62	-1.0
1,071,075	+		DZA65_RS05210	0.62	+0.3
1,071,075	+		DZA65_RS05210	0.62	+0.9
1,071,075	+		DZA65_RS05210	0.62	-0.4
1,071,076	-		DZA65_RS05210	0.62	+0.3
1,071,076	-		DZA65_RS05210	0.62	-0.5
1,071,129	+		DZA65_RS05210	0.66	-2.7
1,071,150	+		DZA65_RS05210	0.67	+1.2
1,071,150	+		DZA65_RS05210	0.67	+1.2
1,071,150	+		DZA65_RS05210	0.67	+0.8
1,071,188	+		DZA65_RS05210	0.70	+1.8
1,071,189	-		DZA65_RS05210	0.70	+0.7
1,071,222	+		DZA65_RS05210	0.72	+0.0
1,071,274	+		DZA65_RS05210	0.76	-0.5
1,071,284	+		DZA65_RS05210	0.76	-0.3
1,071,285	-		DZA65_RS05210	0.76	-1.5
1,071,324	+		DZA65_RS05210	0.79	-0.1
1,071,351	+		DZA65_RS05210	0.81	+1.0
1,071,352	-		DZA65_RS05210	0.81	+0.2
1,071,411	-		DZA65_RS05210	0.85	-0.5
1,071,411	-		DZA65_RS05210	0.85	-0.6
1,071,435	+		DZA65_RS05210	0.86	+0.0
1,071,435	+		DZA65_RS05210	0.86	+1.0
1,071,436	-		DZA65_RS05210	0.86	-1.5
1,071,436	-		DZA65_RS05210	0.86	+1.0
1,071,503	-				+1.3
1,071,503	-				-1.3
1,071,504	+				-1.9
1,071,504	+				-0.4
1,071,505	-				+0.6
1,071,509	-				-0.5
1,071,513	+				+0.5
1,071,517	+				-0.6
1,071,518	-				-1.5
1,071,563	-				+0.3
1,071,564	+				-0.4
1,071,564	+				-0.5
1,071,652	-				+0.2
1,071,710	-				-0.3
1,071,806	-		DZA65_RS05215	0.16	-0.5
1,071,806	-		DZA65_RS05215	0.16	+0.9
1,071,827	-		DZA65_RS05215	0.18	+1.0
1,071,827	-		DZA65_RS05215	0.18	+0.1
1,071,866	+		DZA65_RS05215	0.22	+0.1
1,071,866	+		DZA65_RS05215	0.22	+2.2
1,071,866	+		DZA65_RS05215	0.22	+1.5
1,071,878	+		DZA65_RS05215	0.23	-1.7
1,071,879	-		DZA65_RS05215	0.24	+0.2
1,071,879	-		DZA65_RS05215	0.24	-1.4
1,071,879	-		DZA65_RS05215	0.24	+1.0
1,071,879	-		DZA65_RS05215	0.24	+0.5
1,071,879	-		DZA65_RS05215	0.24	-0.3
1,071,893	+		DZA65_RS05215	0.25	+1.0
1,071,893	+		DZA65_RS05215	0.25	+0.6
1,071,944	+		DZA65_RS05215	0.30	+0.4
1,071,945	-		DZA65_RS05215	0.30	+0.5
1,071,945	-		DZA65_RS05215	0.30	+0.2
1,071,949	+		DZA65_RS05215	0.31	-0.3
1,071,949	+		DZA65_RS05215	0.31	-0.0
1,071,949	+		DZA65_RS05215	0.31	-1.3
1,071,950	-		DZA65_RS05215	0.31	-0.7
1,071,950	-		DZA65_RS05215	0.31	-0.2
1,071,954	-		DZA65_RS05215	0.31	+0.5
1,072,068	-		DZA65_RS05215	0.43	+0.5
1,072,115	+		DZA65_RS05215	0.48	-1.1
1,072,116	-		DZA65_RS05215	0.48	-1.0
1,072,116	-		DZA65_RS05215	0.48	+0.5
1,072,127	+		DZA65_RS05215	0.49	-0.1
1,072,127	+		DZA65_RS05215	0.49	+2.0
1,072,127	+		DZA65_RS05215	0.49	+1.1
1,072,127	+		DZA65_RS05215	0.49	-0.7
1,072,128	-		DZA65_RS05215	0.50	+1.1
1,072,128	-		DZA65_RS05215	0.50	-0.5
1,072,128	-		DZA65_RS05215	0.50	+0.7
1,072,128	-		DZA65_RS05215	0.50	-1.3
1,072,128	-		DZA65_RS05215	0.50	+0.8
1,072,282	+		DZA65_RS05215	0.66	-0.1
1,072,283	-		DZA65_RS05215	0.66	-0.0
1,072,328	+		DZA65_RS05215	0.70	-0.1
1,072,335	+		DZA65_RS05215	0.71	-1.3
1,072,344	-		DZA65_RS05215	0.72	-0.3
1,072,384	+		DZA65_RS05215	0.76	-1.0
1,072,384	+		DZA65_RS05215	0.76	+0.1
1,072,384	+		DZA65_RS05215	0.76	+0.1
1,072,385	-		DZA65_RS05215	0.76	-0.1
