Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02480 and DZA65_RS02485 are separated by 71 nucleotides DZA65_RS02485 and DZA65_RS02490 are separated by 128 nucleotides
DZA65_RS02480: DZA65_RS02480 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 532,969 to 534,225
_RS02480
DZA65_RS02485: DZA65_RS02485 - DNA repair protein RadA, at 534,297 to 535,682
_RS02485
DZA65_RS02490: DZA65_RS02490 - phosphoserine phosphatase, at 535,811 to 536,788
_RS02490
Position (kb) 534
535
536 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 533.426 kb on + strand at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.426 kb on + strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.427 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.439 kb on - strand, within DZA65_RS02480 at 533.467 kb on - strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.562 kb on + strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.563 kb on - strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.564 kb on + strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.565 kb on - strand, within DZA65_RS02480 at 533.574 kb on - strand, within DZA65_RS02480 at 533.616 kb on + strand at 533.616 kb on + strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.617 kb on - strand, within DZA65_RS02480 at 533.669 kb on + strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.670 kb on - strand, within DZA65_RS02480 at 533.699 kb on + strand, within DZA65_RS02480 at 533.700 kb on - strand, within DZA65_RS02480 at 533.829 kb on - strand, within DZA65_RS02480 at 533.905 kb on + strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.906 kb on - strand, within DZA65_RS02480 at 533.953 kb on + strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.954 kb on - strand, within DZA65_RS02480 at 533.981 kb on + strand, within DZA65_RS02480 at 533.981 kb on + strand, within DZA65_RS02480 at 533.982 kb on - strand, within DZA65_RS02480 at 533.982 kb on - strand, within DZA65_RS02480 at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.130 kb on + strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.131 kb on - strand at 534.134 kb on + strand at 534.148 kb on - strand at 534.209 kb on + strand at 534.209 kb on + strand at 534.209 kb on + strand at 534.210 kb on - strand at 534.215 kb on + strand at 534.215 kb on + strand at 534.215 kb on + strand at 534.216 kb on - strand at 534.233 kb on + strand at 534.234 kb on - strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.263 kb on + strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.266 kb on + strand at 534.266 kb on + strand at 534.266 kb on + strand at 534.267 kb on - strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.281 kb on + strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.282 kb on - strand at 534.298 kb on + strand at 534.298 kb on + strand at 534.381 kb on - strand at 534.381 kb on - strand at 534.663 kb on - strand, within DZA65_RS02485 at 534.874 kb on - strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.971 kb on + strand, within DZA65_RS02485 at 534.972 kb on - strand, within DZA65_RS02485 at 534.972 kb on - strand