Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05115

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,055,962	+		DZA65_RS05110	0.64	-1.0
1,055,963	-		DZA65_RS05110	0.64	-0.5
1,055,969	-		DZA65_RS05110	0.65	+0.5
1,056,073	+		DZA65_RS05110	0.76	-0.3
1,056,073	+		DZA65_RS05110	0.76	-0.5
1,056,110	+		DZA65_RS05110	0.80	+0.9
1,056,110	+		DZA65_RS05110	0.80	+0.5
1,056,111	-		DZA65_RS05110	0.81	-1.1
1,056,121	+		DZA65_RS05110	0.82	-0.5
1,056,121	+		DZA65_RS05110	0.82	+1.7
1,056,122	-		DZA65_RS05110	0.82	+0.6
1,056,122	-		DZA65_RS05110	0.82	+0.8
1,056,131	+		DZA65_RS05110	0.83	-0.1
1,056,132	-		DZA65_RS05110	0.83	-1.9
1,056,137	+		DZA65_RS05110	0.84	+0.6
1,056,216	+				+0.9
1,056,217	-				+0.0
1,056,239	+				+0.5
1,056,242	+				-2.6
1,056,242	+				-1.1
1,056,242	+				-0.1
1,056,243	-				-1.9
1,056,243	-				-2.0
1,056,255	+				+1.1
1,056,256	-				+0.6
1,056,257	+				-0.4
1,056,257	+				+0.6
1,056,258	-				-1.1
1,056,258	-				-0.9
1,056,258	-				-2.1
1,056,262	+				+0.5
1,056,263	-				+0.2
1,056,263	-				+0.6
1,056,281	+				+2.0
1,056,281	+				-0.4
1,056,282	-				+0.0
1,056,312	-				-0.2
1,056,413	+				-1.2
1,056,441	+				+0.2
1,056,458	-				+1.4
1,056,458	-				-0.4
1,056,484	+				-0.5
1,056,485	-				-0.5
1,056,485	-				-0.0
1,056,485	-				+0.6
1,056,485	-				+1.5
1,056,485	-				+0.6
1,056,485	-				-1.1
1,056,485	-				+0.9
1,056,486	+				+0.8
1,056,487	-				+0.4
1,056,490	-				-0.2
1,056,490	-				-1.1
1,056,603	+				+2.0
1,056,603	+				+1.3
1,056,603	+				+1.0
1,056,603	+				-1.0
1,056,603	+				+0.7
1,056,603	+				-1.9
1,056,603	+				-0.4
1,056,603	+				-0.2
1,056,638	+				-0.0
1,056,638	+				-2.3
1,056,639	-				-0.2
1,056,649	-				-0.7
1,056,715	+				+0.3
1,056,716	-				-1.9
1,056,736	-				-0.3
1,056,770	-				+1.5
1,056,778	+				+0.4
1,056,778	+				+0.5
1,056,778	+				-0.7
1,056,778	+				+0.7
1,056,779	-				+0.9
1,056,791	+				+1.7
1,056,791	+				-0.3
1,056,791	+				+0.5
1,056,791	+				+0.0
1,056,791	+				-0.5
1,056,792	-				-0.1
1,056,792	-				+1.0
1,056,792	-				+0.8
1,056,807	+				-2.3
1,056,837	+				+0.5
1,056,837	+				-0.3
1,056,837	+				+0.9
1,056,837	+				+0.7
1,056,837	+				-0.9
1,056,838	-				-0.3
1,056,838	-				-1.5
1,056,838	-				-0.3
1,056,838	-				-0.1
1,056,848	+				-0.5
1,056,848	+				-1.3
1,056,849	-				+0.1
1,056,849	-				+1.5
1,056,849	-				+0.8
1,056,859	+				+0.4
1,056,867	+				-0.7
1,056,868	-				+1.9
1,056,868	-				+1.1
1,056,949	-				-0.8
1,056,949	-				+2.0
1,056,949	-				-0.4
1,056,960	+				+0.9
1,056,960	+				+2.3
1,056,960	+				+0.3
1,056,960	+				-0.5
1,056,961	-				+0.0
1,056,965	-				-0.7
1,056,965	-				+2.7
1,057,018	+		DZA65_RS05115	0.26	-2.5
1,057,019	-		DZA65_RS05115	0.27	-0.4
1,057,076	+		DZA65_RS05115	0.47	+0.5
1,057,076	+		DZA65_RS05115	0.47	-0.2
1,057,076	+		DZA65_RS05115	0.47	+0.9
1,057,076	+		DZA65_RS05115	0.47	+0.9
1,057,076	+		DZA65_RS05115	0.47	+0.1
1,057,076	+		DZA65_RS05115	0.47	+2.3
1,057,076	+		DZA65_RS05115	0.47	-0.6
1,057,076	+		DZA65_RS05115	0.47	+0.3
