Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03295 and DZA65_RS03300 overlap by 14 nucleotides DZA65_RS03300 and DZA65_RS03305 are separated by 425 nucleotides DZA65_RS03305 and DZA65_RS03310 are separated by 62 nucleotides
DZA65_RS03295: DZA65_RS03295 - N-acetyltransferase, at 698,739 to 699,242
_RS03295
DZA65_RS03300: DZA65_RS03300 - GIY-YIG nuclease family protein, at 699,229 to 699,531
_RS03300
DZA65_RS03305: DZA65_RS03305 - deoxyribose-phosphate aldolase, at 699,957 to 700,736
_RS03305
DZA65_RS03310: DZA65_RS03310 - thymidine phosphorylase, at 700,799 to 702,130
_RS03310
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.018 kb on + strand, within DZA65_RS03295 at 699.019 kb on - strand, within DZA65_RS03295 at 699.019 kb on - strand, within DZA65_RS03295 at 699.019 kb on - strand, within DZA65_RS03295 at 699.019 kb on - strand, within DZA65_RS03295 at 699.019 kb on - strand, within DZA65_RS03295 at 699.064 kb on + strand, within DZA65_RS03295 at 699.084 kb on + strand, within DZA65_RS03295 at 699.084 kb on + strand, within DZA65_RS03295 at 699.084 kb on + strand, within DZA65_RS03295 at 699.084 kb on + strand, within DZA65_RS03295 at 699.085 kb on - strand, within DZA65_RS03295 at 699.085 kb on - strand, within DZA65_RS03295 at 699.088 kb on - strand, within DZA65_RS03295 at 699.088 kb on - strand, within DZA65_RS03295 at 699.088 kb on - strand, within DZA65_RS03295 at 699.088 kb on - strand, within DZA65_RS03295 at 699.129 kb on + strand, within DZA65_RS03295 at 699.129 kb on + strand, within DZA65_RS03295 at 699.130 kb on - strand, within DZA65_RS03295 at 699.130 kb on - strand, within DZA65_RS03295 at 699.130 kb on - strand, within DZA65_RS03295 at 699.168 kb on + strand, within DZA65_RS03295 at 699.326 kb on + strand, within DZA65_RS03300 at 699.327 kb on - strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.371 kb on + strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.372 kb on - strand, within DZA65_RS03300 at 699.470 kb on + strand, within DZA65_RS03300 at 699.470 kb on + strand, within DZA65_RS03300 at 699.470 kb on + strand, within DZA65_RS03300 at 699.471 kb on - strand, within DZA65_RS03300 at 699.471 kb on - strand, within DZA65_RS03300 at 699.501 kb on - strand at 699.561 kb on - strand at 699.565 kb on + strand at 699.565 kb on + strand at 699.565 kb on + strand at 699.566 kb on - strand at 699.573 kb on + strand at 699.573 kb on + strand at 699.574 kb on - strand at 699.574 kb on - strand at 699.641 kb on + strand at 699.646 kb on - strand at 699.695 kb on - strand at 699.712 kb on + strand at 699.723 kb on + strand at 699.727 kb on + strand at 699.783 kb on - strand at 699.783 kb on - strand at 699.820 kb on + strand at 699.821 kb on - strand at 699.830 kb on + strand at 699.830 kb on + strand at 699.831 kb on - strand at 699.831 kb on - strand at 699.840 kb on + strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.841 kb on - strand at 699.848 kb on + strand at 699.848 kb on + strand at 699.862 kb on + strand at 699.871 kb on - strand at 699.871 kb on - strand at 699.890 kb on + strand at 699.890 kb on + strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.891 kb on - strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.906 