at 535.072 kb on + strand, within DZA65_RS02485 at 535.073 kb on - strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.229 kb on + strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.230 kb on - strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.300 kb on + strand, within DZA65_RS02485 at 535.301 kb on - strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.347 kb on + strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.348 kb on - strand, within DZA65_RS02485 at 535.572 kb on + strand at 535.572 kb on + strand at 535.572 kb on + strand at 535.573 kb on - strand at 535.649 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.687 kb on + strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.688 kb on - strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.698 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.707 kb on + strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.708 kb on - strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.710 kb on + strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.711 kb on - strand at 535.723 kb on + strand at 535.739 kb on + strand at 535.740 kb on - strand at 535.755 kb on + strand at 535.755 kb on + strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.756 kb on - strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.758 kb on + strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.759 kb on - strand at 535.771 kb on + strand at 535.771 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.774 kb on + strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.775 kb on - strand at 535.921 kb on - strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.041 kb on + strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.042 kb on - strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.043 kb on + strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.044 kb on - strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.160 kb on + strand, within DZA65_RS02490 at 536.161 kb on - strand, within DZA65_RS02490 at 536.407 kb on + strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.408 kb on - strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.481 kb on + strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.482 kb on - strand, within DZA65_RS02490 at 536.566 kb on - strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.637 kb on + strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.638 kb on - strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.658 kb on + strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490 at 536.659 kb on - strand, within DZA65_RS02490
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 533,426 + +0.0 533,426 + DZA65_RS02480 0.36 -1.2 533,426 + DZA65_RS02480 0.36 +0.8 533,426 + DZA65_RS02480 0.36 +0.3 533,426 + DZA65_RS02480 0.36 -0.6 533,426 + DZA65_RS02480 0.36 +1.1 533,427 - DZA65_RS02480 0.36 +0.4 533,427 - DZA65_RS02480 0.36 -1.5 533,427 - DZA65_RS02480 0.36 +0.2 533,427 - DZA65_RS02480 0.36 -0.7 533,439 - DZA65_RS02480 0.37 -0.2 533,439 - DZA65_RS02480 0.37 -0.2 533,467 - DZA65_RS02480 0.40 +0.4 533,562 + DZA65_RS02480 0.47 -0.6 533,562 + DZA65_RS02480 0.47 +0.0 533,562 + DZA65_RS02480 0.47 +0.0 533,562 + DZA65_RS02480 0.47 -0.6 533,562 + DZA65_RS02480 0.47 +1.2 533,562 + DZA65_RS02480 0.47 +0.1 533,562 + DZA65_RS02480 0.47 -2.0 533,562 + DZA65_RS02480 0.47 +0.0 533,562 + DZA65_RS02480 0.47 -0.4 533,563 - DZA65_RS02480 0.47 +0.6 533,563 - +0.6 533,563 - DZA65_RS02480 0.47 +0.4 533,563 - DZA65_RS02480 0.47 +1.8 533,563 - DZA65_RS02480 0.47 -0.4 533,563 - DZA65_RS02480 0.47 +0.1 533,563 - DZA65_RS02480 0.47 -0.2 533,563 - DZA65_RS02480 0.47 +0.3 533,563 - DZA65_RS02480 0.47 -0.9 533,563 - DZA65_RS02480 0.47 -0.9 533,564 + DZA65_RS02480 0.47 -1.2 533,564 + DZA65_RS02480 0.47 +0.3 533,564 + DZA65_RS02480 0.47 +0.2 533,564 + DZA65_RS02480 0.47 -0.8 533,564 + DZA65_RS02480 0.47 +0.5 533,564 + DZA65_RS02480 0.47 -1.7 533,565 - DZA65_RS02480 0.47 -1.2 533,565 - DZA65_RS02480 0.47 -0.1 533,565 - DZA65_RS02480 0.47 -3.0 533,565 - DZA65_RS02480 0.47 -0.6 533,565 - DZA65_RS02480 0.47 -0.7 533,565 - DZA65_RS02480 0.47 +2.4 533,565 - DZA65_RS02480 0.47 +1.6 533,565 - DZA65_RS02480 0.47 -0.2 533,574 - DZA65_RS02480 0.48 +1.2 533,616 + -1.0 533,616 + DZA65_RS02480 0.51 -0.5 533,617 - DZA65_RS02480 0.52 +0.6 533,617 - DZA65_RS02480 0.52 +1.8 533,617 - DZA65_RS02480 0.52 -0.1 533,669 + DZA65_RS02480 0.56 +1.6 533,670 - DZA65_RS02480 0.56 +0.2 533,670 - DZA65_RS02480 0.56 -0.2 533,670 - DZA65_RS02480 0.56 +0.6 533,670 - DZA65_RS02480 0.56 -0.0 533,699 + DZA65_RS02480 0.58 -0.0 533,700 - DZA65_RS02480 0.58 -1.0 533,829 - DZA65_RS02480 0.68 +0.0 533,905 + DZA65_RS02480 0.74 +0.4 533,906 - DZA65_RS02480 0.75 -2.8 533,906 - DZA65_RS02480 0.75 -1.0 533,953 + DZA65_RS02480 0.78 +0.6 533,954 - DZA65_RS02480 0.78 -1.4 533,954 - DZA65_RS02480 0.78 -0.5 533,981 + DZA65_RS02480 0.81 +1.6 533,981 + DZA65_RS02480 0.81 -2.2 533,982 - DZA65_RS02480 0.81 -0.0 533,982 - DZA65_RS02480 0.81 +0.4 534,130 + -1.7 534,130 + +2.1 534,130 + +0.1 534,130 + +0.1 534,130 + +0.5 534,130 + -0.7 534,131 - +0.2 534,131 - +1.0 534,131 - +1.6 534,131 - -3.3 534,134 + -0.6 534,148 - +1.9 534,209 + -1.0 534,209 + -1.7 534,209 + +0.2 534,210 - -1.8 534,215 + -1.2 534,215 + -2.4 534,215 + -1.0 534,216 - +0.8 534,233 + -2.2 534,234 - +0.9 534,263 + -0.2 534,263 + +0.9 534,263 + -1.2 534,263 + +0.7 534,263 + -1.2 534,263 + +0.6 534,264 - -2.0 534,264 - +0.1 534,264 - +0.0 534,264 - +0.6 534,264 - +1.2 534,264 - +0.3 534,264 - +0.9 534,266 + +0.5 534,266 + -2.1 534,266 + -1.4 534,267 - -0.1 534,281 + +0.4 534,281 + -2.0 534,281 + -2.2 534,281 + +1.1 534,281 + -0.2 534,281 + +1.2 534,281 + -3.2 534,282 - -0.2 534,282 - -0.4 534,282 - -0.7 534,282 - -0.2 534,282 - -0.4 534,282 - -0.2 534,298 + +0.2 534,298 + +1.0 534,381 - +0.9 534,381 - -1.4 534,663 - DZA65_RS02485 0.26 +0.6 534,874 - DZA65_RS02485 0.42 +0.5 534,971 + DZA65_RS02485 0.49 -1.0 534,971 + DZA65_RS02485 0.49 -1.1 534,971 + DZA65_RS02485 0.49 +1.0 534,972 - DZA65_RS02485 0.49 -0.9 534,972 - -0.4 535,072 + DZA65_RS02485 0.56 +0.3 535,073 - DZA65_RS02485 0.56 -0.8 535,229 + DZA65_RS02485 0.67 -2.0 535,229 + DZA65_RS02485 0.67 +0.1 535,230 - DZA65_RS02485 0.67 -0.1 535,230 - DZA65_RS02485 0.67 -1.7 535,230 - DZA65_RS02485 