Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05155

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,061,906	+				-0.9
1,061,906	+				-0.8
1,061,906	+				+0.9
1,061,906	+				-2.3
1,061,907	-				-2.9
1,061,907	-				+0.2
1,061,907	-				-2.3
1,061,907	-				+2.0
1,061,907	-				+0.1
1,061,914	+				+0.7
1,061,915	-				-1.0
1,061,956	+		DZA65_RS05145	0.12	-1.1
1,061,956	+		DZA65_RS05145	0.12	+0.9
1,061,956	+		DZA65_RS05145	0.12	+0.0
1,061,957	-		DZA65_RS05145	0.12	+0.1
1,061,957	-		DZA65_RS05145	0.12	-2.3
1,061,957	-		DZA65_RS05145	0.12	-0.6
1,061,970	+		DZA65_RS05145	0.18	+0.7
1,061,970	+		DZA65_RS05145	0.18	-0.1
1,061,977	+		DZA65_RS05145	0.21	-0.2
1,061,977	+		DZA65_RS05145	0.21	-0.3
1,061,982	+		DZA65_RS05145	0.23	+1.1
1,061,982	+		DZA65_RS05145	0.23	-0.9
1,061,982	+		DZA65_RS05145	0.23	-0.5
1,061,982	+		DZA65_RS05145	0.23	+0.1
1,061,982	+		DZA65_RS05145	0.23	-0.1
1,061,983	-		DZA65_RS05145	0.23	-0.2
1,061,983	-		DZA65_RS05145	0.23	+0.4
1,061,983	-		DZA65_RS05145	0.23	+1.0
1,061,983	-		DZA65_RS05145	0.23	+0.4
1,062,095	+		DZA65_RS05145	0.72	-0.9
1,062,117	+		DZA65_RS05145	0.81	-0.0
1,062,121	-		DZA65_RS05145	0.83	+1.0
1,062,185	-				-0.5
1,062,247	+				+2.0
1,062,248	-				+0.3
1,062,248	-				+1.3
1,062,248	-				-0.9
1,062,310	+		DZA65_RS05150	0.30	-1.0
1,062,322	+		DZA65_RS05150	0.35	-0.3
1,062,323	-		DZA65_RS05150	0.35	-0.1
1,062,323	-		DZA65_RS05150	0.35	-1.1
1,062,340	+		DZA65_RS05150	0.41	+0.7
1,062,340	+		DZA65_RS05150	0.41	-1.4
1,062,340	+		DZA65_RS05150	0.41	-0.7
1,062,340	+		DZA65_RS05150	0.41	+0.3
1,062,340	+		DZA65_RS05150	0.41	+0.1
1,062,341	-		DZA65_RS05150	0.42	-0.5
1,062,341	-		DZA65_RS05150	0.42	+0.3
1,062,341	-		DZA65_RS05150	0.42	+1.0
1,062,341	-		DZA65_RS05150	0.42	-0.9
1,062,341	-		DZA65_RS05150	0.42	-0.6
1,062,341	-		DZA65_RS05150	0.42	+1.5
1,062,341	-		DZA65_RS05150	0.42	-0.3
1,062,341	-		DZA65_RS05150	0.42	-0.3
1,062,344	+		DZA65_RS05150	0.43	+1.7
1,062,386	+		DZA65_RS05150	0.59	-1.1
1,062,387	-		DZA65_RS05150	0.59	+0.1
1,062,387	-		DZA65_RS05150	0.59	+1.0
1,062,387	-		DZA65_RS05150	0.59	-0.2
1,062,387	-		DZA65_RS05150	0.59	+0.5
1,062,387	-		DZA65_RS05150	0.59	+0.3
1,062,394	+		DZA65_RS05150	0.61	+0.9
1,062,394	+		DZA65_RS05150	0.61	+1.0
1,062,395	-		DZA65_RS05150	0.62	+0.8
1,062,412	+		DZA65_RS05150	0.68	+0.5
1,062,440	-		DZA65_RS05150	0.79	+0.7
1,062,497	+				-3.9
1,062,498	-				-0.1
1,062,498	-				+2.6
1,062,498	-				+0.3
