Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02485 and DZA65_RS02490 are separated by 128 nucleotides DZA65_RS02490 and DZA65_RS02495 are separated by 129 nucleotides DZA65_RS02495 and DZA65_RS02500 are separated by 15 nucleotides
DZA65_RS02485: DZA65_RS02485 - DNA repair protein RadA, at 534,297 to 535,682
_RS02485
DZA65_RS02490: DZA65_RS02490 - phosphoserine phosphatase, at 535,811 to 536,788
_RS02490
DZA65_RS02495: DZA65_RS02495 - YtjB family periplasmic protein, at 536,918 to 537,598
_RS02495
DZA65_RS02500: DZA65_RS02500 - trans-aconitate 2-methyltransferase, at 537,614 to 538,258
_RS02500
Position (kb) 535
536
537 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 534.874 kb on - strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.972 kb on - strand, within DZA65_RS02485 at 534.972 kb on - strand at 535.072 kb on + strand, within DZA65_RS02485 at 535.073 kb on - strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.301 kb on - strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.572 kb on + strand at 535.572 kb on + strand at 535.572 kb on + strand at 535.573 kb on - strand at 535.649 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.723 kb on + strand at 535.739 kb on + strand at 535.740 kb on - strand at 535.755 kb on + strand at 535.755 kb on + strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.771 kb on + strand at 535.771 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.921 kb on - strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.161 kb on - strand, within DZA65_RS02490 at 536.407 kb on + strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.566 kb on - strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.689 kb on - strand, within DZA65_RS02490 at 536.701 kb on + strand at 536.702 kb on - strand at 536.702 kb on - strand at 536.755 kb on + strand at 536.767 kb on + strand at 536.769 kb on + strand at 536.769 kb on + strand at 536.769 kb on + strand at 536.769 kb on + strand at 536.769 kb on + strand at 536.770 kb on - strand at 536.770 kb on - strand at 536.770 kb on - strand at 536.770 kb on - strand at 536.770 kb on - strand at 536.770 kb on - strand at 536.793 kb on + strand at 536.794 kb on - strand at 536.794 kb on - strand at 536.794 kb on - strand at 536.794 kb on - strand at 536.797 kb on + strand at 536.798 kb on - strand at 536.798 kb on - strand at 536.798 kb on - strand at 536.860 kb on + strand at 536.860 kb on + strand at 536.860 kb on + strand at 536.860 kb on + strand at 536.860 kb on + strand at 536.861 kb on - strand at 536.861 kb on - strand at 536.861 kb on - strand at 536.861 kb on - strand at 536.894 kb on + strand at 536.894 kb on + strand at 536.911 kb on + strand at 536.911 kb on + strand at 536.911 kb on + strand at 536.911 kb on + strand