0.67 -0.8 535,300 + DZA65_RS02485 0.72 +0.0 535,300 + DZA65_RS02485 0.72 +0.3 535,301 - DZA65_RS02485 0.72 -0.4 535,347 + DZA65_RS02485 0.76 -0.1 535,347 + DZA65_RS02485 0.76 -1.1 535,348 - DZA65_RS02485 0.76 -0.7 535,348 - DZA65_RS02485 0.76 -0.4 535,572 + -0.6 535,572 + +0.5 535,572 + +0.6 535,573 - -0.4 535,649 + +0.1 535,687 + -2.0 535,687 + +0.2 535,687 + +0.5 535,687 + -2.7 535,687 + -2.2 535,687 + -0.1 535,688 - -1.2 535,688 - -1.7 535,688 - +0.4 535,698 + +0.2 535,698 + +0.4 535,698 + +0.3 535,707 + +1.3 535,707 + -1.0 535,707 + +3.8 535,707 + +0.2 535,707 + -1.0 535,708 - -1.3 535,708 - -0.4 535,708 - -1.7 535,710 + -0.7 535,710 + -0.7 535,710 + -1.0 535,711 - -0.4 535,711 - -0.2 535,711 - +0.9 535,711 - -1.4 535,711 - -0.7 535,711 - -0.1 535,723 + -0.2 535,739 + +1.2 535,740 - -1.5 535,755 + -2.1 535,755 + -0.4 535,756 - +1.4 535,756 - -0.4 535,756 - +1.4 535,756 - -2.2 535,758 + +1.2 535,758 + +0.6 535,758 + -2.7 535,758 + -1.1 535,758 + +2.9 535,759 - -0.5 535,759 - +1.0 535,759 - -0.8 535,759 - +0.6 535,759 - +0.3 535,759 - +0.5 535,759 - +0.4 535,759 - +0.1 535,759 - +0.9 535,759 - +0.4 535,771 + -0.4 535,771 + +0.1 535,774 + +2.6 535,774 + -1.4 535,774 + +0.6 535,774 + -0.6 535,774 + +0.0 535,774 + +0.0 535,774 + +0.2 535,774 + +0.3 535,775 - -0.3 535,775 - -1.7 535,775 - -0.4 535,775 - +0.4 535,775 - +0.4 535,775 - +0.8 535,775 - +1.6 535,775 - -1.5 535,775 - +0.7 535,775 - -0.1 535,775 - -1.8 535,921 - DZA65_RS02490 0.11 -2.0 536,041 + DZA65_RS02490 0.24 -1.7 536,041 + DZA65_RS02490 0.24 -4.1 536,042 - DZA65_RS02490 0.24 -0.4 536,042 - DZA65_RS02490 0.24 -3.8 536,043 + DZA65_RS02490 0.24 -2.4 536,043 + DZA65_RS02490 0.24 -2.0 536,043 + DZA65_RS02490 0.24 -2.4 536,044 - DZA65_RS02490 0.24 -1.5 536,044 - DZA65_RS02490 0.24 -1.0 536,044 - DZA65_RS02490 0.24 -3.1 536,044 - DZA65_RS02490 0.24 -2.7 536,160 + DZA65_RS02490 0.36 -2.3 536,160 + DZA65_RS02490 0.36 +1.2 536,161 - DZA65_RS02490 0.36 -1.0 536,407 + DZA65_RS02490 0.61 -1.4 536,408 - DZA65_RS02490 0.61 -2.2 536,408 - DZA65_RS02490 0.61 -1.7 536,408 - DZA65_RS02490 0.61 -1.8 536,408 - DZA65_RS02490 0.61 -2.4 536,481 + DZA65_RS02490 0.69 -1.7 536,481 + DZA65_RS02490 0.69 -2.8 536,482 - DZA65_RS02490 0.69 -2.0 536,482 - DZA65_RS02490 0.69 -2.0 536,482 - DZA65_RS02490 0.69 +0.8 536,566 - DZA65_RS02490 0.77 -3.1 536,637 + DZA65_RS02490 0.84 -2.5 536,637 + DZA65_RS02490 0.84 -1.1 536,637 + DZA65_RS02490 0.84 -1.5 536,637 + DZA65_RS02490 0.84 -2.4 536,637 + DZA65_RS02490 0.84 -1.4 536,637 + DZA65_RS02490 0.84 +0.7 536,638 - DZA65_RS02490 0.85 -2.0 536,638 - DZA65_RS02490 0.85 -1.4 536,638 - DZA65_RS02490 0.85 -2.0 536,638 - DZA65_RS02490 0.85 -1.7 536,638 - DZA65_RS02490 0.85 -1.2 536,638 - DZA65_RS02490 0.85 -0.4 536,638 - DZA65_RS02490 0.85 -2.7 536,638 - DZA65_RS02490 0.85 -0.1 536,638 - DZA65_RS02490 0.85 -0.4 536,658 + DZA65_RS02490 0.87 -1.7 536,658 + DZA65_RS02490 0.87 -1.7 536,659 - DZA65_RS02490 0.87 -2.2 536,659 - DZA65_RS02490 0.87 -0.4 536,659 - DZA65_RS02490 0.87 -4.2 536,659 - DZA65_RS02490 0.87 -2.4 536,659 - DZA65_RS02490 0.87 -2.5 536,659 - DZA65_RS02490 0.87 -3.8
Or see this region's nucleotide sequence