Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22800 and DZA65_RS02800 are separated by 490 nucleotides DZA65_RS02800 and DZA65_RS02805 are separated by 104 nucleotides DZA65_RS02805 and DZA65_RS02810 are separated by 120 nucleotides
DZA65_RS22800: DZA65_RS22800 - hypothetical protein, at 602,617 to 603,207
_RS22800
DZA65_RS02800: DZA65_RS02800 - helix-turn-helix transcriptional regulator, at 603,698 to 603,964
_RS02800
DZA65_RS02805: DZA65_RS02805 - helix-turn-helix transcriptional regulator, at 604,069 to 604,329
_RS02805
DZA65_RS02810: DZA65_RS02810 - transcriptional regulator, at 604,450 to 604,671
_RS02810
Position (kb) 603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 602.719 kb on - strand, within DZA65_RS22800 at 602.776 kb on - strand, within DZA65_RS22800 at 602.790 kb on + strand, within DZA65_RS22800 at 602.790 kb on + strand, within DZA65_RS22800 at 602.791 kb on - strand, within DZA65_RS22800 at 602.791 kb on - strand, within DZA65_RS22800 at 602.793 kb on - strand, within DZA65_RS22800 at 602.793 kb on - strand, within DZA65_RS22800 at 602.930 kb on + strand, within DZA65_RS22800 at 602.930 kb on + strand, within DZA65_RS22800 at 602.935 kb on + strand, within DZA65_RS22800 at 602.940 kb on + strand, within DZA65_RS22800 at 602.953 kb on - strand, within DZA65_RS22800 at 603.146 kb on + strand, within DZA65_RS22800 at 603.147 kb on - strand, within DZA65_RS22800 at 603.166 kb on + strand at 603.185 kb on - strand at 603.245 kb on - strand at 603.247 kb on + strand at 603.288 kb on + strand at 603.293 kb on - strand at 603.367 kb on + strand at 603.394 kb on + strand at 603.395 kb on - strand at 603.395 kb on - strand at 603.442 kb on + strand at 603.450 kb on - strand at 603.506 kb on - strand at 603.527 kb on - strand at 603.527 kb on - strand at 603.616 kb on - strand at 603.636 kb on + strand at 603.637 kb on - strand at 603.686 kb on - strand at 603.687 kb on + strand at 603.688 kb on - strand at 603.770 kb on - strand, within DZA65_RS02800 at 603.772 kb on - strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.860 kb on + strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.932 kb on + strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.964 kb on + strand at 603.964 kb on + strand at 603.964 kb on + strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.986 kb on - strand at 603.992 kb on - strand at 604.006 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.056 kb on + strand at 604.056 kb on + strand at 604.057 kb on - strand at 604.094 kb on + strand at 604.094 kb on + strand at 604.095 kb on - strand, within DZA65_RS02805 at 604.129 kb on + strand, within DZA65_RS02805 at 604.130 kb on - strand, within DZA65_RS02805 at 604.137 kb on - strand, within DZA65_RS02805 at 604.142 kb on + strand, within DZA65_RS02805 at 604.143 kb on - strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.159 kb on - strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.205 kb on - strand, within DZA65_RS02805 at 604.217 kb on + strand, within DZA65_RS02805 at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.334 kb on + strand at 604.335 kb on - strand at 604.335 kb on - strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.351 kb on + strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.352 kb on - strand at 604.361 kb on + strand at 604.362 kb on - strand at 604.378 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.418 kb on + strand at 604.419 kb on - strand at 604.419 kb on - strand at 604.429 kb on + strand at 604.430 kb on - strand at 604.436 kb on + strand at 604.437 kb on - strand at 604.479 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.584 kb on + strand, within DZA65_RS02810 at 604.674 kb on + strand at 604.675 kb on - strand at 604.751 kb on - strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.797 kb on + strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.798 kb on - strand at 604.800 kb on + strand at 604.800 kb on + strand at 604.801 kb on - strand at 604.825 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.850 kb on + strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.851 kb on - strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.865 kb on + strand at 604.937 kb on - strand at 604.