at 536.911 kb on + strand at 536.912 kb on - strand at 536.912 kb on - strand at 536.946 kb on + strand at 536.947 kb on - strand at 536.947 kb on - strand at 536.947 kb on - strand at 536.953 kb on + strand at 536.954 kb on - strand at 536.997 kb on + strand, within DZA65_RS02495 at 536.997 kb on + strand, within DZA65_RS02495 at 537.012 kb on - strand, within DZA65_RS02495 at 537.192 kb on + strand, within DZA65_RS02495 at 537.192 kb on + strand, within DZA65_RS02495 at 537.192 kb on + strand, within DZA65_RS02495 at 537.192 kb on + strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.193 kb on - strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.194 kb on + strand, within DZA65_RS02495 at 537.195 kb on - strand, within DZA65_RS02495 at 537.285 kb on - strand, within DZA65_RS02495 at 537.319 kb on + strand, within DZA65_RS02495 at 537.320 kb on - strand, within DZA65_RS02495 at 537.320 kb on - strand, within DZA65_RS02495 at 537.320 kb on - strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.349 kb on + strand, within DZA65_RS02495 at 537.350 kb on - strand, within DZA65_RS02495 at 537.359 kb on - strand, within DZA65_RS02495 at 537.390 kb on + strand, within DZA65_RS02495 at 537.390 kb on + strand, within DZA65_RS02495 at 537.391 kb on - strand, within DZA65_RS02495 at 537.391 kb on - strand, within DZA65_RS02495 at 537.448 kb on + strand, within DZA65_RS02495 at 537.449 kb on - strand, within DZA65_RS02495 at 537.449 kb on - strand at 537.449 kb on - strand, within DZA65_RS02495 at 537.503 kb on + strand, within DZA65_RS02495 at 537.503 kb on + strand, within DZA65_RS02495 at 537.504 kb on - strand, within DZA65_RS02495 at 537.504 kb on - strand, within DZA65_RS02495 at 537.504 kb on - strand, within DZA65_RS02495 at 537.580 kb on + strand at 537.580 kb on + strand at 537.581 kb on - strand at 537.581 kb on - strand at 537.581 kb on - strand at 537.581 kb on - strand at 537.607 kb on + strand at 537.608 kb on - strand at 537.638 kb on - strand at 537.638 kb on - strand at 537.711 kb on + strand, within DZA65_RS02500 at 537.711 kb on + strand, within DZA65_RS02500 at 537.712 kb on - strand, within DZA65_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 534,874 - DZA65_RS02485 0.42 +0.5 534,971 + DZA65_RS02485 0.49 -1.0 534,971 + DZA65_RS02485 0.49 -1.1 534,971 + DZA65_RS02485 0.49 +1.0 534,972 - DZA65_RS02485 0.49 -0.9 534,972 - -0.4 535,072 + DZA65_RS02485 0.56 +0.3 535,073 - DZA65_RS02485 0.56 -0.8 535,229 + DZA65_RS02485 0.67 -2.0 535,229 + DZA65_RS02485 0.67 +0.1 535,230 - DZA65_RS02485 0.67 -0.1 535,230 - DZA65_RS02485 0.67 -1.7 535,230 - DZA65_RS02485 0.67 -0.8 535,300 + DZA65_RS02485 0.72 +0.0 535,300 + DZA65_RS02485 0.72 +0.3 535,301 - DZA65_RS02485 0.72 -0.4 535,347 + DZA65_RS02485 0.76 -0.1 535,347 + DZA65_RS02485 0.76 -1.1 535,348 - DZA65_RS02485 0.76 -0.7 535,348 - DZA65_RS02485 0.76 -0.4 535,572 + -0.6 535,572 + +0.5 535,572 + +0.6 535,573 - -0.4 535,649 + +0.1 535,687 + -2.0 535,687 + +0.2 535,687 + +0.5 535,687 + -2.7 535,687 + -2.2 535,687 + -0.1 535,688 - -1.2 535,688 - -1.7 535,688 - +0.4 535,698 + +0.2 535,698 + +0.4 535,698 + +0.3 535,707 + +1.3 535,707 + -1.0 535,707 + +3.8 535,707 + +0.2 535,707 + -1.0 535,708 - -1.3 535,708 - -0.4 535,708 - -1.7 535,710 + -0.7 535,710 + -0.7 535,710 + -1.0 535,711 - -0.4 535,711 - -0.2 535,711 - +0.9 535,711 - -1.4 535,711 - -0.7 535,711 - -0.1 535,723 + -0.2 535,739 + +1.2 535,740 - -1.5 535,755 + -2.1 535,755 + -0.4 535,756 - +1.4 535,756 - -0.4 535,756 - +1.4 535,756 - -2.2 535,758 + +1.2 535,758 + +0.6 535,758 + -2.7 535,758 + -1.1 535,758 + +2.9 535,759 - -0.5 535,759 - +1.0 535,759 - -0.8 535,759 - +0.6 535,759 - +0.3 535,759 - +0.5 535,759 - +0.4 535,759 - +0.1 535,759 - +0.9 535,759 - +0.4 535,771 + -0.4 535,771 + +0.1 535,774 + +2.6 535,774 + -1.4 535,774 + +0.6 535,774 + -0.6 535,774 + +0.0 535,774 + +0.0 535,774 + +0.2 535,774 + +0.3 535,775 - -0.3 535,775 - -1.7 535,775 - -0.4 535,775 - +0.4 535,775 - +0.4 535,775 - +0.8 535,775 - +1.6 535,775 - -1.5 535,775 - +0.7 535,775 - -0.1 535,775 - -1.8 535,921 - DZA65_RS02490 0.11 -2.0 536,041 + DZA65_RS02490 0.24 -1.7 536,041 + DZA65_RS02490 0.24 -4.1 536,042 - DZA65_RS02490 0.24 -0.4 536,042 - DZA65_RS02490 0.24 -3.8 536,043 + DZA65_RS02490 0.24 -2.4 536,043 + DZA65_RS02490 0.24 -2.0 536,043 + DZA65_RS02490 0.24 -2.4 536,044 - DZA65_RS02490 0.24 -1.5 536,044 - DZA65_RS02490 0.24 -1.0 536,044 - DZA65_RS02490 0.24 -3.1 536,044 - DZA65_RS02490 0.24 -2.7 536,160 + DZA65_RS02490 0.36 -2.3 536,160 + DZA65_RS02490 0.36 +1.2 536,161 - DZA65_RS02490 0.36 -1.0 536,407 + DZA65_RS02490 0.61 -1.4 536,408 - DZA65_RS02490 0.61 -2.2 536,408 - DZA65_RS02490 0.61 -1.7 536,408 - DZA65_RS02490 0.61 -1.8 536,408 - DZA65_RS02490 0.61 -2.4 536,481 + DZA65_RS02490 0.69 -1.7 536,481 + DZA65_RS02490 0.69 -2.8 536,482 - DZA65_RS02490 0.69 -2.0 536,482 - DZA65_RS02490 0.69 -2.0 536,482 - DZA65_RS02490 0.69 +0.8 536,566 - DZA65_RS02490 0.77 -3.1 536,637 + DZA65_RS02490 0.84 -2.5 536,637 + DZA65_RS02490 0.84 -1.1 536,637 + DZA65_RS02490 0.84 -1.5 536,637 + DZA65_RS02490 0.84 -2.4 536,637 + DZA65_RS02490 0.84 -1.4 536,637 + DZA65_RS02490 0.84 +0.7 536,638 - DZA65_RS02490 0.85 -2.0 536,638 - DZA65_RS02490 0.85 -1.4 536,638 - DZA65_RS02490 0.85 -2.0 536,638 - DZA65_RS02490 0.85 -1.7 536,638 - DZA65_RS02490 0.85 -1.2 536,638 - DZA65_RS02490 0.85 -0.4 536,638 - DZA65_RS02490 0.85 -2.7 536,638 - DZA65_RS02490 0.85 -0.1 536,638 - DZA65_RS02490 0.85 -0.4 536,658 + DZA65_RS02490 0.87 -1.7 536,658 + DZA65_RS02490 0.87 -1.7 536,659 - DZA65_RS02490 0.87 -2.2 