Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03825 and DZA65_RS03835 are separated by 146 nucleotides DZA65_RS03835 and DZA65_RS03840 are separated by 14 nucleotides DZA65_RS03840 and DZA65_RS03845 are separated by 56 nucleotides
DZA65_RS03825: DZA65_RS03825 - DinI family protein, at 812,940 to 813,179
_RS03825
DZA65_RS03835: DZA65_RS03835 - VOC family protein, at 813,326 to 813,715
_RS03835
DZA65_RS03840: DZA65_RS03840 - hypothetical protein, at 813,730 to 814,014
_RS03840
DZA65_RS03845: DZA65_RS03845 - D-alanine--D-alanine ligase, at 814,071 to 815,171
_RS03845
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.793 kb on + strand at 812.833 kb on + strand at 812.834 kb on - strand at 812.941 kb on + strand at 812.973 kb on - strand, within DZA65_RS03825 at 812.973 kb on - strand, within DZA65_RS03825 at 813.008 kb on + strand, within DZA65_RS03825 at 813.008 kb on + strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.009 kb on - strand, within DZA65_RS03825 at 813.155 kb on + strand, within DZA65_RS03825 at 813.155 kb on + strand, within DZA65_RS03825 at 813.156 kb on - strand at 813.156 kb on - strand at 813.156 kb on - strand at 813.156 kb on - strand at 813.157 kb on - strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.171 kb on + strand at 813.172 kb on - strand at 813.172 kb on - strand at 813.172 kb on - strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.175 kb on + strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.176 kb on - strand at 813.215 kb on - strand at 813.249 kb on + strand at 813.277 kb on + strand at 813.277 kb on + strand at 813.278 kb on - strand at 813.278 kb on - strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.279 kb on + strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.280 kb on - strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.281 kb on + strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.282 kb on - strand at 813.303 kb on + strand at 813.331 kb on - strand at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.375 kb on + strand, within DZA65_RS03835 at 813.376 kb on - strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.377 kb on + strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.378 kb on - strand, within DZA65_RS03835 at 813.405 kb on + strand, within DZA65_RS03835 at 813.442 kb on + strand, within DZA65_RS03835 at 813.442 kb on + strand at 813.442 kb on + strand, within DZA65_RS03835 at 813.443 kb on - strand, within DZA65_RS03835 at 813.443 kb on - strand, within DZA65_RS03835 at 813.482 kb on - strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand at 813.493 kb on + strand, within DZA65_RS03835 at 813.493 kb on + strand, within DZA65_RS03835 at 813.494 kb on - strand, within DZA65_RS03835 at 813.494 kb on - strand, within DZA65_RS03835 at 813.531 kb on + strand, within DZA65_RS03835 at 813.531 kb on + strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.532 kb on - strand, within DZA65_RS03835 at 813.542 kb on + strand, within DZA65_RS03835 at 813.542 kb on + strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.543 kb on - strand, within DZA65_RS03835 at 813.588 kb on + strand, within DZA65_RS03835 at 813.588 kb on + strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.589 kb on - strand, within DZA65_RS03835 at 813.606 kb on + strand, within DZA65_RS03835 at 813.619 kb on + strand, within DZA65_RS03835 at 813.619 kb on + strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.620 kb on - strand, within DZA65_RS03835 at 813.711 kb on + strand at 813.714 kb on - strand at 813.733 kb on + strand at 813.735 kb on + strand at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.830 kb on + strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.831 kb on - strand, within DZA65_RS03840 at 813.949 kb on + strand, within DZA65_RS03840 at 813.949 kb on + strand, within DZA65_RS03840 at 813.950 kb on - strand, within DZA65_RS03840 at 813.950 kb on - strand, within DZA65_RS03840
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 812,793 + +0.5 812,833 + -2.8 812,834 - +0.8 812,941 + -0.8 812,973 - DZA65_RS03825 0.14 +0.3 812,973 - DZA65_RS03825 0.14 -0.9 813,008 + DZA65_RS03825 0.28 +0.4 813,008 + DZA65_RS03825 0.28 -0.3 813,009 - DZA65_RS03825 0.29 +0.4 813,009 - DZA65_RS03825 0.29 +0.7 813,009 - DZA65_RS03825 0.29 -0.9 813,009 - DZA65_RS03825 0.29 +0.1 813,155 + DZA65_RS03825 0.90 -0.6 813,155 + DZA65_RS03825 0.90 +0.5 813,156 - +0.1 813,156 - +0.4 813,156 - -0.2 813,156 - +2.1 813,157 - -1.0 813,171 + -0.5 813,171 + -1.3 813,171 + -0.9 813,171 + -0.5 813,172 - +0.5 813,172 - +0.9 813,172 - -0.7 813,175 + -1.3 813,175 + +2.1 813,175 + -0.1 813,175 + +0.1 813,175 + +0.5 813,176 - -0.5 813,176 - -0.8 813,176 - +0.8 813,176 - -1.6 813,176 - -0.5 813,176 - -0.1 813,176 - +0.4 813,176 - -1.1 813,215 - +1.5 813,249 + -0.1 813,277 + -0.5 813,277 + +0.5 813,278 - +0.9 813,278 - -0.2 813,279 + +0.9 813,279 + +0.1 813,279 + -1.1 813,279 + -0.7 813,279 + -0.9 813,279 + +1.4 813,279 + -1.0 813,279 + +0.5 813,279 + +0.7 813,279 + -0.3 813,279 + -2.3 813,279 + -2.5 813,279 + -0.2 813,279 + -0.5 813,279 + +0.2 813,279 + -1.8 813,279 + +0.2 813,279 + +1.1 813,279 + -0.2 813,279 + -2.3 813,280 - +1.1 813,280 - -0.6 813,280 - -0.5 813,280 - +0.8 813,280 - -0.2 813,280 - -0.8 813,280 - +0.3 813,280 - -0.8 813,280 - -1.1 813,280 - -2.1 813,280 - -0.7 813,280 - +1.3 813,280 - -1.1 813,280 - -0.9 813,280 - +0.8 813,280 - +0.2 813,280 - +0.6 813,280 - +1.5 813,280 - -1.1 813,280 - +0.3 813,280 - -0.6 813,280 - +0.1 813,280 - -1.8 813,281 + +1.9 813,281 + -2.3 813,281 + +1.3 813,281 + -3.1 813,281 + -1.3 813,281 + -1.7 813,281 + +0.5 813,281 + +0.6 813,281 + +0.5 813,281 + +0.5 813,281 + -2.1 813,281 + -1.8 813,281 + +0.5 813,281 + +1.0 813,281 + +0.7 813,281 + -1.6 813,281 + -2.6 813,281 + +2.6 813,282 - +1.2 813,282 - +2.3 813,282 - -0.5 813,282 - +0.0 813,282 - -0.1 813,282 - +0.6 813,282 - +1.6 813,282 - +0.1 813,282 - -0.4 813,282 - -0.1 813,282 - +0.4 813,282 - +0.7 813,282 - -0.5 813,282 - +0.3 813,303 + -0.3 813,331 - +0.5 813,375 + DZA65_RS03835 0.13 -0.1 813,375 + DZA65_RS03835 0.13 +1.1 813,375 + DZA65_RS03835 0.13 -0.5 813,375 + DZA65_RS03835 0.13 -0.4 813,376 - DZA65_RS03835 0.13 -0.2 813,377 + DZA65_RS03835 0.13 +0.7 813,377 + DZA65_RS03835 0.13 -1.1 813,377 + DZA65_RS03835 0.13 +1.3 813,377 + DZA65_RS03835 0.13 -0.5 813,377 + DZA65_RS03835 0.13 -0.4 813,377 + DZA65_RS03835 0.13 -0.9 813,377 + DZA65_RS03835 0.13 +0.1 813,377 + DZA65_RS03835 0.13 -0.1 813,377 + DZA65_RS03835 0.13 +1.3 813,377 + DZA65_RS03835 0.13 -2.3 813,377 + DZA65_RS03835 0.13 -0.1 813,378 - DZA65_RS03835 0.13 -0.2 813,378 - DZA65_RS03835 0.13 +2.0 813,378 - DZA65_RS03835 0.13 +0.1 813,378 - DZA65_RS03835 0.13 +0.5 813,378 - DZA65_RS03835 0.13 +0.8 813,378 - DZA65_RS03835 0.13 -0.0 813,378 - DZA65_RS03835 0.13 -0.3 813,378 - DZA65_RS03835 0.13 +1.3 813,378 - DZA65_RS03835 0.13 -0.9 813,378 - DZA65_RS03835 0.13 +1.7 813,378 - DZA65_RS03835 0.13 -1.7 813,378 - DZA65_RS03835 0.13 -0.1 813,378 - DZA65_RS03835 0.13 +0.3 813,378 - DZA65_RS03835 0.13 +1.0 813,378 - DZA65_RS03835 0.13 -1.5 813,405 + DZA65_RS03835 0.20 -0.1 813,442 + DZA65_RS03835 0.30 -0.3 813,442 + +0.5 813,442 + DZA65_RS03835 0.30 -1.3 813,443 - DZA65_RS03835 0.30 -0.2 813,443 - DZA65_RS03835 0.30 -1.2 813,482 - DZA65_RS03835 0.40 +0.1 813,493 + DZA65_RS03835 0.43 +0.5 813,493 + DZA65_RS03835 0.43 +0.5 813,493 + DZA65_RS03835 0.43 -0.5 813,493 + +2.1 813,493 + DZA65_RS03835 0.43 -0.7 813,493 + DZA65_RS03835 0.43 +0.6 813,494 - DZA65_RS03835 0.43 +0.5 813,494 - DZA65_RS03835 0.43 +0.9 813,531 + DZA65_RS03835 0.53 -2.3 813,531 + DZA65_RS03835 0.53 -0.1 813,532 - DZA65_RS03835 0.53 +1.8 813,532 - DZA65_RS03835 0.53 +0.6 813,532 - DZA65_RS03835 0.53 -0.4 813,532 - DZA65_RS03835 0.53 -1.5 813,542 + DZA65_RS03835 0.55 -0.9 813,542 + DZA65_RS03835 0.55 -0.9 813,543 - DZA65_RS03835 0.56 -1.4 813,543 - DZA65_RS03835 0.56 -0.3 813,543 - DZA65_RS03835 0.56 -1.1 813,543 - DZA65_RS03835 0.56 +0.4 813,588 + DZA65_RS03835 0.67 +1.1 813,588 + DZA65_RS03835 0.67 -2.5 813,589 - DZA65_RS03835 0.67 +0.2 813,589 - DZA65_RS03835 0.67 -1.4 813,589 - DZA65_RS03835 0.67 +0.7 813,606 + DZA65_RS03835 0.72 -0.6 813,619 + DZA65_RS03835 0.75 -0.8 813,619 + DZA65_RS03835 0.75 -1.6 813,620 - DZA65_RS03835 0.75 -0.1 813,620 - DZA65_RS03835 0.75 +0.7 813,620 - DZA65_RS03835 0.75 +0.2 813,620 - DZA65_RS03835 0.75 -0.5 813,620 - DZA65_RS03835 0.75 +1.8 813,711 + -0.1 813,714 - +0.1 813,733 + +1.5 813,735 + -0.5 813,830 + DZA65_RS03840 0.35 -1.5 813,830 + DZA65_RS03840 0.35 +1.5 813,830 + DZA65_RS03840 0.35 -0.9 813,830 + DZA65_RS03840 0.35 -0.1 813,830 + DZA65_RS03840 0.35 +0.8 813,830 + DZA65_RS03840 0.35 -0.3 813,830 + DZA65_RS03840 0.35 -0.4 813,831 - DZA65_RS03840 0.35 -0.1 813,831 - DZA65_RS03840 0.35 +0.2 813,831 - DZA65_RS03840 0.35 +0.1 813,831 - DZA65_RS03840 0.35 +1.2 813,831 - DZA65_RS03840 0.35 +0.5 813,831 - DZA65_RS03840 0.35 +0.0 813,831 - DZA65_RS03840 0.35 +2.7 813,831 - DZA65_RS03840 0.35 +1.4 813,949 + DZA65_RS03840 0.77 +1.4 813,949 + DZA65_RS03840 0.77 +0.3 813,950 - DZA65_RS03840 0.77 +0.0 813,950 - DZA65_RS03840 0.77 -0.5
Or see this region's nucleotide sequence