Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04380 and DZA65_RS04385 are separated by 148 nucleotides DZA65_RS04385 and DZA65_RS04390 are separated by 46 nucleotides DZA65_RS04390 and DZA65_RS04395 are separated by 448 nucleotides
DZA65_RS04380: DZA65_RS04380 - cell division protein ZipA, at 913,406 to 914,305
_RS04380
DZA65_RS04385: DZA65_RS04385 - L-methionine/branched-chain amino acid transporter, at 914,454 to 915,707
_RS04385
DZA65_RS04390: DZA65_RS04390 - accessory factor UbiK family protein, at 915,754 to 916,038
_RS04390
DZA65_RS04395: DZA65_RS04395 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 916,487 to 917,140
_RS04395
Position (kb) 914
915
916 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 914.274 kb on + strand at 914.274 kb on + strand at 914.275 kb on - strand at 914.275 kb on - strand at 914.275 kb on - strand at 914.278 kb on + strand at 914.278 kb on + strand at 914.278 kb on + strand at 914.278 kb on + strand at 914.279 kb on - strand at 914.279 kb on - strand at 914.279 kb on - strand at 914.279 kb on - strand at 914.279 kb on - strand at 914.284 kb on + strand at 914.284 kb on + strand at 914.287 kb on + strand at 914.287 kb on + strand at 914.287 kb on + strand at 914.288 kb on - strand at 914.288 kb on - strand at 914.288 kb on - strand at 914.288 kb on - strand at 914.290 kb on + strand at 914.290 kb on + strand at 914.290 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.324 kb on + strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.325 kb on - strand at 914.330 kb on + strand at 914.330 kb on + strand at 914.331 kb on - strand at 914.331 kb on - strand at 914.331 kb on - strand at 914.365 kb on - strand at 914.365 kb on - strand at 914.419 kb on + strand at 914.465 kb on + strand at 914.466 kb on - strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.468 kb on + strand at 914.469 kb on - strand at 914.469 kb on - strand at 914.469 kb on - strand at 914.469 kb on - strand at 914.469 kb on - strand at 914.473 kb on + strand at 914.682 kb on + strand, within DZA65_RS04385 at 914.682 kb on + strand, within DZA65_RS04385 at 914.682 kb on + strand, within DZA65_RS04385 at 914.682 kb on + strand, within DZA65_RS04385 at 914.682 kb on + strand, within DZA65_RS04385 at 914.903 kb on - strand, within DZA65_RS04385 at 914.903 kb on - strand, within DZA65_RS04385 at 914.903 kb on - strand, within DZA65_RS04385 at 914.966 kb on + strand, within DZA65_RS04385 at 915.130 kb on + strand, within DZA65_RS04385 at 915.130 kb on + strand, within DZA65_RS04385 at 915.130 kb on + strand, within DZA65_RS04385 at 915.130 kb on + strand, within DZA65_RS04385 at 915.130 kb on + strand, within DZA65_RS04385 at 915.131 kb on - strand, within DZA65_RS04385 at 915.131 kb on - strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.167 kb on + strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.168 kb on - strand, within DZA65_RS04385 at 915.314 kb on + strand, within DZA65_RS04385 at 915.314 kb on + strand at 915.314 kb on + strand, within DZA65_RS04385 at 915.314 kb on + strand, within DZA65_RS04385 at 915.314 kb on + strand, within DZA65_RS04385 at 915.314 kb on + strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.315 kb on - strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.318 kb on + strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.319 kb on - strand, within DZA65_RS04385 at 915.321 kb on - strand, within DZA65_RS04385 at 915.395 kb on + strand, within DZA65_RS04385 at 915.452 kb on + strand, within DZA65_RS04385 at 915.452 kb on + strand, within DZA65_RS04385 at 915.452 kb on + strand, within DZA65_RS04385 at 915.452 kb on + strand, within DZA65_RS04385 at 915.453 kb on - strand, within DZA65_RS04385 at 915.453 kb on - strand, within DZA65_RS04385 at 915.457 kb on - strand at 915.519 kb on + strand, within DZA65_RS04385 at 915.519 kb on + strand, within DZA65_RS04385 at 915.519 kb on + strand, within DZA65_RS04385 at 915.520 kb on - strand, within DZA65_RS04385 at 915.520 kb on - strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.523 kb on + strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.524 kb on - strand, within DZA65_RS04385 at 915.701 kb on + strand at 915.755 kb on + strand at 915.755 kb on + strand at 915.756 kb on - strand at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.822 kb on + strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.823 kb on - strand, within DZA65_RS04390 at 915.953 kb on - strand, within DZA65_RS04390 at 916.073 kb on + strand at 916.073 kb on + strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.074 kb on - strand at 916.075 kb on + strand at 916.075 kb on + strand at 916.075 kb on + strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.076 kb on - strand at 916.086 kb on + strand at 916.086 kb on + strand at 916.086 kb on + strand at 916.105 kb on + strand at 916.148 kb on + strand at 916.148 kb on + strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.149 kb on - strand at 916.159 kb on + strand at 916.188 kb on + strand at 916.188 kb on + strand at 916.190 kb on + strand at 916.190 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.193 kb on + strand at 916.203 kb on + strand at 916.315 kb on + strand at 916.336 kb on + strand at 916.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 914,274 + +0.2 914,274 + -2.8 914,275 - -1.1 914,275 - -0.8 914,275 - -2.3 914,278 + -0.6 914,278 + +1.2 914,278 + -0.0 914,278 + -0.0 914,279 - -0.3 914,279 - +0.3 914,279 - -0.8 914,279 - -0.7 914,279 - -4.0 914,284 + +0.1 914,284 + -1.1 914,287 + +0.5 914,287 + -0.5 914,287 + -0.8 914,288 - +1.5 914,288 - -2.1 914,288 - -1.0 914,288 - -1.8 914,290 + +1.3 914,290 + +1.1 914,290 + -1.1 914,324 + +0.6 914,324 + -0.9 914,324 + -0.8 914,324 + -0.1 914,324 + -0.5 914,324 + +0.3 914,324 + +1.1 914,324 + -0.1 914,324 + +0.3 914,324 + -0.6 914,324 + +0.5 914,324 + +0.2 914,324 + -0.2 914,325 - +0.3 914,325 - -1.2 914,325 - -0.6 914,325 - -0.5 914,325 - -0.5 914,325 - -1.8 914,325 - -0.8 914,325 - +0.8 914,325 - +0.2 914,325 - -1.0 914,330 + -0.5 914,330 + -0.5 914,331 - +1.2 914,331 - +0.8 914,331 - +0.2 914,365 - -0.3 914,365 - +0.5 914,419 + +1.5 914,465 + +0.8 914,466 - -0.5 914,468 + +1.4 914,468 + +1.0 914,468 + +0.3 914,468 + -0.5 914,468 + -0.0 914,468 + +1.6 914,468 + +1.8 914,469 - +1.0 914,469 - -1.5 914,469 - +0.7 914,469 - +0.7 914,469 - +0.5 914,473 + -1.0 914,682 + DZA65_RS04385 0.18 -0.2 914,682 + DZA65_RS04385 0.18 -1.3 914,682 + DZA65_RS04385 0.18 +0.0 914,682 + DZA65_RS04385 0.18 -0.7 914,682 + DZA65_RS04385 0.18 -0.8 914,903 - DZA65_RS04385 0.36 +0.7 914,903 - DZA65_RS04385 0.36 -1.2 914,903 - DZA65_RS04385 0.36 +0.5 914,966 + DZA65_RS04385 0.41 -0.7 915,130 + DZA65_RS04385 0.54 +0.4 915,130 + DZA65_RS04385 0.54 +0.7 915,130 + DZA65_RS04385 0.54 +0.5 915,130 + DZA65_RS04385 0.54 -1.1 915,130 + DZA65_RS04385 0.54 -0.4 915,131 - DZA65_RS04385 0.54 +0.5 915,131 - DZA65_RS04385 0.54 -0.8 915,167 + DZA65_RS04385 0.57 +0.2 915,167 + DZA65_RS04385 0.57 -0.8 915,167 + DZA65_RS04385 0.57 +0.5 915,167 + DZA65_RS04385 0.57 +0.9 915,167 + DZA65_RS04385 0.57 -0.1 915,167 + DZA65_RS04385 0.57 -1.8 915,167 + DZA65_RS04385 0.57 -1.3 915,168 - DZA65_RS04385 0.57 -0.3 915,168 - DZA65_RS04385 0.57 +2.0 915,168 - DZA65_RS04385 0.57 -0.2 915,168 - DZA65_RS04385 0.57 +0.8 915,168 - DZA65_RS04385 0.57 +0.5 915,168 - DZA65_RS04385 0.57 +0.2 915,168 - DZA65_RS04385 0.57 -1.1 915,168 - DZA65_RS04385 0.57 +0.2 915,168 - DZA65_RS04385 0.57 -0.8 915,168 - DZA65_RS04385 0.57 +0.1 915,314 + DZA65_RS04385 0.69 -0.5 915,314 + +0.5 915,314 + DZA65_RS04385 0.69 +0.2 915,314 + DZA65_RS04385 0.69 +0.5 915,314 + DZA65_RS04385 0.69 +1.1 915,314 + DZA65_RS04385 0.69 +0.8 915,315 - DZA65_RS04385 0.69 -0.6 915,315 - DZA65_RS04385 0.69 -0.6 915,315 - DZA65_RS04385 0.69 +0.2 915,315 - DZA65_RS04385 0.69 +0.8 915,315 - DZA65_RS04385 0.69 -2.7 915,315 - DZA65_RS04385 0.69 +0.2 915,318 + DZA65_RS04385 0.69 -0.3 915,318 + DZA65_RS04385 0.69 +1.5 915,318 + DZA65_RS04385 0.69 +0.5 915,318 + DZA65_RS04385 0.69 -1.1 915,318 + DZA65_RS04385 0.69 +2.6 915,318 + DZA65_RS04385 0.69 -1.0 915,318 + DZA65_RS04385 0.69 -1.0 915,318 + DZA65_RS04385 0.69 -0.7 915,318 + DZA65_RS04385 0.69 -2.1 915,318 + DZA65_RS04385 0.69 -0.5 915,318 + DZA65_RS04385 0.69 +0.1 915,318 + DZA65_RS04385 0.69 +0.3 915,318 + DZA65_RS04385 0.69 -0.4 915,319 - DZA65_RS04385 0.69 -0.3 915,319 - DZA65_RS04385 0.69 -1.5 915,319 - DZA65_RS04385 0.69 +1.7 915,319 - DZA65_RS04385 0.69 -0.5 915,319 - DZA65_RS04385 0.69 +0.3 915,319 - DZA65_RS04385 0.69 -0.3 915,319 - DZA65_RS04385 0.69 -1.5 915,319 - DZA65_RS04385 0.69 -0.2 915,319 - DZA65_RS04385 0.69 -0.2 915,319 - DZA65_RS04385 0.69 -1.1 915,319 - DZA65_RS04385 0.69 -0.3 915,319 - DZA65_RS04385 0.69 -2.1 915,319 - DZA65_RS04385 0.69 +0.5 915,319 - DZA65_RS04385 0.69 +0.7 915,321 - DZA65_RS04385 0.69 -0.5 915,395 + DZA65_RS04385 0.75 -0.0 915,452 + DZA65_RS04385 0.80 +0.5 915,452 + DZA65_RS04385 0.80 -0.1 915,452 + DZA65_RS04385 0.80 -1.0 915,452 + DZA65_RS04385 0.80 -2.5 915,453 - DZA65_RS04385 0.80 -0.0 915,453 - DZA65_RS04385 0.80 +0.5 915,457 - +0.5 915,519 + DZA65_RS04385 0.85 +0.1 915,519 + DZA65_RS04385 0.85 +1.2 915,519 + DZA65_RS04385 0.85 -0.5 915,520 - DZA65_RS04385 0.85 -0.4 915,520 - DZA65_RS04385 0.85 +0.5 915,523 + DZA65_RS04385 0.85 -2.3 915,523 + DZA65_RS04385 0.85 -0.6 915,523 + DZA65_RS04385 0.85 +0.8 915,523 + DZA65_RS04385 0.85 +0.5 915,524 - DZA65_RS04385 0.85 -0.7 915,524 - DZA65_RS04385 0.85 +0.9 915,524 - DZA65_RS04385 0.85 -1.1 915,524 - DZA65_RS04385 0.85 -0.3 915,524 - DZA65_RS04385 0.85 +0.3 915,524 - DZA65_RS04385 0.85 +0.2 915,701 + -0.6 915,755 + -0.7 915,755 + +0.8 915,756 - +0.5 915,822 + DZA65_RS04390 0.24 +0.3 915,822 + DZA65_RS04390 0.24 -2.8 915,822 + DZA65_RS04390 0.24 +0.5 915,822 + DZA65_RS04390 0.24 -0.5 915,822 + DZA65_RS04390 0.24 -1.0 915,823 - DZA65_RS04390 0.24 -1.1 915,823 - DZA65_RS04390 0.24 +0.1 915,823 - DZA65_RS04390 0.24 +1.7 915,823 - DZA65_RS04390 0.24 -0.9 915,823 - DZA65_RS04390 0.24 -1.5 915,953 - DZA65_RS04390 0.70 -2.5 916,073 + +0.1 916,073 + +1.5 916,074 - +0.9 916,074 - +0.8 916,074 - -0.7 916,074 - +0.5 916,075 + -1.0 916,075 + -1.4 916,075 + -2.1 916,076 - -1.8 916,076 - -0.6 916,076 - +0.1 916,076 - +0.8 916,086 + -0.4 916,086 + +0.5 916,086 + -0.7 916,105 + +0.0 916,148 + +0.0 916,148 + -0.3 916,149 - -0.0 916,149 - -0.3 916,149 - -0.5 916,149 - -0.3 916,149 - -0.4 916,149 - -0.1 916,159 + -0.9 916,188 + -0.1 916,188 + -0.1 916,190 + -2.3 916,190 + -1.1 916,193 + +0.1 916,193 + -1.3 916,193 + -0.0 916,193 + -0.8 916,193 + -1.3 916,203 + -3.4 916,315 + -1.5 916,336 + -1.5 916,466 + -1.1
Or see this region's nucleotide sequence