kb on + strand at 699.907 kb on - strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.912 kb on + strand at 699.913 kb on - strand at 699.913 kb on - strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.956 kb on + strand at 699.957 kb on - strand at 699.957 kb on - strand at 699.957 kb on - strand at 699.967 kb on + strand at 699.967 kb on + strand at 699.968 kb on - strand at 699.968 kb on - strand at 700.006 kb on + strand at 700.006 kb on + strand at 700.065 kb on - strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.097 kb on + strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.098 kb on - strand, within DZA65_RS03305 at 700.101 kb on + strand, within DZA65_RS03305 at 700.242 kb on + strand, within DZA65_RS03305 at 700.242 kb on + strand, within DZA65_RS03305 at 700.243 kb on - strand, within DZA65_RS03305 at 700.556 kb on + strand, within DZA65_RS03305 at 700.599 kb on + strand, within DZA65_RS03305 at 700.619 kb on + strand, within DZA65_RS03305 at 700.620 kb on - strand, within DZA65_RS03305 at 700.774 kb on + strand at 700.774 kb on + strand at 700.774 kb on + strand at 700.781 kb on + strand at 700.781 kb on + strand at 700.781 kb on + strand at 700.782 kb on - strand at 700.820 kb on - strand at 700.948 kb on + strand, within DZA65_RS03310 at 700.948 kb on + strand, within DZA65_RS03310 at 701.121 kb on - strand, within DZA65_RS03310 at 701.300 kb on + strand, within DZA65_RS03310 at 701.300 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.408 kb on - strand, within DZA65_RS03310 at 701.428 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.486 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 699,018 + DZA65_RS03295 0.55 -0.2 699,018 + +2.2 699,018 + DZA65_RS03295 0.55 -1.2 699,018 + DZA65_RS03295 0.55 +1.3 699,018 + DZA65_RS03295 0.55 +0.4 699,018 + DZA65_RS03295 0.55 +0.2 699,018 + DZA65_RS03295 0.55 +0.7 699,018 + DZA65_RS03295 0.55 +0.4 699,018 + DZA65_RS03295 0.55 -2.9 699,018 + DZA65_RS03295 0.55 +3.5 699,018 + DZA65_RS03295 0.55 +0.4 699,018 + DZA65_RS03295 0.55 -0.8 699,018 + DZA65_RS03295 0.55 -0.3 699,018 + DZA65_RS03295 0.55 +1.7 699,018 + DZA65_RS03295 0.55 +1.2 699,018 + DZA65_RS03295 0.55 +0.1 699,019 - DZA65_RS03295 0.56 -1.4 699,019 - DZA65_RS03295 0.56 -0.4 699,019 - DZA65_RS03295 0.56 +0.9 699,019 - DZA65_RS03295 0.56 -0.1 699,019 - DZA65_RS03295 0.56 -0.1 699,064 + DZA65_RS03295 0.64 +1.6 699,084 + DZA65_RS03295 0.68 +0.4 699,084 + DZA65_RS03295 0.68 +1.9 699,084 + DZA65_RS03295 0.68 +1.7 699,084 + DZA65_RS03295 0.68 +0.8 699,085 - DZA65_RS03295 0.69 +1.2 699,085 - DZA65_RS03295 0.69 +1.2 699,088 - DZA65_RS03295 0.69 +0.6 699,088 - DZA65_RS03295 0.69 +0.4 699,088 - DZA65_RS03295 0.69 -0.1 699,088 - DZA65_RS03295 0.69 +0.8 699,129 + DZA65_RS03295 0.77 +1.6 699,129 + DZA65_RS03295 0.77 -0.1 699,130 - DZA65_RS03295 0.78 +2.7 699,130 - DZA65_RS03295 0.78 -1.4 699,130 - DZA65_RS03295 0.78 +0.3 699,168 + DZA65_RS03295 0.85 +2.2 699,326 + DZA65_RS03300 0.32 +0.4 699,327 - DZA65_RS03300 0.32 -0.7 699,371 + DZA65_RS03300 0.47 -0.1 699,371 + DZA65_RS03300 0.47 +0.6 699,371 + DZA65_RS03300 0.47 -1.6 699,371 + DZA65_RS03300 0.47 +0.9 699,371 + DZA65_RS03300 0.47 -1.2 699,371 + DZA65_RS03300 0.47 -0.8 699,371 + DZA65_RS03300 