536,659 - DZA65_RS02490 0.87 -0.4 536,659 - DZA65_RS02490 0.87 -4.2 536,659 - DZA65_RS02490 0.87 -2.4 536,659 - DZA65_RS02490 0.87 -2.5 536,659 - DZA65_RS02490 0.87 -3.8 536,689 - DZA65_RS02490 0.90 -1.4 536,701 + -1.7 536,702 - -0.7 536,702 - -1.7 536,755 + -1.7 536,767 + -4.2 536,769 + -0.1 536,769 + -2.5 536,769 + -3.1 536,769 + -0.7 536,769 + +1.8 536,770 - -1.4 536,770 - +1.0 536,770 - -1.0 536,770 - -0.2 536,770 - +0.4 536,770 - -0.2 536,793 + -3.0 536,794 - -0.8 536,794 - -1.0 536,794 - -1.4 536,794 - -1.5 536,797 + -0.1 536,798 - +1.7 536,798 - -1.5 536,798 - -0.5 536,860 + -0.8 536,860 + +0.5 536,860 + -0.2 536,860 + +0.6 536,860 + -1.8 536,861 - -1.0 536,861 - -0.0 536,861 - -0.3 536,861 - -1.5 536,894 + +1.6 536,894 + -1.2 536,911 + -0.2 536,911 + +0.6 536,911 + +0.6 536,911 + -0.3 536,911 + -0.4 536,912 - +1.1 536,912 - +1.4 536,946 + -0.6 536,947 - -0.0 536,947 - +0.5 536,947 - +0.4 536,953 + +0.5 536,954 - +0.1 536,997 + DZA65_RS02495 0.12 -0.6 536,997 + DZA65_RS02495 0.12 +0.9 537,012 - DZA65_RS02495 0.14 +0.9 537,192 + DZA65_RS02495 0.40 +0.6 537,192 + DZA65_RS02495 0.40 +0.0 537,192 + DZA65_RS02495 0.40 +0.9 537,192 + DZA65_RS02495 0.40 -1.5 537,193 - DZA65_RS02495 0.40 -0.1 537,193 - DZA65_RS02495 0.40 +1.1 537,193 - DZA65_RS02495 0.40 -1.0 537,193 - DZA65_RS02495 0.40 -1.2 537,193 - DZA65_RS02495 0.40 +0.9 537,193 - DZA65_RS02495 0.40 -0.2 537,194 + DZA65_RS02495 0.41 -1.8 537,194 + DZA65_RS02495 0.41 +2.1 537,194 + DZA65_RS02495 0.41 -0.1 537,194 + DZA65_RS02495 0.41 -0.1 537,194 + DZA65_RS02495 0.41 -3.2 537,194 + DZA65_RS02495 0.41 -0.3 537,195 - DZA65_RS02495 0.41 +0.8 537,285 - DZA65_RS02495 0.54 -1.4 537,319 + DZA65_RS02495 0.59 -1.0 537,320 - DZA65_RS02495 0.59 -0.6 537,320 - DZA65_RS02495 0.59 +1.0 537,320 - DZA65_RS02495 0.59 -1.2 537,349 + DZA65_RS02495 0.63 +0.8 537,349 + DZA65_RS02495 0.63 +0.9 537,349 + DZA65_RS02495 0.63 +0.6 537,349 + DZA65_RS02495 0.63 +1.3 537,349 + DZA65_RS02495 0.63 +0.0 537,349 + DZA65_RS02495 0.63 +1.2 537,350 - DZA65_RS02495 0.63 +0.2 537,359 - DZA65_RS02495 0.65 -1.1 537,390 + DZA65_RS02495 0.69 -0.6 537,390 + DZA65_RS02495 0.69 -0.7 537,391 - DZA65_RS02495 0.69 -0.3 537,391 - DZA65_RS02495 0.69 +0.2 537,448 + DZA65_RS02495 0.78 +0.6 537,449 - DZA65_RS02495 0.78 +0.8 537,449 - +0.0 537,449 - DZA65_RS02495 0.78 +0.4 537,503 + DZA65_RS02495 0.86 +0.2 537,503 + DZA65_RS02495 0.86 -0.0 537,504 - DZA65_RS02495 0.86 +0.0 537,504 - DZA65_RS02495 0.86 +0.9 537,504 - DZA65_RS02495 0.86 +0.2 537,580 + -0.2 537,580 + -1.7 537,581 - -2.0 537,581 - +0.2 537,581 - -2.1 537,581 - +1.6 537,607 + -0.5 537,608 - -0.4 537,638 - +0.2 537,638 - -1.7 537,711 + DZA65_RS02500 0.15 +2.7 537,711 + DZA65_RS02500 0.15 -1.0 537,712 - DZA65_RS02500 0.15 +0.3
Or see this region's nucleotide sequence