Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03770 and DZA65_RS03775 overlap by 4 nucleotides DZA65_RS03775 and DZA65_RS03780 are separated by 198 nucleotides
DZA65_RS03770: DZA65_RS03770 - HlyD family secretion protein, at 797,674 to 798,831
_RS03770
DZA65_RS03775: DZA65_RS03775 - MarR family transcriptional regulator, at 798,828 to 799,283
_RS03775
DZA65_RS03780: DZA65_RS03780 - PLP-dependent aminotransferase family protein, at 799,482 to 800,966
_RS03780
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 797.928 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand at 798.363 kb on + strand, within DZA65_RS03770 at 798.364 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.565 kb on + strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.774 kb on + strand at 798.775 kb on - strand at 798.790 kb on + strand at 798.790 kb on + strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.826 kb on - strand at 798.826 kb on - strand at 798.899 kb on + strand, within DZA65_RS03775 at 798.900 kb on - strand, within DZA65_RS03775 at 798.966 kb on + strand, within DZA65_RS03775 at 798.967 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand at 799.183 kb on + strand, within DZA65_RS03775 at 799.300 kb on + strand at 799.300 kb on + strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.389 kb on + strand at 799.389 kb on + strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.407 kb on - strand at 799.407 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.447 kb on - strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.497 kb on + strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.574 kb on + strand at 799.574 kb on + strand at 799.575 kb on - strand at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.804 kb on + strand, within DZA65_RS03780 at 799.869 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.929 kb on + strand, within DZA65_RS03780 at 799.930 kb on - strand, within DZA65_RS03780 at 799.950 kb on + strand, within DZA65_RS03780 at 799.951 kb on - strand, within DZA65_RS03780 at 799.951 kb on - strand, within DZA65_RS03780 at 799.965 kb on + strand, within DZA65_RS03780 at 799.985 kb on + strand, within DZA65_RS03780 at 799.985 kb on + strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 799.986 kb on - strand, within DZA65_RS03780 at 800.002 kb on + strand, within DZA65_RS03780 at 800.003 kb on - strand, within DZA65_RS03780 at 800.003 kb on - strand, within DZA65_RS03780 at 800.077 kb on + strand, within DZA65_RS03780 at 800.077 kb on + strand, within DZA65_RS03780 at 800.121 kb on + strand, within DZA65_RS03780 at 800.121 kb on + strand, within DZA65_RS03780 at 800.122 kb on - strand, within DZA65_RS03780 at 800.149 kb on - strand, within DZA65_RS03780 at 800.168 kb on - strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.188 kb on + strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.189 kb on - strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.210 kb on + strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.211 kb on - strand, within DZA65_RS03780 at 800.251 kb on - strand, within DZA65_RS03780 at 800.263 kb on - strand at 800.263 kb on - strand, within DZA65_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 797,928 + DZA65_RS03770 0.22 +1.6 798,041 + DZA65_RS03770 0.32 -1.1 798,041 + DZA65_RS03770 0.32 -1.1 798,041 + DZA65_RS03770 0.32 +0.3 798,041 + DZA65_RS03770 0.32 -0.4 798,042 - DZA65_RS03770 0.32 -0.6 798,042 - DZA65_RS03770 0.32 -0.9 798,042 - -0.1 798,363 + DZA65_RS03770 0.59 +0.2 798,364 - DZA65_RS03770 0.60 +1.7 798,492 - DZA65_RS03770 0.71 -0.9 798,492 - DZA65_RS03770 0.71 +1.8 798,565 + DZA65_RS03770 0.77 +1.2 798,566 - DZA65_RS03770 0.77 -0.5 798,566 - DZA65_RS03770 0.77 +0.5 