0.47 +0.6 699,371 + DZA65_RS03300 0.47 -0.0 699,372 - DZA65_RS03300 0.47 +0.2 699,372 - DZA65_RS03300 0.47 -0.8 699,372 - DZA65_RS03300 0.47 +0.3 699,372 - DZA65_RS03300 0.47 +0.6 699,372 - DZA65_RS03300 0.47 +0.9 699,372 - DZA65_RS03300 0.47 -0.8 699,470 + DZA65_RS03300 0.80 -0.7 699,470 + DZA65_RS03300 0.80 +0.1 699,470 + DZA65_RS03300 0.80 +0.1 699,471 - DZA65_RS03300 0.80 -0.7 699,471 - DZA65_RS03300 0.80 -0.2 699,501 - +0.1 699,561 - -0.4 699,565 + +1.2 699,565 + +0.6 699,565 + +1.2 699,566 - -0.9 699,573 + +0.6 699,573 + -1.4 699,574 - +0.7 699,574 - -0.4 699,641 + -0.4 699,646 - -0.4 699,695 - -2.6 699,712 + -0.4 699,723 + +0.2 699,727 + -1.4 699,783 - -1.4 699,783 - +0.6 699,820 + -1.2 699,821 - +0.2 699,830 + -0.8 699,830 + +0.2 699,831 - -0.3 699,831 - -0.9 699,840 + -0.6 699,841 - -0.1 699,841 - -1.1 699,841 - -1.0 699,841 - -1.8 699,841 - +1.2 699,848 + +0.1 699,848 + +0.4 699,862 + -1.8 699,871 - -0.6 699,871 - -0.1 699,890 + -0.6 699,890 + +1.3 699,891 - -0.9 699,891 - -0.4 699,891 - +1.6 699,891 - -1.4 699,906 + +0.6 699,906 + -2.3 699,906 + -1.9 699,906 + -0.3 699,907 - +0.6 699,912 + -0.0 699,912 + -0.8 699,912 + -0.1 699,912 + +0.4 699,913 - +1.4 699,913 - -1.0 699,956 + -0.6 699,956 + +1.6 699,956 + -2.6 699,956 + -0.8 699,956 + +0.2 699,957 - -0.6 699,957 - -0.9 699,957 - -2.6 699,967 + -0.6 699,967 + -2.2 699,968 - -0.2 699,968 - +0.7 700,006 + -0.3 700,006 + -1.4 700,065 - DZA65_RS03305 0.14 +0.1 700,097 + DZA65_RS03305 0.18 -0.4 700,097 + DZA65_RS03305 0.18 -0.9 700,097 + DZA65_RS03305 0.18 +0.4 700,098 - DZA65_RS03305 0.18 -1.2 700,098 - DZA65_RS03305 0.18 +0.6 700,098 - DZA65_RS03305 0.18 +2.0 700,098 - DZA65_RS03305 0.18 -1.6 700,098 - DZA65_RS03305 0.18 +1.0 700,098 - DZA65_RS03305 0.18 -1.2 700,098 - DZA65_RS03305 0.18 +1.1 700,098 - DZA65_RS03305 0.18 +0.6 700,101 + DZA65_RS03305 0.18 +0.6 700,242 + DZA65_RS03305 0.37 +0.1 700,242 + DZA65_RS03305 0.37 -2.6 700,243 - DZA65_RS03305 0.37 +2.6 700,556 + DZA65_RS03305 0.77 +1.6 700,599 + DZA65_RS03305 0.82 -0.8 700,619 + DZA65_RS03305 0.85 +0.7 700,620 - DZA65_RS03305 0.85 -1.8 700,774 + +1.4 700,774 + +0.2 700,774 + +0.2 700,781 + +0.6 700,781 + +0.4 700,781 + -0.0 700,782 - +0.4 700,820 - +0.7 700,948 + DZA65_RS03310 0.11 +0.0 700,948 + DZA65_RS03310 0.11 +0.4 701,121 - DZA65_RS03310 0.24 -0.0 701,300 + DZA65_RS03310 0.38 -0.4 701,300 + DZA65_RS03310 0.38 -0.3 701,407 + DZA65_RS03310 0.46 -1.1 701,407 + DZA65_RS03310 0.46 +0.2 701,408 - DZA65_RS03310 0.46 -0.0 701,428 + DZA65_RS03310 0.47 -0.2 701,438 + DZA65_RS03310 0.48 +0.9 701,438 + DZA65_RS03310 0.48 -0.2 701,438 + DZA65_RS03310 0.48 -1.2 701,438 + DZA65_RS03310 0.48 +1.6 701,438 + DZA65_RS03310 0.48 +0.8 701,438 + DZA65_RS03310 0.48 +0.8 701,438 + DZA65_RS03310 0.48 -1.0 701,438 + DZA65_RS03310 0.48 +0.6 701,438 + DZA65_RS03310 0.48 +0.4 701,439 - DZA65_RS03310 0.48 +0.4 701,439 - DZA65_RS03310 0.48 -0.4 701,439 - DZA65_RS03310 0.48 +0.8 701,439 - DZA65_RS03310 0.48 +1.7 701,485 + DZA65_RS03310 0.52 +1.7 701,485 + DZA65_RS03310 0.52 +0.6 701,486 - DZA65_RS03310 0.52 -1.4 701,734 - DZA65_RS03310 0.70 -2.2 701,734 - DZA65_RS03310 0.70 +1.3 701,734 - DZA65_RS03310 0.70 +0.9 701,734 - DZA65_RS03310 0.70 -1.6
Or see this region's nucleotide sequence