1,072,385	-		DZA65_RS05215	0.76	+0.6
1,072,385	-		DZA65_RS05215	0.76	+1.9
1,072,458	-		DZA65_RS05215	0.84	+1.8
1,072,458	-		DZA65_RS05215	0.84	-0.3
1,072,538	+				+0.9
1,072,551	+				+0.5
1,072,551	+				+1.1
1,072,551	+				+2.9
1,072,552	-				+0.5
1,072,552	-				-0.0
1,072,609	-				-0.4
1,072,616	+				-0.1
1,072,627	+				-0.0
1,072,627	+				-1.9
1,072,640	+				+0.9
1,072,640	+				+0.6
1,072,640	+				-2.4
1,072,640	+				+0.4
1,072,641	-				+0.5
1,072,641	-				-0.3
1,072,641	-				-0.2
1,072,671	+				+2.0
1,072,671	+				-2.5
1,072,671	+				-1.9
1,072,671	+				+1.5
1,072,675	+				+0.2
1,072,676	-				+0.3
1,072,689	+				-2.4
1,072,704	+				-1.7
1,072,705	-				-0.2
1,072,714	-				-0.5
1,072,725	+				-1.9
1,072,726	-				-0.4
1,072,752	+				-1.1
1,072,752	+				-0.9
1,072,752	+				-0.1
1,072,752	+				-1.9
1,072,752	+				+1.1
1,072,753	-				-0.2
1,072,753	-				+0.5
1,072,753	-				+0.5
1,072,790	+				-1.4
1,072,790	+				-0.3
1,072,791	-				-0.7
1,072,791	-				-2.5
1,072,791	-				-3.4
1,072,791	-				+0.1
1,072,791	-				+2.3
1,072,801	+				-0.0
1,072,933	+				-1.5
1,072,933	+				-0.8
1,072,933	+				+0.1
1,072,985	-				+0.0
1,072,985	-				+0.5
1,073,075	-				+0.4
1,073,075	-				+0.8
1,073,087	+				+0.3
1,073,088	-				+0.3
1,073,088	-				-0.7
1,073,151	+				-0.5
1,073,151	+				+0.5
1,073,151	+				+0.7
1,073,151	+				-1.0
1,073,151	+				-1.5
1,073,151	+				-0.1
1,073,152	-				-1.1
1,073,172	-				+0.6
1,073,172	-				-0.2
1,073,186	-				-0.7
1,073,186	-				+0.5
1,073,208	+				-0.7
1,073,208	+				+0.6
1,073,209	-				+0.7
1,073,209	-				-0.2
1,073,290	-				-1.7
1,073,333	-				+0.5
1,073,348	+				+0.7
1,073,367	+				-1.1
1,073,367	+				-0.5
1,073,368	-				-0.5
1,073,368	-				-0.6
1,073,400	+				+0.5
1,073,400	+				+0.1
1,073,400	+				+0.5
1,073,400	+				-0.5
1,073,400	+				-1.4
1,073,401	-				+0.5
1,073,401	-				+0.1
1,073,401	-				+0.9
1,073,401	-				-0.2
1,073,422	-				+0.9
1,073,436	+				-0.9
1,073,436	+				+1.2
1,073,437	-				-1.8
1,073,437	-				-0.2
1,073,482	+				-0.3
1,073,482	+				+0.1
1,073,482	+				-0.3
1,073,482	+				+0.0
1,073,483	-				-2.1
1,073,483	-				-0.7
1,073,483	-				+0.2
1,073,483	-				-1.7
1,073,494	+				-1.3
1,073,494	+				-1.1
1,073,495	-				-0.8
1,073,495	-				+0.8
1,073,495	-				-0.5
1,073,512	+				+3.5
1,073,512	+				+0.7
1,073,512	+				+1.0
1,073,512	+				-0.6
1,073,512	+				-1.9
1,073,512	+				+0.6
1,073,512	+				+0.9
1,073,512	+				+3.0
1,073,512	+				-2.4
1,073,512	+				+0.3
1,073,513	-				+0.0
1,073,518	+				-0.8
1,073,519	-				+0.9
1,073,546	+				+1.0
1,073,546	+				+1.6
1,073,546	+				+1.3
1,073,546	+				+0.5
1,073,546	+				-0.9
1,073,546	+				-0.0
1,073,546	+				-1.2
1,073,546	+				+0.5
1,073,547	-				-0.7
1,073,547	-				+0.5
1,073,547	-				-1.5
1,073,547	-				-0.9
1,073,547	-				-0.2
1,073,547	-				+0.7
1,073,547	-				+2.5
1,073,547	-				-0.5
1,073,577	-				-0.8
1,073,577	-				-0.1
1,073,589	+				-1.9
1,073,603	-				-0.9