798,774 + -1.6 798,775 - +1.4 798,790 + -1.3 798,790 + +0.5 798,791 - +1.1 798,791 - +0.8 798,791 - +0.9 798,826 - +0.9 798,826 - -0.1 798,899 + DZA65_RS03775 0.16 +0.0 798,900 - DZA65_RS03775 0.16 +0.5 798,966 + DZA65_RS03775 0.30 -1.0 798,967 - DZA65_RS03775 0.30 -0.7 799,167 - DZA65_RS03775 0.74 -1.6 799,167 - +3.1 799,183 + DZA65_RS03775 0.78 +0.5 799,300 + -1.1 799,300 + -1.4 799,301 - +0.3 799,301 - -0.7 799,301 - -1.5 799,301 - -0.5 799,389 + -2.7 799,389 + -0.1 799,390 - -1.8 799,390 - -0.2 799,390 - +1.8 799,406 + -2.8 799,406 + +0.2 799,406 + +0.4 799,406 + +0.5 799,406 + -1.1 799,407 - -0.7 799,407 - +0.3 799,419 - +1.2 799,419 - +1.6 799,419 - +0.7 799,419 - -0.5 799,446 + -0.3 799,446 + -0.2 799,446 + +0.1 799,446 + +0.2 799,447 - +0.1 799,487 + -0.2 799,487 + +0.8 799,487 + -0.3 799,487 + -1.5 799,487 + +0.4 799,487 + +1.3 799,488 - -1.9 799,488 - +1.1 799,488 - -1.2 799,488 - -0.1 799,488 - -1.1 799,488 - -2.9 799,488 - +0.8 799,488 - -0.2 799,488 - -1.9 799,497 + +0.1 799,498 - -0.5 799,498 - -1.3 799,498 - -0.7 799,542 - +2.2 799,542 - -0.1 799,542 - -0.3 799,574 + -0.3 799,574 + +0.0 799,575 - +0.8 799,644 + DZA65_RS03780 0.11 +0.0 799,644 + DZA65_RS03780 0.11 -0.1 799,644 + DZA65_RS03780 0.11 -1.1 799,645 - DZA65_RS03780 0.11 -0.1 799,645 - DZA65_RS03780 0.11 -0.4 799,645 - DZA65_RS03780 0.11 -2.1 799,645 - DZA65_RS03780 0.11 -1.8 799,683 - DZA65_RS03780 0.14 -0.5 799,683 - DZA65_RS03780 0.14 +0.8 799,711 - DZA65_RS03780 0.15 -0.6 799,711 - DZA65_RS03780 0.15 -1.1 799,804 + DZA65_RS03780 0.22 -2.1 799,869 + DZA65_RS03780 0.26 -2.1 799,929 + DZA65_RS03780 0.30 -0.8 799,929 + DZA65_RS03780 0.30 +0.1 799,929 + DZA65_RS03780 0.30 +0.5 799,930 - DZA65_RS03780 0.30 +1.3 799,950 + DZA65_RS03780 0.32 +0.2 799,951 - DZA65_RS03780 0.32 -0.5 799,951 - DZA65_RS03780 0.32 +0.5 799,965 + DZA65_RS03780 0.33 -1.8 799,985 + DZA65_RS03780 0.34 -1.2 799,985 + DZA65_RS03780 0.34 +0.3 799,986 - DZA65_RS03780 0.34 +1.6 799,986 - DZA65_RS03780 0.34 +0.5 799,986 - DZA65_RS03780 0.34 -0.8 800,002 + DZA65_RS03780 0.35 +0.4 800,003 - DZA65_RS03780 0.35 -1.8 800,003 - DZA65_RS03780 0.35 -0.7 800,077 + DZA65_RS03780 0.40 +0.3 800,077 + DZA65_RS03780 0.40 -0.3 800,121 + DZA65_RS03780 0.43 -3.2 800,121 + DZA65_RS03780 0.43 +2.0 800,122 - DZA65_RS03780 0.43 +0.4 800,149 - DZA65_RS03780 0.45 -0.7 800,168 - DZA65_RS03780 0.46 -0.5 800,188 + DZA65_RS03780 0.48 +1.2 800,188 + DZA65_RS03780 0.48 +0.5 800,188 + DZA65_RS03780 0.48 -1.1 800,188 + DZA65_RS03780 0.48 -0.5 800,188 + DZA65_RS03780 0.48 +0.7 800,188 + DZA65_RS03780 0.48 +1.0 800,188 + DZA65_RS03780 0.48 -0.5 800,188 + DZA65_RS03780 0.48 -0.3 800,188 + DZA65_RS03780 0.48 -0.3 800,188 + DZA65_RS03780 0.48 -1.5 800,188 + DZA65_RS03780 0.48 -1.7 800,189 - DZA65_RS03780 0.48 -2.3 800,189 - DZA65_RS03780 0.48 -1.1 800,189 - DZA65_RS03780 0.48 +0.2 800,189 - DZA65_RS03780 0.48 -1.1 800,189 - DZA65_RS03780 0.48 -0.8 800,189 - DZA65_RS03780 0.48 -0.5 800,189 - DZA65_RS03780 0.48 +1.5 800,189 - DZA65_RS03780 0.48 -0.6 800,189 - DZA65_RS03780 0.48 -0.4 800,189 - DZA65_RS03780 0.48 +0.1 800,189 - DZA65_RS03780 0.48 -0.7 800,189 - DZA65_RS03780 0.48 +0.1 800,189 - DZA65_RS03780 0.48 +0.3 800,210 + DZA65_RS03780 0.49 +0.4 800,210 + DZA65_RS03780 0.49 +0.4 800,210 + DZA65_RS03780 0.49 +0.1 800,210 + DZA65_RS03780 0.49 +0.0 800,211 - DZA65_RS03780 0.49 -0.5 800,211 - DZA65_RS03780 0.49 -1.8 800,211 - DZA65_RS03780 0.49 +0.0 800,211 - DZA65_RS03780 0.49 -3.4 800,211 - DZA65_RS03780 0.49 -1.1 800,211 - DZA65_RS03780 0.49 -1.8 800,211 - DZA65_RS03780 0.49 -0.9 800,211 - DZA65_RS03780 0.49 +0.7 800,211 - DZA65_RS03780 0.49 +1.1 800,251 - DZA65_RS03780 0.52 -0.1 800,263 - +2.1 800,263 - DZA65_RS03780 0.53 -0.2
Or see this region's nucleotide sequence