Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03435 and DZA65_RS03440 are separated by 31 nucleotides DZA65_RS03440 and DZA65_RS03445 are separated by 131 nucleotides
DZA65_RS03435: DZA65_RS03435 - glycine cleavage system aminomethyltransferase GcvT, at 725,469 to 726,569
_RS03435
DZA65_RS03440: DZA65_RS03440 - glycine cleavage system protein GcvH, at 726,601 to 727,008
_RS03440
DZA65_RS03445: DZA65_RS03445 - aminomethyl-transferring glycine dehydrogenase, at 727,140 to 730,013
_RS03445
Position (kb) 726
727
728 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 725.670 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.721 kb on + strand, within DZA65_RS03435 at 725.724 kb on - strand, within DZA65_RS03435 at 725.755 kb on + strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.756 kb on - strand, within DZA65_RS03435 at 725.772 kb on + strand, within DZA65_RS03435 at 725.773 kb on - strand, within DZA65_RS03435 at 725.773 kb on - strand, within DZA65_RS03435 at 725.790 kb on + strand, within DZA65_RS03435 at 725.790 kb on + strand, within DZA65_RS03435 at 725.791 kb on - strand, within DZA65_RS03435 at 725.791 kb on - strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.864 kb on + strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 725.865 kb on - strand, within DZA65_RS03435 at 726.033 kb on + strand, within DZA65_RS03435 at 726.033 kb on + strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.034 kb on - strand, within DZA65_RS03435 at 726.035 kb on + strand, within DZA65_RS03435 at 726.035 kb on + strand, within DZA65_RS03435 at 726.036 kb on - strand, within DZA65_RS03435 at 726.174 kb on + strand, within DZA65_RS03435 at 726.175 kb on - strand, within DZA65_RS03435 at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.482 kb on + strand at 726.483 kb on - strand at 726.483 kb on - strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.628 kb on + strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.629 kb on - strand at 726.630 kb on + strand at 726.630 kb on + strand at 726.630 kb on + strand at 726.631 kb on - strand at 726.673 kb on + strand, within DZA65_RS03440 at 726.674 kb on - strand, within DZA65_RS03440 at 726.674 kb on - strand, within DZA65_RS03440 at 726.727 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.812 kb on - strand, within DZA65_RS03440 at 726.889 kb on + strand, within DZA65_RS03440 at 726.889 kb on + strand, within DZA65_RS03440 at 726.890 kb on - strand, within DZA65_RS03440 at 727.006 kb on + strand at 727.006 kb on + strand at 727.007 kb on - strand at 727.007 kb on - strand at 727.007 kb on - strand at 727.046 kb on + strand at 727.046 kb on + strand at 727.046 kb on + strand at 727.047 kb on - strand at 727.047 kb on - strand at 727.047 kb on - strand at 727.118 kb on + strand at 727.119 kb on - strand at 727.119 kb on - strand at 727.119 kb on - strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.389 kb on + strand at 727.390 kb on - strand at 727.464 kb on + strand, within DZA65_RS03445 at 727.464 kb on + strand, within DZA65_RS03445 at 727.465 kb on - strand, within DZA65_RS03445 at 727.465 kb on - strand, within DZA65_RS03445 at 727.473 kb on + strand, within DZA65_RS03445 at 727.474 kb on - strand, within DZA65_RS03445 at 727.474 kb on - strand, within DZA65_RS03445 at 727.475 kb on + strand, within DZA65_RS03445 at 727.476 kb on - strand at 727.476 kb on - strand, within DZA65_RS03445 at 727.476 kb on - strand, within DZA65_RS03445 at 727.764 kb