1,062,516	-				+0.4
1,062,516	-				-0.7
1,062,520	-				+0.2
1,062,520	-				+0.5
1,062,532	+				+1.3
1,062,574	+				+0.8
1,062,574	+				-1.0
1,062,575	-				-1.5
1,062,575	-				+0.3
1,062,579	+				-1.1
1,062,579	+				-0.9
1,062,579	+				+1.2
1,062,579	+				-2.1
1,062,580	-				-1.9
1,062,580	-				-0.1
1,062,580	-				+4.1
1,062,580	-				-1.4
1,062,580	-				+0.3
1,062,593	+				-1.2
1,062,633	-				+0.5
1,062,647	+				-2.7
1,062,647	+				-0.2
1,062,647	+				-1.1
1,062,663	+				-1.3
1,062,663	+				-2.5
1,062,663	+				-1.5
1,062,663	+				-0.5
1,062,664	-				+1.0
1,062,664	-				+0.5
1,062,664	-				+0.7
1,062,714	+				-0.5
1,062,715	-				+1.6
1,062,715	-				-0.1
1,062,715	-				-0.4
1,062,720	+				+0.6
1,062,721	-				-0.3
1,062,721	-				+1.2
1,062,751	+				-0.9
1,062,756	+				+0.7
1,062,757	-				+2.3
1,062,757	-				-1.3
1,062,762	+				-1.1
1,062,768	-				+0.9
1,062,818	+				+1.0
1,062,818	+				+0.0
1,062,833	-				-0.0
1,062,833	-				+0.5
1,062,876	+				+0.0
1,062,876	+				+0.0
1,062,876	+				+2.3
1,062,877	-				-1.0
1,062,877	-				+0.1
1,062,901	+		DZA65_RS05155	0.10	-1.0
1,062,901	+		DZA65_RS05155	0.10	+0.4
1,062,913	+		DZA65_RS05155	0.12	-0.1
1,062,914	-		DZA65_RS05155	0.12	+0.5
1,062,914	-		DZA65_RS05155	0.12	-3.5
1,062,957	+		DZA65_RS05155	0.18	+1.1
1,062,966	-		DZA65_RS05155	0.19	+0.2
1,062,966	-		DZA65_RS05155	0.19	-0.1
1,062,966	-		DZA65_RS05155	0.19	+0.5
1,062,988	+		DZA65_RS05155	0.23	-0.9
1,062,989	-		DZA65_RS05155	0.23	+1.0
1,062,991	+		DZA65_RS05155	0.23	-0.1
1,062,991	+		DZA65_RS05155	0.23	+1.0
1,062,991	+		DZA65_RS05155	0.23	+0.2
1,062,991	+		DZA65_RS05155	0.23	+0.5
1,062,991	+		DZA65_RS05155	0.23	-1.4
1,062,992	-		DZA65_RS05155	0.23	-1.1
1,062,992	-		DZA65_RS05155	0.23	+0.6
1,062,992	-		DZA65_RS05155	0.23	-0.7
1,062,992	-		DZA65_RS05155	0.23	-0.1
1,063,029	-		DZA65_RS05155	0.29	+0.5
1,063,029	-		DZA65_RS05155	0.29	-0.6
1,063,103	+		DZA65_RS05155	0.39	+1.5
1,063,104	-		DZA65_RS05155	0.39	+0.3
1,063,118	+		DZA65_RS05155	0.41	-0.5
1,063,119	-		DZA65_RS05155	0.42	+0.5
1,063,156	-		DZA65_RS05155	0.47	-0.3
1,063,168	-		DZA65_RS05155	0.49	+0.9
1,063,168	-		DZA65_RS05155	0.49	-1.3
1,063,170	+		DZA65_RS05155	0.49	-0.4
1,063,170	+		DZA65_RS05155	0.49	+0.3
1,063,171	-		DZA65_RS05155	0.49	-0.2
1,063,171	-		DZA65_RS05155	0.49	+0.9
1,063,171	-		DZA65_RS05155	0.49	-0.3
1,063,184	-		DZA65_RS05155	0.51	-1.1
1,063,217	-		DZA65_RS05155	0.56	+0.5