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 602,719 - DZA65_RS22800 0.17 -0.7 602,776 - DZA65_RS22800 0.27 +3.1 602,790 + DZA65_RS22800 0.29 +0.5 602,790 + DZA65_RS22800 0.29 +0.6 602,791 - DZA65_RS22800 0.29 -1.3 602,791 - DZA65_RS22800 0.29 +1.8 602,793 - DZA65_RS22800 0.30 -0.7 602,793 - DZA65_RS22800 0.30 -0.5 602,930 + DZA65_RS22800 0.53 -0.9 602,930 + DZA65_RS22800 0.53 +0.1 602,935 + DZA65_RS22800 0.54 +1.2 602,940 + DZA65_RS22800 0.55 +0.0 602,953 - DZA65_RS22800 0.57 -0.7 603,146 + DZA65_RS22800 0.90 -1.4 603,147 - DZA65_RS22800 0.90 +0.5 603,166 + -0.2 603,185 - -0.2 603,245 - -1.0 603,247 + +0.6 603,288 + -1.6 603,293 - -0.6 603,367 + -0.1 603,394 + -2.6 603,395 - +0.8 603,395 - +0.0 603,442 + +0.9 603,450 - -0.4 603,506 - +0.6 603,527 - -0.3 603,527 - -1.2 603,616 - +0.3 603,636 + -0.6 603,637 - -0.5 603,686 - -0.1 603,687 + +1.0 603,688 - -2.6 603,770 - DZA65_RS02800 0.27 +2.2 603,772 - DZA65_RS02800 0.28 +0.2 603,793 + DZA65_RS02800 0.36 -2.0 603,793 + DZA65_RS02800 0.36 +0.0 603,839 + DZA65_RS02800 0.53 +0.4 603,839 + DZA65_RS02800 0.53 -1.6 603,840 - DZA65_RS02800 0.53 -0.6 603,840 - DZA65_RS02800 0.53 +0.1 603,860 + DZA65_RS02800 0.61 +0.1 603,900 - DZA65_RS02800 0.76 +2.0 603,900 - DZA65_RS02800 0.76 -2.0 603,932 + DZA65_RS02800 0.88 +0.4 603,933 - DZA65_RS02800 0.88 -0.4 603,933 - DZA65_RS02800 0.88 -1.4 603,933 - DZA65_RS02800 0.88 -2.0 603,964 + -0.5 603,964 + -1.7 603,964 + -1.0 603,965 - +1.2 603,965 - +0.9 603,965 - -1.2 603,965 - -3.2 603,965 - -0.4 603,986 - +0.6 603,992 - -0.5 604,006 + +0.0 604,011 + -0.2 604,011 + +0.6 604,011 + +0.6 604,011 + +0.6 604,011 + -0.4 604,012 - -0.9 604,012 - -1.9 604,056 + +0.5 604,056 + +1.1 604,057 - -1.6 604,094 + +0.9 604,094 + -0.3 604,095 - DZA65_RS02805 0.10 -0.9 604,129 + DZA65_RS02805 0.23 +1.9 604,130 - DZA65_RS02805 0.23 +4.2 604,137 - DZA65_RS02805 0.26 -2.0 604,142 + DZA65_RS02805 0.28 -0.4 604,143 - DZA65_RS02805 0.28 +3.7 604,158 + DZA65_RS02805 0.34 +0.9 604,158 + DZA65_RS02805 0.34 -2.2 604,159 - DZA65_RS02805 0.34 +5.0 604,204 + DZA65_RS02805 0.52 -0.4 604,204 + DZA65_RS02805 0.52 -1.7 604,204 + DZA65_RS02805 0.52 +0.5 604,204 + DZA65_RS02805 0.52 +0.2 604,204 + +1.2 604,204 + DZA65_RS02805 0.52 -0.1 604,204 + DZA65_RS02805 0.52 +2.2 604,204 + DZA65_RS02805 0.52 -0.1 604,205 - DZA65_RS02805 0.52 +4.2 604,217 + DZA65_RS02805 0.57 -1.4 604,334 + -0.1 604,334 + -1.1 604,334 + +0.6 604,334 + -0.4 604,335 - -1.7 604,335 - -0.8 604,351 + +0.0 604,351 + +0.8 604,351 + -1.4 604,351 + -0.9 604,351 + -0.4 604,351 + +1.2 604,351 + -2.6 604,352 - +0.1 604,352 - +0.4 604,352 - -0.7 604,352 - +0.2 604,352 - -0.7 604,352 - +0.6 604,361 + +0.1 604,362 - +1.6 604,378 + -1.0 604,418 + +0.2 604,418 + -0.4 604,418 + -0.8 604,419 - -0.2 604,419 - -0.1 604,429 + +0.6 604,430 - -1.2 604,436 + +1.8 604,437 - +1.3 604,479 + DZA65_RS02810 0.13 -2.9 604,584 + DZA65_RS02810 0.60 +0.6 604,584 + DZA65_RS02810 0.60 +0.1 604,674 + -0.1 604,675 - +0.1 604,751 - -1.6 604,797 + -0.5 604,797 + -0.6 604,797 + -0.1 604,797 + -0.9 604,798 - -0.2 604,798 - -0.8 604,798 - -0.4 604,798 - -1.4 604,798 - -0.9 604,800 + +1.5 604,800 + -0.2 604,801 - -0.1 604,825 + -0.1 604,850 + -1.9 604,850 + -0.1 604,850 + -2.7 604,851 - -2.4 604,851 - -1.2 604,851 - +0.4 604,851 - +0.6 604,851 - -0.3 604,851 - +2.2 604,851 - +0.6 604,851 - -1.3 604,865 + -1.4 604,865 + +0.6 604,865 + +0.0 604,865 + -0.1 604,937 - -0.7 604,937 - +0.8
Or see this region's nucleotide sequence