1,057,076	+		DZA65_RS05115	0.47	-0.5
1,057,076	+		DZA65_RS05115	0.47	+1.7
1,057,076	+		DZA65_RS05115	0.47	-0.1
1,057,076	+		DZA65_RS05115	0.47	-1.0
1,057,076	+		DZA65_RS05115	0.47	+0.3
1,057,076	+		DZA65_RS05115	0.47	+0.1
1,057,076	+		DZA65_RS05115	0.47	-0.3
1,057,076	+		DZA65_RS05115	0.47	+0.2
1,057,076	+		DZA65_RS05115	0.47	-0.0
1,057,076	+		DZA65_RS05115	0.47	-1.5
1,057,076	+		DZA65_RS05115	0.47	-2.0
1,057,076	+		DZA65_RS05115	0.47	+1.7
1,057,076	+		DZA65_RS05115	0.47	+0.5
1,057,076	+		DZA65_RS05115	0.47	+0.5
1,057,076	+		DZA65_RS05115	0.47	-1.1
1,057,076	+		DZA65_RS05115	0.47	+2.0
1,057,076	+		DZA65_RS05115	0.47	+0.5
1,057,076	+		DZA65_RS05115	0.47	-0.3
1,057,076	+		DZA65_RS05115	0.47	-2.3
1,057,076	+		DZA65_RS05115	0.47	+1.6
1,057,077	-		DZA65_RS05115	0.47	-1.9
1,057,077	-		DZA65_RS05115	0.47	+3.0
1,057,077	-		DZA65_RS05115	0.47	-0.3
1,057,077	-		DZA65_RS05115	0.47	+0.3
1,057,077	-		DZA65_RS05115	0.47	+0.5
1,057,077	-		DZA65_RS05115	0.47	+0.5
1,057,077	-		DZA65_RS05115	0.47	-0.0
1,057,077	-		DZA65_RS05115	0.47	+0.1
1,057,077	-		DZA65_RS05115	0.47	-0.3
1,057,077	-		DZA65_RS05115	0.47	+1.8
1,057,077	-		DZA65_RS05115	0.47	+0.5
1,057,077	-		DZA65_RS05115	0.47	-0.5
1,057,077	-		DZA65_RS05115	0.47	-0.5
1,057,077	-		DZA65_RS05115	0.47	+1.6
1,057,077	-				+2.6
1,057,077	-		DZA65_RS05115	0.47	+0.1
1,057,148	-		DZA65_RS05115	0.72	-0.2
1,057,177	+		DZA65_RS05115	0.83	+0.7
1,057,177	+				-0.5
1,057,177	+		DZA65_RS05115	0.83	+0.1
1,057,177	+		DZA65_RS05115	0.83	+1.3
1,057,177	+		DZA65_RS05115	0.83	+0.2
1,057,177	+		DZA65_RS05115	0.83	+0.5
1,057,177	+		DZA65_RS05115	0.83	+1.0
1,057,178	-		DZA65_RS05115	0.83	+0.7
1,057,178	-		DZA65_RS05115	0.83	+0.2
1,057,178	-		DZA65_RS05115	0.83	-0.3
1,057,178	-				+1.0
1,057,179	+		DZA65_RS05115	0.83	-2.9
1,057,179	+		DZA65_RS05115	0.83	-1.7
1,057,179	+		DZA65_RS05115	0.83	+0.0
1,057,179	+		DZA65_RS05115	0.83	+0.0
1,057,179	+		DZA65_RS05115	0.83	+1.4
1,057,180	-		DZA65_RS05115	0.84	+0.7
1,057,180	-		DZA65_RS05115	0.84	+0.8
1,057,180	-		DZA65_RS05115	0.84	-0.3
1,057,180	-		DZA65_RS05115	0.84	-0.9
1,057,203	-				+1.3
1,057,223	+				+0.0
1,057,224	-				+2.8
1,057,224	-				+3.0
1,057,322	+				-0.7
1,057,322	+				-0.8
1,057,322	+				-1.1
1,057,322	+				-0.3
1,057,323	-				+2.3
1,057,336	+				-1.1
1,057,336	+				+1.4
1,057,336	+				+0.0
1,057,336	+				-0.9
1,057,337	-				+0.4
1,057,337	-				+0.5
1,057,348	-				+1.2
1,057,411	+				+0.3
1,057,427	+				+1.0
1,057,428	-				+0.1
1,057,449	+				-1.1
1,057,479	+				+1.3
1,057,480	-				-2.0
1,057,480	-				+0.3
1,057,514	+				-1.5
1,057,514	+				-0.5
1,057,514	+				-0.9
1,057,514	+				-0.2
1,057,514	+				-0.7
1,057,514	+				-1.5
1,057,514	+				-0.2
1,057,514	+				+0.6
1,057,514	+				+1.6
1,057,514	+				-0.5
1,057,514	+				+2.3
1,057,514	+				+0.7
1,057,514	+				+0.7
1,057,514	+				-1.9
1,057,514	+				-0.1
1,057,514	+				+0.3
1,057,514	+				+0.1
1,057,514	+				+0.4
1,057,514	+				+0.5
1,057,514	+				-0.7
1,057,515	-				-0.3