on + strand, within DZA65_RS03445 at 727.764 kb on + strand, within DZA65_RS03445 at 727.765 kb on - strand, within DZA65_RS03445 at 727.765 kb on - strand, within DZA65_RS03445 at 727.765 kb on - strand, within DZA65_RS03445 at 727.765 kb on - strand, within DZA65_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 725,670 + DZA65_RS03435 0.18 -1.3 725,721 + DZA65_RS03435 0.23 -0.8 725,721 + DZA65_RS03435 0.23 +0.0 725,721 + DZA65_RS03435 0.23 +0.8 725,721 + DZA65_RS03435 0.23 +0.4 725,724 - DZA65_RS03435 0.23 -1.0 725,755 + DZA65_RS03435 0.26 -1.2 725,756 - DZA65_RS03435 0.26 -1.2 725,756 - DZA65_RS03435 0.26 -1.0 725,756 - DZA65_RS03435 0.26 +0.6 725,756 - DZA65_RS03435 0.26 -0.4 725,772 + DZA65_RS03435 0.28 +0.8 725,773 - DZA65_RS03435 0.28 +0.6 725,773 - DZA65_RS03435 0.28 -1.7 725,790 + DZA65_RS03435 0.29 +1.8 725,790 + DZA65_RS03435 0.29 +1.6 725,791 - DZA65_RS03435 0.29 -0.2 725,791 - DZA65_RS03435 0.29 -1.6 725,864 + DZA65_RS03435 0.36 -0.3 725,864 + DZA65_RS03435 0.36 +2.3 725,864 + DZA65_RS03435 0.36 -0.3 725,864 + DZA65_RS03435 0.36 -0.4 725,865 - DZA65_RS03435 0.36 +0.2 725,865 - DZA65_RS03435 0.36 -0.3 725,865 - DZA65_RS03435 0.36 +0.6 726,033 + DZA65_RS03435 0.51 -2.4 726,033 + DZA65_RS03435 0.51 -0.4 726,034 - DZA65_RS03435 0.51 -0.7 726,034 - DZA65_RS03435 0.51 +1.9 726,034 - DZA65_RS03435 0.51 +0.7 726,034 - DZA65_RS03435 0.51 -0.2 726,034 - DZA65_RS03435 0.51 -0.8 726,035 + DZA65_RS03435 0.51 +0.8 726,035 + DZA65_RS03435 0.51 -0.0 726,036 - DZA65_RS03435 0.51 -1.8 726,174 + DZA65_RS03435 0.64 +0.1 726,175 - DZA65_RS03435 0.64 -1.8 726,482 + -0.6 726,482 + -1.6 726,482 + +1.3 726,482 + +3.6 726,482 + +0.2 726,483 - -0.0 726,483 - +2.5 726,628 + -0.4 726,628 + -0.2 726,628 + -1.4 726,628 + +0.8 726,628 + +0.3 726,628 + -1.8 726,628 + -0.4 726,628 + -0.2 726,628 + +1.9 726,628 + -0.1 726,628 + -1.2 726,628 + +1.2 726,628 + -0.8 726,629 - +2.6 726,629 - -1.4 726,629 - +0.1 726,629 - +0.6 726,629 - +0.1 726,629 - -0.0 726,629 - -1.4 726,629 - +0.4 726,630 + +0.4 726,630 + -2.0 726,630 + -1.0 726,631 - -0.7 726,673 + DZA65_RS03440 0.18 -0.1 726,674 - DZA65_RS03440 0.18 -1.2 726,674 - DZA65_RS03440 0.18 -0.4 726,727 - DZA65_RS03440 0.31 -0.3 726,812 - DZA65_RS03440 0.52 -0.1 726,812 - DZA65_RS03440 0.52 +0.1 726,812 - DZA65_RS03440 0.52 +0.6 726,812 - DZA65_RS03440 0.52 -0.3 726,812 - DZA65_RS03440 0.52 -0.0 726,812 - DZA65_RS03440 0.52 +1.0 726,812 - DZA65_RS03440 0.52 +0.1 726,812 - DZA65_RS03440 0.52 -1.0 726,812 - DZA65_RS03440 0.52 -1.0 726,889 + DZA65_RS03440 0.71 -0.5 726,889 + DZA65_RS03440 0.71 -0.8 726,890 - DZA65_RS03440 0.71 -1.3 727,006 + -1.6 727,006 + -1.4 727,007 - +0.3 727,007 - +0.6 727,007 - +1.6 727,046 + +0.4 727,046 + +0.8 727,046 + +0.2 727,047 - +1.0 727,047 - +1.6 727,047 - -1.1 727,118 + -0.0 727,119 - -0.7 727,119 - -0.1 727,119 - -0.8 727,389 + +0.2 727,389 + -0.4 727,389 + +1.6 727,389 + -2.3 727,390 - +0.2 727,464 + DZA65_RS03445 0.11 +0.6 727,464 + DZA65_RS03445 0.11 +1.5 727,465 - DZA65_RS03445 0.11 +2.6 727,465 - DZA65_RS03445 0.11 +0.0 727,473 + DZA65_RS03445 0.12 +0.3 727,474 - DZA65_RS03445 0.12 +0.4 727,474 - DZA65_RS03445 0.12 +0.6 727,475 + DZA65_RS03445 0.12 -0.2 727,476 - +1.6 727,476 - DZA65_RS03445 0.12 -1.2 727,476 - DZA65_RS03445 0.12 -1.4 727,764 + DZA65_RS03445 0.22 +1.1 727,764 + DZA65_RS03445 0.22 -0.9 727,765 - DZA65_RS03445 0.22 +0.8 727,765 - DZA65_RS03445 0.22 -0.2 727,765 - DZA65_RS03445 0.22 -0.9 727,765 - DZA65_RS03445 0.22 -1.0
Or see this region's nucleotide sequence