1,063,226	+		DZA65_RS05155	0.57	-0.7
1,063,227	-		DZA65_RS05155	0.57	+0.5
1,063,227	-		DZA65_RS05155	0.57	+0.5
1,063,255	+		DZA65_RS05155	0.61	+1.8
1,063,255	+		DZA65_RS05155	0.61	+1.5
1,063,255	+		DZA65_RS05155	0.61	-1.4
1,063,255	+		DZA65_RS05155	0.61	+0.1
1,063,256	-		DZA65_RS05155	0.61	+0.5
1,063,256	-		DZA65_RS05155	0.61	-0.3
1,063,258	+		DZA65_RS05155	0.62	-0.5
1,063,259	-		DZA65_RS05155	0.62	+2.8
1,063,309	+		DZA65_RS05155	0.69	+2.5
1,063,309	+		DZA65_RS05155	0.69	+0.5
1,063,309	+		DZA65_RS05155	0.69	+0.7
1,063,309	+		DZA65_RS05155	0.69	-0.4
1,063,309	+		DZA65_RS05155	0.69	-0.3
1,063,309	+		DZA65_RS05155	0.69	-1.1
1,063,309	+		DZA65_RS05155	0.69	-0.0
1,063,309	+		DZA65_RS05155	0.69	+0.2
1,063,309	+		DZA65_RS05155	0.69	+0.4
1,063,309	+		DZA65_RS05155	0.69	-1.1
1,063,309	+		DZA65_RS05155	0.69	+0.3
1,063,309	+		DZA65_RS05155	0.69	+0.5
1,063,310	-		DZA65_RS05155	0.69	+0.2
1,063,310	-		DZA65_RS05155	0.69	-0.2
1,063,310	-		DZA65_RS05155	0.69	+0.3
1,063,310	-		DZA65_RS05155	0.69	-1.5
1,063,310	-		DZA65_RS05155	0.69	+1.2
1,063,310	-		DZA65_RS05155	0.69	+0.7
1,063,310	-		DZA65_RS05155	0.69	-0.0
1,063,310	-		DZA65_RS05155	0.69	+0.3
1,063,310	-				-1.1
1,063,310	-		DZA65_RS05155	0.69	+1.6
1,063,310	-		DZA65_RS05155	0.69	+0.3
1,063,310	-		DZA65_RS05155	0.69	+0.5
1,063,310	-		DZA65_RS05155	0.69	+0.5
1,063,310	-		DZA65_RS05155	0.69	+0.1
1,063,310	-		DZA65_RS05155	0.69	+0.0
1,063,311	+		DZA65_RS05155	0.69	-0.5
1,063,311	+		DZA65_RS05155	0.69	-2.7
1,063,404	-		DZA65_RS05155	0.83	+0.6
1,063,460	+				+0.6
1,063,461	-				+2.0
1,063,616	-				-1.2
1,063,702	-				-1.0
1,063,846	+		DZA65_RS05165	0.29	+0.6
1,063,861	+		DZA65_RS05165	0.34	+0.9
1,063,955	-		DZA65_RS05165	0.62	+1.6
1,064,149	+				+0.5
1,064,230	+		DZA65_RS05170	0.19	+1.0
1,064,230	+		DZA65_RS05170	0.19	+0.6
1,064,230	+		DZA65_RS05170	0.19	-0.1
1,064,231	-		DZA65_RS05170	0.19	-0.1
1,064,231	-		DZA65_RS05170	0.19	+1.2
1,064,231	-		DZA65_RS05170	0.19	-1.0
1,064,249	+		DZA65_RS05170	0.21	+1.5
1,064,294	-		DZA65_RS05170	0.27	-0.3
1,064,294	-		DZA65_RS05170	0.27	-1.1
1,064,305	-		DZA65_RS05170	0.29	-0.7
1,064,305	-		DZA65_RS05170	0.29	+1.6
1,064,344	-		DZA65_RS05170	0.34	+0.6
1,064,382	+		DZA65_RS05170	0.39	-0.3
1,064,467	+		DZA65_RS05170	0.50	-0.7
1,064,467	+		DZA65_RS05170	0.50	-0.3
1,064,467	+		DZA65_RS05170	0.50	+0.1
1,064,468	-		DZA65_RS05170	0.50	+1.5
1,064,468	-		DZA65_RS05170	0.50	-2.4
1,064,468	-		DZA65_RS05170	0.50	+0.7