1,057,515	-				-0.8
1,057,515	-				+0.2
1,057,515	-				+1.5
1,057,515	-				+1.2
1,057,515	-				+3.4
1,057,515	-				+0.8
1,057,515	-				-0.5
1,057,515	-				+0.1
1,057,515	-				-0.9
1,057,515	-				-1.5
1,057,516	+				+0.5
1,057,516	+				+0.6
1,057,516	+				-0.5
1,057,516	+				-0.9
1,057,516	+				-1.0
1,057,516	+				-2.5
1,057,516	+				+0.3
1,057,516	+				-0.3
1,057,516	+				+0.1
1,057,517	-				-1.1
1,057,517	-				+0.3
1,057,523	+				-0.5
1,057,523	+				+0.4
1,057,523	+				+0.2
1,057,523	+				+0.1
1,057,523	+				+0.9
1,057,524	-				+0.9
1,057,524	-				-1.1
1,057,559	+				+0.7
1,057,559	+				+0.6
1,057,559	+				-1.9
1,057,559	+				-0.1
1,057,559	+				-0.5
1,057,559	+				-0.3
1,057,559	+				-0.1
1,057,560	-				-1.2
1,057,560	-				+0.9
1,057,560	-				+0.0
1,057,560	-				-1.5
1,057,560	-				+2.8
1,057,560	-				-1.9
1,057,560	-				-1.4
1,057,560	-				+0.3
1,057,560	-				-0.9
1,057,563	+				+0.5
1,057,563	+				+1.8
1,057,563	+				+0.8
1,057,563	+				-0.4
1,057,563	+				+0.5
1,057,563	+				-0.3
1,057,563	+				-0.4
1,057,563	+				-1.7
1,057,564	-				-0.9
1,057,564	-				+0.8
1,057,564	-				+1.8
1,057,564	-				-0.5
1,057,564	-				+0.8
1,057,564	-				+0.9
1,057,564	-				+0.5
1,057,611	-		DZA65_RS05125	0.13	+0.7
1,057,627	+		DZA65_RS05125	0.17	+0.7
1,057,627	+		DZA65_RS05125	0.17	+0.8
1,057,627	+		DZA65_RS05125	0.17	+0.1
1,057,627	+		DZA65_RS05125	0.17	-1.9
1,057,628	-		DZA65_RS05125	0.17	-1.9
1,057,628	-		DZA65_RS05125	0.17	+0.9
1,057,628	-		DZA65_RS05125	0.17	+0.9
1,057,628	-		DZA65_RS05125	0.17	+1.3
1,057,657	+		DZA65_RS05125	0.25	-1.8
1,057,657	+		DZA65_RS05125	0.25	-0.7
1,057,658	-		DZA65_RS05125	0.25	+0.3
1,057,658	-		DZA65_RS05125	0.25	+2.0
1,057,658	-		DZA65_RS05125	0.25	-0.7
1,057,658	-		DZA65_RS05125	0.25	-0.5
1,057,658	-		DZA65_RS05125	0.25	+0.5
1,057,658	-		DZA65_RS05125	0.25	-1.0
1,057,658	-		DZA65_RS05125	0.25	-0.9
1,057,658	-		DZA65_RS05125	0.25	-2.3
1,057,658	-		DZA65_RS05125	0.25	-2.2
1,057,658	-		DZA65_RS05125	0.25	-1.1
1,057,658	-		DZA65_RS05125	0.25	-0.5
1,057,686	-		DZA65_RS05125	0.33	+0.5
1,057,699	+		DZA65_RS05125	0.36	+0.2
1,057,700	-		DZA65_RS05125	0.37	-1.0
1,057,700	-		DZA65_RS05125	0.37	+0.1
1,057,700	-		DZA65_RS05125	0.37	+0.5
1,057,757	+		DZA65_RS05125	0.52	-0.5
1,057,757	+		DZA65_RS05125	0.52	+0.9
1,057,758	-		DZA65_RS05125	0.52	+0.4
1,057,802	-		DZA65_RS05125	0.64	+0.2
1,057,802	-		DZA65_RS05125	0.64	+1.0
1,057,839	+		DZA65_RS05125	0.74	-1.5
1,057,955	+				+1.5
1,057,956	-				+0.1
1,058,005	+				-0.8
1,058,026	-				+0.2
1,058,036	+				-1.1
1,058,036	+				-0.8
1,058,037	-				-0.7
1,058,037	-				+0.2
1,058,088	+				-0.5
1,058,135	+				+1.4
1,058,135	+				+0.6
1,058,135	+				-1.0
1,058,135	+				-0.5
1,058,135	+				+0.5
1,058,136	-				-0.5
1,058,201	+				+1.0
1,058,203	+				-1.1
1,058,203	+				+0.2
1,058,203	+				-1.5
1,058,203	+				+0.9
1,058,203	+				-0.7
1,058,203	+				-0.8
1,058,203	+				-0.5
1,058,203	+				+0.7
1,058,203	+				-0.5
1,058,203	+				-0.7
1,058,204	-				+2.0
1,058,204	-				+0.5